IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
212	 30.77	0	208876..208992	-	38	57237229	-	CJE0218	-	hypothetical protein
213	 29.51	0	209029..209211	+	60	57237230	-	CJE0219	-	hypothetical protein
214	 27.33	0	209239..210054	-	271	57237231	dam	CJE0220	-	DNA adenine methylase
215	 30.06	0	210256..210744	-	162	57237232	-	CJE0221	-	phage virion morphogenesis protein, putative
216	 33.38	0	210748..212964	-	738	57237233	-	CJE0222	-	TP901 family tail tape measure protein
217	 23.24	-1	212985..213311	+	108	57237234	-	CJE0223	-	hypothetical protein
218	 28.28	0	213298..213396	-	32	57237235	-	CJE0224	-	hypothetical protein
219	 32.08	0	213423..213662	-	79	57237236	-	CJE0225	-	hypothetical protein
220	 33.73	0	213815..214324	-	169	57237237	-	CJE0226	-	phage major tail tube protein, putative
221	 34.34	+1	214351..215544	-	397	57237238	-	CJE0227	-	major tail sheath protein
222	 30.28	0	215555..216568	-	337	57237239	-	CJE0228	-	hypothetical protein
223	 32.80	0	216668..217039	-	123	57237240	-	CJE0229	-	hypothetical protein
224	 29.78	0	217036..217542	-	168	57237241	-	CJE0230	-	hypothetical protein
225	 30.00	0	217552..218631	-	359	57237242	-	CJE0231	-	tail fiber protein H, putative
226	 28.50	0	218631..219251	-	206	57237243	-	CJE0232	-	phage tail protein, putative
227	 32.65	0	219248..220414	-	388	57237244	-	CJE0233	-	baseplate assembly protein J, putative
228	 32.62	0	220411..220692	-	93	57237245	-	CJE0234	-	baseplate assembly protein W, putative
229	 23.96	-1	220698..220889	-	63	57237246	-	CJE0235	-	hypothetical protein
230	 33.81	0	220898..221530	-	210	57237247	-	CJE0236	-	baseplate assembly protein V, putative
231	 27.30	0	221530..221844	-	104	57237248	-	CJE0237	-	hypothetical protein
232	 22.76	-1	221847..221969	-	40	57237249	-	CJE0238	-	hypothetical protein
233	 27.43	0	221956..222192	-	78	57237250	-	CJE0239	-	putative lipoprotein
234	 23.68	-1	222201..222542	-	113	57237251	-	CJE0240	-	hypothetical protein
235	 35.90	+1	222553..222942	-	129	57237252	-	CJE0241	-	hypothetical protein
236	 24.71	-1	223009..223182	-	57	57238717	-	CJE0242	-	hypothetical protein
237	 28.97	0	223091..223525	+	144	57237253	-	CJE0243	-	hypothetical protein
238	 31.37	0	223527..224342	+	271	57237254	-	CJE0244	-	Mu-like prophage I protein, putative
239	 30.87	0	224507..224872	+	121	57237255	-	CJE0245	-	hypothetical protein
240	 34.15	+1	224875..225852	+	325	57237256	-	CJE0246	-	hypothetical protein
241	 29.82	0	226028..226426	+	132	57237257	-	CJE0247	-	hypothetical protein
242	 31.83	0	226419..227018	+	199	57237258	-	CJE0248	-	hypothetical protein
243	 32.77	0	227105..228688	+	527	57237259	-	CJE0249	-	phage uncharacterized protein
244	 29.76	0	228698..230068	+	456	57237260	-	CJE0250	-	hypothetical protein
245	 30.02	0	230070..231308	+	412	57237261	-	CJE0251	-	prophage MuSo1, F protein, putative
246	 28.53	0	231434..231808	+	124	57237262	-	CJE0252	-	phage tail protein, putative
247	 30.73	0	231801..231992	+	63	57237263	-	CJE0253	-	tail protein X, putative
248	 29.65	0	231986..232963	+	325	57237264	-	CJE0254	-	tail protein D, putative
249	 28.07	0	232960..233244	-	94	57237265	-	CJE0255	-	DNA-binding protein, putative
250	 30.65	0	233338..234009	+	223	57237266	dns	CJE0256	-	extracellular deoxyribonuclease
251	 30.43	0	234001..234276	-	91	57237267	-	CJE0257	-	hypothetical protein
252	 29.56	0	234323..234772	-	149	57237268	-	CJE0258	-	hypothetical protein
253	 26.55	0	234769..235461	-	230	57237269	-	CJE0259	-	hypothetical protein
254	 32.59	0	235461..235730	-	89	57237270	-	CJE0260	-	hypothetical protein
255	 30.63	0	235727..236689	-	320	57237271	-	CJE0261	-	hypothetical protein
256	 30.75	0	236798..237184	-	128	57237272	-	CJE0262	-	hypothetical protein
257	 30.04	0	237181..237453	-	90	57237273	-	CJE0263	-	hypothetical protein
258	 24.44	-1	237517..237696	-	59	57237274	-	CJE0264	-	hypothetical protein
259	 31.07	0	237693..238178	-	161	57237275	-	CJE0265	-	host-nuclease inhibitor protein Gam, putative
260	 35.67	+1	238285..238626	-	113	57237276	-	CJE0266	-	hypothetical protein
261	 29.03	0	238722..238907	-	61	57237277	-	CJE0267	-	hypothetical protein
262	 28.92	0	238891..239094	-	67	57237278	-	CJE0268	-	hypothetical protein
