IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
337	 30.60	0	311562..311963	-	133	57237353	-	CJE0347	-	TOBE domain-containing protein
338	 31.47	0	311960..312709	-	249	57237354	modA	CJE0348	-	molybdenum ABC transporter, periplasmic molybdenum-binding protein
339	 26.78	0	312763..313449	-	228	57237355	-	CJE0349	-	biotin biosynthesis protein BioC
340	 27.12	0	313446..314057	-	203	57237356	-	CJE0350	-	hypothetical protein
341	 30.27	0	314054..315196	-	380	57237357	bioF	CJE0351	-	8-amino-7-oxononanoate synthase
342	 34.03	+1	315263..316546	+	427	57237358	bioA	CJE0352	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
343	 29.21	0	316533..317138	-	201	57237359	bioD	CJE0353	-	dethiobiotin synthetase
344	 30.79	0	317148..317462	-	104	57237360	-	CJE0354	-	SMR family multidrug efflux pump
345	 30.38	0	317465..317803	-	112	57237361	-	CJE0355	-	SMR family multidrug efflux pump
346	 32.59	0	317935..318471	+	178	57237362	rplY	CJE0356	-	50S ribosomal protein L25/general stress protein Ctc
347	 31.87	0	318468..319013	+	181	57237363	pth	CJE0357	-	peptidyl-tRNA hydrolase
348	 26.91	0	319015..320073	+	352	57237364	-	CJE0358	-	hypothetical protein
349	 32.34	0	320117..321325	+	402	57237365	lysA	CJE0359	-	diaminopimelate decarboxylase
350	 31.25	0	321327..322094	+	255	57237366	-	CJE0360	-	HAD family hydrolase
351	 31.28	0	322082..323155	+	357	57237367	pheA	CJE0361	-	chorismate mutase/prephenate dehydratase
352	 28.86	0	323145..324239	+	364	57237368	hisC	CJE0362	-	histidinol-phosphate aminotransferase
353	 33.33	0	324291..325973	+	560	57237369	fliF	CJE0363	-	flagellar MS-ring protein
354	 35.96	+1	325973..327001	+	342	57237370	fliG	CJE0364	-	flagellar motor switch protein G
355	 30.57	0	327009..327839	+	276	57237371	fliH	CJE0365	-	flagellar assembly protein H
356	 33.55	0	327832..329679	+	615	57237372	dxs	CJE0366	-	1-deoxy-D-xylulose-5-phosphate synthase
357	 28.47	0	329765..330175	+	136	57237373	-	CJE0367	-	FUR family transcriptional regulator
358	 19.30	-2	330221..331417	+	398	57237374	-	CJE0368	-	hypothetical protein
359	 30.51	0	331420..332127	+	235	57237375	ubiE	CJE0369	-	ubiquinone/menaquinone biosynthesis methyltransferase
360	 28.18	0	332124..333287	+	387	57237376	xseA	CJE0370	-	exodeoxyribonuclease VII large subunit
361	 31.29	0	333297..334373	+	358	57237377	serC	CJE0371	-	phosphoserine aminotransferase
362	 33.62	0	334370..334720	+	116	57237378	-	CJE0372	-	endoribonuclease L-PSP family protein
363	 34.15	+1	334717..335691	-	324	57237379	fabH	CJE0373	-	3-oxoacyl-(acyl carrier protein) synthase III
364	 32.22	0	335684..336670	-	328	57237380	plsX	CJE0374	-	putative glycerol-3-phosphate acyltransferase PlsX
365	 40.14	+2	336676..336822	-	48	57237381	rpmF	CJE0375	-	50S ribosomal protein L32
366	 25.42	-1	336846..337199	-	117	57237382	-	CJE0376	-	hypothetical protein
367	 31.16	0	337200..337613	-	137	57237383	ndk	CJE0377	-	nucleoside diphosphate kinase
368	 40.00	+2	337726..338010	-	94	57237384	-	CJE0378	-	ferredoxin, 4Fe-4S
