IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.93	0	1..1323	+	440	57236915	dnaA	CJE0001	-	chromosomal replication initiation protein
2	 26.22	0	1483..2550	+	355	57236916	dnaN	CJE0002	-	DNA polymerase III subunit beta
3	 33.03	0	2579..4888	+	769	57236917	gyrB	CJE0003	-	DNA gyrase subunit B
4	 31.58	0	4914..5255	-	113	57236918	-	CJE0004	-	hypothetical protein
5	 32.85	0	5258..6496	-	412	57236919	-	CJE0005	-	molybdopterin oxidoreductase family protein
6	 31.72	0	6707..8008	+	433	57236920	-	CJE0006	-	Na+/H+ antiporter family protein
7	 35.00	+1	8142..12632	+	1496	57236921	gltB	CJE0007	-	glutamate synthase, large subunit
8	 34.79	+1	12642..14087	+	481	57236922	gltD	CJE0008	-	glutamate synthase subunit beta
9	 32.29	0	14088..14663	-	191	57236923	rnhB	CJE0009	-	ribonuclease HII
10	 27.50	0	14696..14935	-	79	57236924	comEA	CJE0010	-	competence protein ComEA
11	 35.51	+1	15000..15551	-	183	57236925	rbr	CJE0011	-	rubrerythrin
12	 37.21	+1	15807..17483	+	558	57236926	ilvD	CJE0012	-	dihydroxy-acid dehydratase
13	 32.27	0	17983..19209	-	408	57236927	-	CJE0015	-	hypothetical protein
14	 34.07	+1	19287..19961	+	224	57236928	-	CJE0016	-	ExsB
15	 33.20	0	19982..21508	-	508	57236929	-	CJE0017	-	DsbB family disulfide bond formation protein
16	 31.55	0	21520..21687	-	55	57236930	-	CJE0018	-	hypothetical protein
17	 27.83	0	21793..23574	-	593	57236931	-	CJE0019	-	methyl-accepting chemotaxis protein
18	 32.24	0	23564..24478	-	304	57236932	ccpA-1	CJE0020	-	cytochrome c551 peroxidase
19	 31.63	0	24542..25420	-	292	57236933	-	CJE0021	-	fumarylacetoacetate hydrolase family protein
20	 30.01	0	25533..26435	-	300	57236934	-	CJE0022	-	RNA pseudouridylate synthase family protein
21	 33.63	0	26513..27841	+	442	57236935	purB-1	CJE0023	-	adenylosuccinate lyase
22	 33.59	0	27857..30226	+	789	57236936	nrdA	CJE0024	-	ribonucleotide-diphosphate reductase subunit alpha
23	 31.17	0	30265..31650	-	461	57236937	-	CJE0025	-	sodium/dicarboxylate symporter
24	 34.29	+1	31770..32393	-	207	57236938	thyX	CJE0026	-	FAD-dependent thymidylate synthase
25	 34.56	+1	32513..34144	+	543	57236939	pyrG	CJE0027	-	CTP synthetase
26	 29.71	0	34131..35702	+	523	57236940	recJ	CJE0028	-	single-stranded-DNA-specific exonuclease RecJ
27	 34.24	+1	35798..36793	+	331	57236941	ansA	CJE0029	-	L-asparaginase
28	 20.67	-2	43241..44638	+	465	57237045	-	CJE0030	-	hypothetical protein
29	 30.42	0	44699..48472	+	1257	57237046	-	CJE0031	-	type II restriction-modification enzyme
30	 23.08	-1	48472..50928	+	818	57237047	-	CJE0032	-	hypothetical protein
31	 32.34	0	50958..51659	-	233	57237048	-	CJE0033	-	hypothetical protein
32	 35.74	+1	51656..52858	-	400	57237049	-	CJE0034	-	Bcr/CflA subfamily drug resistance transporter
33	 31.19	0	52961..54310	+	449	57237050	-	CJE0035	-	hypothetical protein
34	 36.59	+1	54334..55377	-	347	57237051	-	CJE0036	-	cytochrome c family protein
35	 24.54	-1	55555..56202	-	215	57237052	-	CJE0037	-	hypothetical protein
36	 37.42	+1	56202..58010	-	602	57237053	typA	CJE0038	-	GTP-binding protein TypA
37	 23.15	-1	58145..58468	+	107	57237054	-	CJE0039	-	hypothetical protein
38	 26.52	0	58487..60277	+	596	57237055	-	CJE0040	-	hypothetical protein
39	 36.84	+1	60330..61214	+	294	57237056	flgD	CJE0041	-	flagellar basal body rod modification protein