263	 34.31	+1	239097..240020	-	307	57237279	-	CJE0269	-	bacteriophage DNA transposition protein B, putative
264	 32.37	0	240090..242162	-	690	57237280	-	CJE0270	-	bacteriophage DNA transposition protein A, putative
265	 32.34	0	242162..242362	-	66	57237281	-	CJE0271	-	hypothetical protein
266	 27.33	0	242507..243139	+	210	57237282	-	CJE0272	-	transcriptional regulator, putative
267	 26.79	0	243155..244132	+	325	57237283	-	CJE0273	-	hypothetical protein
268	 32.85	0	244537..245565	+	342	57237284	argC	CJE0275	-	N-acetyl-gamma-glutamyl-phosphate reductase
269	 32.89	0	245575..246021	+	148	57237285	-	CJE0276	-	acetyltransferase
270	 33.69	0	246031..246870	+	279	57237286	argB	CJE0277	-	acetylglutamate kinase
271	 32.91	0	246880..248061	+	393	57237287	argD	CJE0278	-	acetylornithine aminotransferase
272	 32.06	0	248081..248710	-	209	57237288	pcm	CJE0279	-	protein-L-isoaspartate O-methyltransferase
273	 32.97	0	248799..249347	+	182	57237289	-	CJE0280	-	hexapaptide repeat-containing transferase
274	 30.27	0	249316..250686	-	456	57237290	-	CJE0281	-	nicotinate phosphoribosyltransferase
275	 31.87	0	250676..251698	-	340	57237291	nrdF	CJE0282	-	ribonucleotide-diphosphate reductase subunit beta
276	 25.06	-1	251701..252123	-	140	57237292	-	CJE0283	-	hypothetical protein
277	 31.53	0	252124..252732	-	202	57237293	pyrE	CJE0284	-	orotate phosphoribosyltransferase
278	 32.44	0	252735..253292	-	185	57237294	frr	CJE0285	-	ribosome recycling factor
279	 33.87	0	253308..253679	-	123	57237295	secG	CJE0286	-	preprotein translocase subunit SecG
280	 31.61	0	253783..254478	-	231	57237296	-	CJE0287	-	hypothetical protein
281	 31.45	0	254639..255274	+	211	57237297	cynT	CJE0288	-	carbonic anhydrase
282	 27.76	0	255271..257154	+	627	57237298	-	CJE0289	-	mechanosensitive ion channel family protein
283	 35.19	+1	257177..258148	-	323	57237299	-	CJE0290	-	NifU family protein
284	 36.89	+1	258158..259339	-	393	57237300	-	CJE0291	-	cysteine desulfurase
285	 25.45	-1	260051..261217	-	388	57237301	-	CJE0293	-	hypothetical protein
286	 33.33	0	261376..261567	+	63	57237302	rpmI	CJE0294	-	50S ribosomal protein L35
287	 37.01	+1	261661..262014	+	117	57237303	rplT	CJE0295	-	50S ribosomal protein L20
288	 23.60	-1	262073..262555	-	160	57237304	-	CJE0296	-	hypothetical protein
289	 30.89	0	263633..264490	+	285	57237305	-	CJE0298	-	hypothetical protein
290	 27.88	0	264521..264997	+	158	57237306	-	CJE0299	-	hypothetical protein
291	 29.60	0	264966..266276	-	436	57237307	-	CJE0300	-	major facilitator superfamily protein
292	 25.42	-1	266260..266436	-	58	57237308	-	CJE0301	-	hypothetical protein
293	 31.43	0	266529..267002	+	157	57237309	moaC	CJE0302	-	molybdenum cofactor biosynthesis protein C
294	 26.89	0	266980..267243	+	87	57237310	-	CJE0303	-	hypothetical protein
295	 26.03	-1	267257..268393	+	378	57237311	-	CJE0304	-	hypothetical protein
296	 30.13	0	268412..269191	-	259	57237312	xth	CJE0305	-	exodeoxyribonuclease III
297	 27.03	0	269288..270826	+	512	57237313	-	CJE0306	-	sulfatase, putative
298	 28.85	0	270823..271179	+	118	57237314	dgkA	CJE0307	-	diacylglycerol kinase
299	 25.44	-1	271176..271403	+	75	57237315	-	CJE0308	-	hypothetical protein
300	 32.43	0	271412..272407	+	331	57237316	pyrC	CJE0309	-	dihydroorotase
301	 26.47	0	272329..275679	+	1116	57237317	-	CJE0310	-	D12 class N6 adenine-specific DNA methyltransferase, putative
302	 28.71	0	275685..276398	-	237	57237318	-	CJE0311	-	hypothetical protein
303	 30.52	0	276479..278467	-	662	57237319	-	CJE0312	-	methyl-accepting chemotaxis protein
304	 33.79	0	278663..279538	+	291	57237320	-	CJE0313	-	zinc transporter ZupT
305	 31.16	0	279637..281616	-	659	57237321	-	CJE0314	-	methyl-accepting chemotaxis protein
306	 28.24	0	281817..282326	-	169	57237322	-	CJE0315	-	hypothetical protein
307	 23.92	-1	282326..282835	-	169	57237323	-	CJE0316	-	hypothetical protein
308	 33.33	0	282869..283957	-	362	57237324	-	CJE0317	-	SPFH domain-containing protein
309	 33.77	0	283970..284884	-	304	57237325	ilvE	CJE0318	-	branched-chain amino acid aminotransferase
310	 34.30	+1	285060..285266	+	68	57237326	-	CJE0319	-	4-oxalocrotonate tautomerase family protein
311	 31.36	0	285263..285718	+	151	57237327	-	CJE0320	-	anti-oxidant AhpCTSA family protein
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.