369	 34.67	+1	338216..338812	+	198	57237385	-	CJE0379	-	anti-oxidant AhpCTSA family protein
370	 32.97	0	338931..340019	+	362	57237386	flhB	CJE0380	-	flagellar biosynthesis protein FlhB
371	 34.01	0	340025..340768	-	247	57237387	motB	CJE0381	-	flagellar motor protein MotB
372	 36.04	+1	340771..341547	-	258	57237388	-	CJE0382	-	flagellar motor protein MotA
373	 29.28	0	341564..344203	-	879	57237389	polA	CJE0383	-	DNA polymerase I
374	 35.83	+1	344367..345728	+	453	57237390	-	CJE0384	-	major facilitator family transporter
375	 32.54	0	345725..346732	+	335	57237391	-	CJE0385	-	inosine-uridine preferring nucleoside hydrolase family protein
376	 27.25	0	346688..347131	-	147	57237392	-	CJE0386	-	hypothetical protein
377	 20.10	-2	347131..347727	-	198	57237393	-	CJE0387	-	hypothetical protein
378	 22.95	-1	347708..348391	-	227	57237394	-	CJE0388	-	hypothetical protein
379	 24.28	-1	348435..348986	-	183	57237395	-	CJE0389	-	hypothetical protein
380	 34.40	+1	348988..351810	-	940	57237396	uvrA	CJE0390	-	excinuclease ABC subunit A
381	 31.30	0	351883..352668	-	261	57237397	-	CJE0391	-	hypothetical protein
382	 11.40	-2	352768..352881	+	37	57237398	-	CJE0392	-	hypothetical protein
383	 20.20	-2	352896..352994	-	32	57237399	-	CJE0393	-	hypothetical protein
384	 29.42	0	353084..354334	+	416	57237400	trpE	CJE0394	-	anthranilate synthase component I
385	 30.77	0	354331..355932	+	533	57237401	trpD	CJE0395	-	anthranilate synthase component II
386	 27.33	0	355919..356518	+	199	57237402	trpF	CJE0396	-	N-(5'phosphoribosyl)anthranilate isomerase
387	 35.03	+1	356515..357693	+	392	57237403	trpB	CJE0397	-	tryptophan synthase subunit beta
388	 29.60	0	357686..358435	+	249	57237404	trpA	CJE0398	-	tryptophan synthase subunit alpha
389	 29.31	0	358506..358928	+	140	57237405	-	CJE0399	-	hypothetical protein
390	 31.72	0	358928..359236	+	102	57237406	fliN	CJE0400	-	flagellar motor switch protein
391	 24.69	-1	359237..360034	+	265	57237407	-	CJE0401	-	hypothetical protein
392	 29.23	0	360031..361491	-	486	57237408	-	CJE0402	-	Ppx/GppA family phosphatase
393	 33.33	0	361491..361736	-	81	57237409	-	CJE0403	-	ferredoxin, 4Fe-4S
394	 31.70	0	361849..362520	-	223	57237410	-	CJE0404	-	DNA-binding response regulator
395	 22.96	-1	362599..362916	-	105	57237411	-	CJE0405	-	FolB domain-containing protein
396	 29.56	0	362901..363509	-	202	57237412	-	CJE0406	-	putative glycerol-3-phosphate acyltransferase PlsY
397	 34.31	+1	363710..364735	+	341	57237413	ccpA-2	CJE0407	-	cytochrome c551 peroxidase
398	 27.93	0	364719..364829	-	36	57237414	-	CJE0408	-	hypothetical protein
399	 32.21	0	364829..366166	+	445	57237415	glmM	CJE0409	-	phosphoglucosamine mutase
400	 29.51	0	366159..366629	+	156	57237416	lspA	CJE0410	-	lipoprotein signal peptidase
401	 29.14	0	366613..367065	+	150	57237417	-	CJE0411	-	hypothetical protein
402	 28.52	0	367039..368409	-	456	57237418	-	CJE0412	-	coproporphyrinogen III oxidase
