IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
409	 35.21	+1	376756..376968	+	70	57237425	rpsU	CJE0419	-	30S ribosomal protein S21
410	 35.15	+1	377088..377693	+	201	57237426	-	CJE0420	-	hypothetical protein
411	 31.88	0	377703..378872	+	389	57237427	-	CJE0421	-	glutathionylspermidine synthase family protein
412	 30.24	0	378875..379810	+	311	57237428	-	CJE0422	-	2-hydroxyacid dehydrogenase
413	 29.07	0	379800..380291	+	163	57237429	-	CJE0423	-	nucleotide-binding protein
414	 23.48	-1	380300..380776	+	158	57237430	-	CJE0424	-	putative lipoprotein
415	 25.94	-1	380787..381611	+	274	57237431	-	CJE0425	-	hypothetical protein
416	 25.57	-1	381611..383323	+	570	57237432	-	CJE0426	-	ATPase, AAA family protein
417	 23.04	-1	383288..383860	-	190	57237433	-	CJE0427	-	hypothetical protein
418	 34.45	+1	383860..384753	-	297	57237434	-	CJE0428	-	putative sulfite oxidase subunit YedY
419	 24.09	-1	384809..385609	-	266	57237435	-	CJE0429	-	hypothetical protein
420	 30.36	0	385591..386430	-	279	57237436	pyrF	CJE0430	-	orotidine 5'-phosphate decarboxylase
421	 29.07	0	386427..386825	-	132	57237437	nusB	CJE0431	-	transcription antitermination protein NusB
422	 35.70	+1	386825..387289	-	154	57237438	ribH	CJE0432	-	riboflavin synthase subunit beta
423	 35.05	+1	387286..388101	-	271	57237439	kdsA	CJE0433	-	2-dehydro-3-deoxyphosphooctonate aldolase
424	 31.62	0	388098..389030	-	310	57237440	-	CJE0434	-	integral membrane protein
425	 32.47	0	389132..390514	+	460	57237441	engA	CJE0435	-	GTP-binding protein EngA
426	 25.50	-1	390501..390998	+	165	57237442	aroK	CJE0436	-	shikimate kinase
427	 33.12	0	390995..391954	+	319	57237443	trpS	CJE0437	-	tryptophanyl-tRNA synthetase
428	 33.09	0	391965..393200	+	411	57237444	serS	CJE0438	-	seryl-tRNA synthetase
429	 29.23	0	393210..395672	+	820	57237445	-	CJE0439	-	TPR domain-containing protein
430	 36.01	+1	395703..396338	-	211	57237446	-	CJE0440	-	hypothetical protein
431	 30.56	0	396436..397878	-	480	57237447	pyk	CJE0441	-	pyruvate kinase
432	 31.70	0	397927..399273	-	448	57237448	-	CJE0442	-	malate:quinone oxidoreductase, putative
433	 27.46	0	399391..400020	-	209	57237449	-	CJE0443	-	pantothenate kinase
434	 23.02	-1	400007..400297	-	96	57237450	-	CJE0444	-	tram-like protein
435	 27.93	0	400294..401292	-	332	57237451	-	CJE0445	-	putative lipoprotein
436	 22.63	-1	401289..401867	-	192	57237452	-	CJE0446	-	hypothetical protein
437	 28.77	0	402011..402295	+	94	57237453	gatC	CJE0447	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
438	 27.66	0	402363..402926	+	187	57237454	-	CJE0448	-	cvpA family protein
439	 30.59	0	402928..403401	+	157	57237455	fur	CJE0449	-	ferric uptake regulation protein
440	 31.54	0	403402..404907	+	501	57237456	lysS	CJE0450	-	lysyl-tRNA synthetase
441	 33.17	0	404904..406148	+	414	57237457	glyA	CJE0451	-	serine hydroxymethyltransferase
442	 30.22	0	406145..406690	+	181	57237458	-	CJE0452	-	hypothetical protein
443	 30.23	0	406704..407540	+	278	57237459	-	CJE0453	-	hypothetical protein
444	 29.28	0	407537..408325	+	262	57237460	aroE	CJE0454	-	shikimate 5-dehydrogenase
445	 28.89	0	408400..409299	-	299	57237461	-	CJE0455	-	putative lipoprotein
446	 29.17	0	409389..410204	+	271	57237462	lgt	CJE0456	-	prolipoprotein diacylglyceryl transferase
447	 32.69	0	410273..411055	+	260	57237463	frdC	CJE0457	-	fumarate reductase cytochrome b-556 subunit
448	 37.85	+1	411039..413030	+	663	57237464	frdA	CJE0458	-	fumarate reductase flavoprotein subunit
449	 35.81	+1	413023..413748	+	241	57237465	sdhB	CJE0459	-	fumarate reductase iron-sulfur subunit
450	 24.46	-1	413776..415962	+	728	57237466	-	CJE0460	-	GTP-binding protein
451	 25.79	-1	416072..417781	+	569	57237467	-	CJE0461	-	GTP-binding protein
452	 27.52	0	417781..418485	+	234	57237468	-	CJE0462	-	hypothetical protein
453	 35.12	+1	418621..419349	+	242	57237469	-	CJE0463	-	hypothetical protein
454	 37.17	+1	419351..421072	+	573	57237470	-	CJE0464	-	oxidoreductase, putative
455	 26.13	-1	421045..421155	-	36	57237471	-	CJE0465	-	hypothetical protein
456	 27.73	0	421278..421973	+	231	57237472	-	CJE0466	-	hypothetical protein
457	 35.04	+1	422080..422784	-	234	57237473	-	CJE0467	-	hypothetical protein
458	 28.65	0	422892..423254	+	120	57237474	-	CJE0468	-	HIT family protein
459	 28.80	0	423328..423900	+	190	57237475	-	CJE0469	-	hypothetical protein
