IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
493	 27.17	0	458015..458533	-	172	57237508	-	CJE0504	-	hypothetical protein
494	 27.46	0	458523..459050	-	175	57237509	-	CJE0505	-	hypothetical protein
495	 25.94	-1	459047..460006	-	319	57237510	-	CJE0506	-	hypothetical protein
496	 32.10	0	460008..460658	-	216	57237511	-	CJE0507	-	hypothetical protein
497	 32.18	0	460621..461922	-	433	57237512	miaB	CJE0508	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
498	 27.16	0	461919..462161	-	80	57237513	-	CJE0509	-	hypothetical protein
499	 30.49	0	462289..463377	+	362	57237514	nusA	CJE0510	-	transcription elongation factor NusA
500	 30.39	0	463393..464580	-	395	57237515	-	CJE0511	-	transporter, putative
501	 34.10	+1	464655..465701	+	348	57237516	-	CJE0512	-	hypothetical protein
502	 27.85	0	465701..466921	+	406	57237517	-	CJE0513	-	peptidase, putative
503	 29.71	0	466911..468734	+	607	57237518	recG	CJE0514	-	ATP-dependent DNA helicase RecG
504	 30.21	0	468731..469114	-	127	57237519	-	CJE0515	-	hypothetical protein
505	 22.95	-1	469210..469806	+	198	57237520	-	CJE0516	-	putative transcriptional regulator
506	 29.63	0	469822..470523	+	233	57237521	-	CJE0517	-	His/Glu/Gln/Arg/opine ABC transporter permease
507	 32.42	0	470516..471172	+	218	57237522	-	CJE0518	-	His/Glu/Gln/Arg/opine ABC transporter permease
508	 31.84	0	471174..471911	+	245	57237523	-	CJE0519	-	amino acid ABC transporter, ATP-binding protein
509	 36.75	+1	472565..473764	+	399	57237524	tuf	CJE0520	-	elongation factor Tu
510	 23.27	-1	473817..473975	+	52	57237525	rpmG	CJE0521	-	50S ribosomal protein L33
511	 30.56	0	474082..474261	+	59	57237526	secE	CJE0522	-	preprotein translocase subunit SecE
512	 32.96	0	474271..474804	+	177	57237527	nusG	CJE0523	-	transcription antitermination protein NusG
513	 34.98	+1	474830..475255	+	141	57237528	rplK	CJE0524	-	50S ribosomal protein L11
514	 33.62	0	475310..476011	+	233	57237529	rplA	CJE0525	-	50S ribosomal protein L1
515	 32.50	0	476163..476642	+	159	57237530	rplJ	CJE0526	-	50S ribosomal protein L10
516	 38.10	+2	476663..477040	+	125	57237531	rplL	CJE0527	-	50S ribosomal protein L7/L12
517	 33.33	0	477149..481285	+	1378	57237532	rpoB	CJE0528	-	DNA-directed RNA polymerase subunit beta
518	 34.85	+1	481278..485831	+	1517	57237533	rpoC	CJE0529	-	DNA-directed RNA polymerase, beta' subunit
519	 23.23	-1	485862..486623	-	253	57237534	-	CJE0530	-	IclR family transcriptional regulator
520	 13.48	-2	486631..486771	-	46	57237535	-	CJE0531	-	hypothetical protein
521	 31.68	0	486853..487761	+	302	57237536	-	CJE0532	-	dihydrodipicolinate synthase, putative
522	 29.22	0	489202..490488	+	428	57237537	-	CJE0534	-	tartrate transporter, putative
523	 32.57	0	490489..491277	+	262	57237538	-	CJE0535	-	short chain dehydrogenase
524	 32.78	0	491288..492544	+	418	57237539	fucP	CJE0536	-	L-fucose permease
525	 26.72	0	492528..493298	+	256	57237540	-	CJE0537	-	hypothetical protein
526	 30.50	0	493299..493616	+	105	57237541	-	CJE0538	-	hypothetical protein
527	 34.65	+1	493630..495069	+	479	57237542	aldA	CJE0539	-	aldehyde dehydrogenase A
528	 39.79	+2	495397..495783	+	128	57237543	rpsL	CJE0540	-	30S ribosomal protein S12
529	 34.18	+1	495853..496323	+	156	57237544	rpsG	CJE0541	-	30S ribosomal protein S7
530	 37.09	+1	496336..498411	+	691	57237545	fusA	CJE0542	-	elongation factor G
531	 24.85	-1	498700..499902	+	400	57237546	-	CJE0544	-	phage integrase family site specific recombinase
532	 25.15	-1	499899..500069	-	56	57237547	-	CJE0545	-	DNA binding domain-containing protein
533	 25.60	-1	500062..500604	-	180	57237548	-	CJE0546	-	pentapeptide repeat-containing protein
534	 19.79	-2	500614..500805	-	63	57237549	-	CJE0547	-	hypothetical protein
535	 30.42	0	501182..501799	-	205	57237550	-	CJE0548	-	phage anti-repressor protein, putative
536	 24.75	-1	501935..502330	-	131	57237551	-	CJE0549	-	hypothetical protein
537	 29.48	0	502374..503126	-	250	57237552	-	CJE0550	-	site-specific DNA-methyltransferase, putative
538	 24.94	-1	503107..503547	-	146	57237553	-	CJE0551	-	hypothetical protein
539	 22.52	-1	503622..503732	-	36	57237554	-	CJE0552	-	hypothetical protein