403	 24.60	-1	368537..368788	+	83	57237419	-	CJE0413	-	hypothetical protein
404	 31.71	0	368811..370289	-	492	57237420	cmeC	CJE0414	-	RND efflux system, outer membrane lipoprotein CmeC
405	 34.13	+1	370282..373404	-	1040	57237421	cmeB	CJE0415	-	RND efflux system, inner membrane transporter CmeB
406	 31.52	0	373404..374507	-	367	57237422	cmeA	CJE0416	-	RND efflux system, membrane fusion protein CmeA
407	 26.86	0	374601..375233	-	210	57237423	-	CJE0417	-	TetR family transcriptional regulator
408	 28.32	0	375220..376596	-	458	57237424	-	CJE0418	-	iron-sulfur cluster-binding domain-containing protein
409	 35.21	+1	376756..376968	+	70	57237425	rpsU	CJE0419	-	30S ribosomal protein S21
410	 35.15	+1	377088..377693	+	201	57237426	-	CJE0420	-	hypothetical protein
411	 31.88	0	377703..378872	+	389	57237427	-	CJE0421	-	glutathionylspermidine synthase family protein
412	 30.24	0	378875..379810	+	311	57237428	-	CJE0422	-	2-hydroxyacid dehydrogenase
413	 29.07	0	379800..380291	+	163	57237429	-	CJE0423	-	nucleotide-binding protein
414	 23.48	-1	380300..380776	+	158	57237430	-	CJE0424	-	putative lipoprotein
415	 25.94	-1	380787..381611	+	274	57237431	-	CJE0425	-	hypothetical protein
416	 25.57	-1	381611..383323	+	570	57237432	-	CJE0426	-	ATPase, AAA family protein
417	 23.04	-1	383288..383860	-	190	57237433	-	CJE0427	-	hypothetical protein
418	 34.45	+1	383860..384753	-	297	57237434	-	CJE0428	-	putative sulfite oxidase subunit YedY
419	 24.09	-1	384809..385609	-	266	57237435	-	CJE0429	-	hypothetical protein
420	 30.36	0	385591..386430	-	279	57237436	pyrF	CJE0430	-	orotidine 5'-phosphate decarboxylase
421	 29.07	0	386427..386825	-	132	57237437	nusB	CJE0431	-	transcription antitermination protein NusB
422	 35.70	+1	386825..387289	-	154	57237438	ribH	CJE0432	-	riboflavin synthase subunit beta
423	 35.05	+1	387286..388101	-	271	57237439	kdsA	CJE0433	-	2-dehydro-3-deoxyphosphooctonate aldolase
424	 31.62	0	388098..389030	-	310	57237440	-	CJE0434	-	integral membrane protein
425	 32.47	0	389132..390514	+	460	57237441	engA	CJE0435	-	GTP-binding protein EngA
426	 25.50	-1	390501..390998	+	165	57237442	aroK	CJE0436	-	shikimate kinase
427	 33.12	0	390995..391954	+	319	57237443	trpS	CJE0437	-	tryptophanyl-tRNA synthetase
428	 33.09	0	391965..393200	+	411	57237444	serS	CJE0438	-	seryl-tRNA synthetase
429	 29.23	0	393210..395672	+	820	57237445	-	CJE0439	-	TPR domain-containing protein
430	 36.01	+1	395703..396338	-	211	57237446	-	CJE0440	-	hypothetical protein
431	 30.56	0	396436..397878	-	480	57237447	pyk	CJE0441	-	pyruvate kinase
432	 31.70	0	397927..399273	-	448	57237448	-	CJE0442	-	malate:quinone oxidoreductase, putative
433	 27.46	0	399391..400020	-	209	57237449	-	CJE0443	-	pantothenate kinase
434	 23.02	-1	400007..400297	-	96	57237450	-	CJE0444	-	tram-like protein
435	 27.93	0	400294..401292	-	332	57237451	-	CJE0445	-	putative lipoprotein
436	 22.63	-1	401289..401867	-	192	57237452	-	CJE0446	-	hypothetical protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.