460	 25.18	-1	423905..424861	-	318	57237476	-	CJE0470	-	hypothetical protein
461	 27.14	0	424922..425131	-	69	57237477	-	CJE0471	-	hypothetical protein
462	 31.19	0	425298..425717	+	139	57237478	-	CJE0472	-	hypothetical protein
463	 29.50	0	425760..426020	+	86	57237479	-	CJE0473	-	hypothetical protein
464	 29.40	0	426020..426553	+	177	57237480	-	CJE0474	-	putative lipoprotein
465	 34.16	+1	426676..428253	+	525	57237481	-	CJE0475	-	ABC transporter, ATP-binding protein
466	 33.93	0	428246..428578	+	110	57237482	-	CJE0476	-	hypothetical protein
467	 33.33	0	428655..429038	+	127	57237483	-	CJE0477	-	hypothetical protein
468	 27.35	0	429082..429666	-	194	57237484	-	CJE0478	-	hypothetical protein
469	 15.79	-2	429669..429782	+	37	57238718	-	CJE0479	-	hypothetical protein
470	 25.59	-1	429793..431019	+	408	57237485	-	CJE0480	-	hypothetical protein
471	 28.73	0	431012..431749	+	245	57237486	-	CJE0481	-	hypothetical protein
472	 31.51	0	438113..439321	-	402	57237487	murD	CJE0482	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
473	 31.17	0	439321..440382	-	353	57237488	mraY	CJE0483	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
474	 34.01	0	440462..441940	+	492	57237489	pgm	CJE0484	-	phosphoglyceromutase
475	 34.68	+1	442012..442755	+	247	57237490	fabG	CJE0485	-	3-ketoacyl-(acyl-carrier-protein) reductase
476	 28.92	0	442765..443172	+	135	57237491	-	CJE0486	-	hypothetical protein
477	 23.96	-1	443391..443486	+	31	57237492	-	CJE0487	-	hypothetical protein
478	 37.26	+1	443615..445345	+	576	57237493	sdhA	CJE0488	-	succinate dehydrogenase, flavoprotein subunit
479	 35.92	+1	445342..446307	+	321	57237494	sdhB	CJE0489	-	succinate dehydrogenase, iron-sulfur protein subunit
480	 33.57	0	446311..447168	+	285	57237495	sdhC	CJE0490	-	succinate dehydrogenase, C subunit
481	 28.83	0	447192..447857	-	221	57237496	-	CJE0491	-	TenA/Thi-4 family protein
482	 16.24	-2	447835..447951	+	38	57237497	-	CJE0492	-	hypothetical protein
483	 26.50	0	447970..448203	+	77	57237498	acpP	CJE0493	-	acyl carrier protein
484	 36.54	+1	448230..449444	+	404	57237499	fabF	CJE0494	-	3-oxoacyl-(acyl carrier protein) synthase II
485	 35.46	+1	449446..450384	+	312	57237500	accA	CJE0495	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
486	 29.31	0	452673..453269	+	198	57237501	-	CJE0497	-	NUDIX domain-containing protein
487	 30.60	0	453301..454398	-	365	57237502	-	CJE0498	-	methyl-accepting chemotaxis protein
488	 28.70	0	454408..454623	-	71	57237503	-	CJE0499	-	hypothetical protein
489	 35.90	+1	454808..455002	-	64	57237504	rpmB	CJE0500	-	50S ribosomal protein L28
490	 31.48	0	455142..455789	+	215	57237505	rpe	CJE0501	-	ribulose-phosphate 3-epimerase
491	 29.77	0	455855..456556	+	233	57237506	-	CJE0502	-	DNA polymerase III subunit epsilon
492	 35.65	+1	456731..458023	+	430	57237507	thiC	CJE0503	-	thiamine biosynthesis protein ThiC
493	 27.17	0	458015..458533	-	172	57237508	-	CJE0504	-	hypothetical protein
494	 27.46	0	458523..459050	-	175	57237509	-	CJE0505	-	hypothetical protein
495	 25.94	-1	459047..460006	-	319	57237510	-	CJE0506	-	hypothetical protein
496	 32.10	0	460008..460658	-	216	57237511	-	CJE0507	-	hypothetical protein
497	 32.18	0	460621..461922	-	433	57237512	miaB	CJE0508	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
498	 27.16	0	461919..462161	-	80	57237513	-	CJE0509	-	hypothetical protein
499	 30.49	0	462289..463377	+	362	57237514	nusA	CJE0510	-	transcription elongation factor NusA
500	 30.39	0	463393..464580	-	395	57237515	-	CJE0511	-	transporter, putative
501	 34.10	+1	464655..465701	+	348	57237516	-	CJE0512	-	hypothetical protein
502	 27.85	0	465701..466921	+	406	57237517	-	CJE0513	-	peptidase, putative
503	 29.71	0	466911..468734	+	607	57237518	recG	CJE0514	-	ATP-dependent DNA helicase RecG
504	 30.21	0	468731..469114	-	127	57237519	-	CJE0515	-	hypothetical protein
505	 22.95	-1	469210..469806	+	198	57237520	-	CJE0516	-	putative transcriptional regulator
506	 29.63	0	469822..470523	+	233	57237521	-	CJE0517	-	His/Glu/Gln/Arg/opine ABC transporter permease
507	 32.42	0	470516..471172	+	218	57237522	-	CJE0518	-	His/Glu/Gln/Arg/opine ABC transporter permease
508	 31.84	0	471174..471911	+	245	57237523	-	CJE0519	-	amino acid ABC transporter, ATP-binding protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.