540	 24.62	-1	503790..504053	-	87	57237555	-	CJE0553	-	hypothetical protein
541	 27.30	0	504034..504729	-	231	57237556	-	CJE0554	-	hypothetical protein
542	 29.00	0	504729..505466	-	245	57237557	-	CJE0555	-	hypothetical protein
543	 29.47	0	505468..506322	-	284	57237558	-	CJE0556	-	hypothetical protein
544	 23.25	-1	506324..506551	-	75	57237559	-	CJE0557	-	hypothetical protein
545	 22.48	-1	506542..506799	-	85	57237560	-	CJE0558	-	hypothetical protein
546	 22.59	-1	506790..507059	-	89	57237561	-	CJE0559	-	hypothetical protein
547	 30.56	0	507286..507393	-	35	57237562	-	CJE0560	-	hypothetical protein
548	 26.01	-1	507621..507893	-	90	57237563	-	CJE0561	-	hypothetical protein
549	 27.59	0	508148..508843	+	231	57237564	-	CJE0562	-	hypothetical protein
550	 20.70	-2	508862..509233	-	123	57237565	-	CJE0563	-	hypothetical protein
551	 22.47	-1	509223..509756	-	177	57237566	-	CJE0564	-	hypothetical protein
552	 23.42	-1	509753..510418	-	221	57237567	-	CJE0565	-	hypothetical protein
553	 29.66	0	510498..511151	-	217	57237568	-	CJE0566	-	DNA/RNA non-specific endonuclease
554	 22.94	-1	511157..511849	-	230	57237569	-	CJE0567	-	hypothetical protein
555	 22.69	-1	511857..512645	-	262	57237570	-	CJE0568	-	hypothetical protein
556	 25.31	-1	512642..513376	-	244	57237571	-	CJE0569	-	phage repressor protein, putative
557	 28.89	0	513488..513712	+	74	57237572	-	CJE0570	-	hypothetical protein
558	 23.78	-1	513709..514137	+	142	57237573	-	CJE0571	-	hypothetical protein
559	 27.78	0	514134..514511	+	125	57237574	-	CJE0572	-	putative lipoprotein
560	 28.94	0	514508..515509	+	333	57237575	-	CJE0573	-	hypothetical protein
561	 27.78	0	515520..516167	+	215	57237576	-	CJE0574	-	hypothetical protein
562	 26.51	0	516185..516565	+	126	57237577	-	CJE0575	-	hypothetical protein
563	 31.52	0	516565..516951	+	128	57237578	-	CJE0576	-	hypothetical protein
564	 32.17	0	516948..518240	+	430	57237579	-	CJE0577	-	terminase B protein, putative
565	 25.27	-1	518230..518502	+	90	57237580	-	CJE0578	-	hypothetical protein
566	 30.93	0	518483..520021	+	512	57237581	-	CJE0579	-	hypothetical protein
567	 23.04	-1	520014..520217	+	67	57237582	-	CJE0580	-	hypothetical protein
568	 33.02	0	520207..520854	+	215	57237583	-	CJE0581	-	hypothetical protein
569	 29.10	0	520865..521242	+	125	57237584	-	CJE0582	-	hypothetical protein
570	 30.20	0	521507..522718	+	403	57237585	-	CJE0583	-	hypothetical protein
571	 28.58	0	522718..526419	+	1233	57237586	-	CJE0584	-	hypothetical protein
572	 22.81	-1	526698..527543	-	281	57237587	-	CJE0585	-	hypothetical protein
573	 21.74	-2	527553..527759	-	68	57237588	-	CJE0586	-	hypothetical protein
574	 33.53	0	527979..529013	+	344	57237589	-	CJE0587	-	hypothetical protein
575	 29.14	0	529013..529417	+	134	57237590	-	CJE0588	-	hypothetical protein
576	 26.77	0	529395..529592	+	65	57237591	-	CJE0589	-	hypothetical protein
577	 25.50	-1	529595..532237	+	880	57237592	-	CJE0590	-	hypothetical protein
578	 31.34	0	532338..532688	+	116	57237593	-	CJE0591	-	hypothetical protein
579	 24.53	-1	532701..533336	+	211	57237594	-	CJE0592	-	hypothetical protein
580	 30.21	0	533333..533716	+	127	57237595	-	CJE0593	-	hypothetical protein
581	 30.67	0	533709..534083	+	124	57237596	-	CJE0594	-	hypothetical protein
582	 27.87	0	534080..535360	+	426	57237597	-	CJE0595	-	hypothetical protein
583	 18.52	-2	535302..535409	+	35	57238719	-	CJE0596	-	hypothetical protein
584	 28.76	0	535409..535867	+	152	57237598	-	CJE0597	-	hypothetical protein
585	 26.90	0	535929..536348	+	139	57238304	-	CJE0598	-	hypothetical protein
586	 27.78	0	536266..536463	+	65	57238720	-	CJE0599	-	hypothetical protein
587	 31.50	0	536456..536947	+	163	57238303	-	CJE0600	-	hypothetical protein
588	 28.00	0	537061..538671	+	536	57238302	-	CJE0601	-	hypothetical protein
589	 24.67	-1	538788..538937	+	49	57238301	-	CJE0602	-	hypothetical protein
590	 27.07	0	538943..539644	+	233	57238300	-	CJE0603	-	hypothetical protein
591	 29.33	0	539634..540008	+	124	57238299	-	CJE0604	-	hypothetical protein
592	 27.39	0	539981..541258	+	425	57238298	-	CJE0605	-	putative lipoprotein
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.