40	 33.88	0	61218..62855	+	545	57237057	flgE-1	CJE0042	-	flagellar hook protein
41	 25.32	-1	62859..64730	-	623	57237058	-	CJE0043	-	hypothetical protein
42	 27.58	0	64687..65451	-	254	57237059	-	CJE0044	-	hypothetical protein
43	 31.18	0	65697..65789	+	30	57237060	-	CJE0045	-	hypothetical protein
44	 32.74	0	67407..68423	-	338	57237061	trmU	CJE0048	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
45	 31.19	0	68423..69028	-	201	57237062	-	CJE0049	-	lysine decarboxylase family protein
46	 27.67	0	69149..69307	-	52	57237063	-	CJE0050	-	hypothetical protein
47	 23.87	-1	69304..70296	-	330	57237064	-	CJE0051	-	hypothetical protein
48	 31.87	0	70366..70638	-	90	57237065	-	CJE0052	-	hypothetical protein
49	 29.90	0	70677..70880	-	67	57237066	-	CJE0053	-	hypothetical protein
50	 31.58	0	71013..71867	+	284	57237067	-	CJE0054	-	HmcD domain-containing protein
51	 29.48	0	71852..72448	+	198	57237068	-	CJE0055	-	peptidase family protein
52	 33.82	0	72497..73318	-	273	57237069	fliY	CJE0056	-	flagellar motor switch protein FliY
53	 33.98	0	73336..74415	-	359	57237070	fliM	CJE0057	-	flagellar motor switch protein FliM
54	 32.61	0	74415..75107	-	230	57237071	fliA	CJE0058	-	flagellar biosynthesis sigma factor
55	 26.89	0	75088..75444	-	118	57237072	-	CJE0059	-	hypothetical protein
56	 31.26	0	75463..76329	-	288	57237073	-	CJE0060	-	ParaA family ATPase
57	 30.52	0	76322..77776	-	484	57237074	flhF	CJE0061	-	flagellar biosynthesis regulator FlhF
58	 30.59	0	77786..78259	-	157	57237075	folK	CJE0062	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
59	 35.21	+1	78262..78741	-	159	57237076	aroQ	CJE0063	-	3-dehydroquinate dehydratase
60	 28.94	0	78832..80061	+	409	57237077	-	CJE0064	-	chlorohydrolase
61	 32.78	0	80049..80945	+	298	57237078	sppA	CJE0065	-	signal peptide peptidase SppA, 36K type
62	 34.80	+1	81097..82053	+	318	57237079	-	CJE0066	-	hypothetical protein
63	 26.42	0	82050..82208	-	52	57237080	-	CJE0067	-	hypothetical protein
64	 31.05	0	83090..83746	-	218	57237081	-	CJE0069	-	hypothetical protein
65	 35.21	+1	83739..85178	-	479	57237082	-	CJE0070	-	iron-sulfur cluster binding protein
66	 33.33	0	85175..85915	-	246	57237083	-	CJE0071	-	hypothetical protein
67	 34.92	+1	86025..87722	-	565	57237084	lctP	CJE0072	-	L-lactate permease
68	 31.05	0	87894..88463	-	189	57237085	cdtC	CJE0073	-	cytolethal distending toxin, subunit C
69	 36.47	+1	88474..89271	-	265	57237086	cdtB	CJE0074	-	cytolethal distending toxin, subunit B
70	 34.20	+1	89268..90074	-	268	57237087	cdtA	CJE0075	-	cytolethal distending toxin, subunit A
71	 21.85	-2	90151..90420	+	89	57237088	-	CJE0076	-	hypothetical protein
72	 34.87	+1	90421..91983	+	520	57237089	cydA	CJE0077	-	cytochrome d ubiquinol oxidase, subunit I
73	 32.71	0	91983..93107	+	374	57237090	cydB	CJE0078	-	cytochrome d ubiquinol oxidase, subunit II
74	 24.76	-1	93117..93221	+	34	57237091	-	CJE0079	-	hypothetical protein
75	 26.01	-1	93301..93996	-	231	57237092	-	CJE0080	-	aspartate racemase, putative
76	 29.02	0	94116..94811	-	231	57237093	ung	CJE0081	-	uracil-DNA glycosylase
77	 33.40	0	95082..96488	+	468	57237094	aspA	CJE0082	-	aspartate ammonia-lyase
78	 37.40	+1	96514..97842	+	442	57237095	dcuA	CJE0083	-	anaerobic C4-dicarboxylate transporter
79	 27.39	0	97948..99309	+	453	57237096	-	CJE0084	-	putative lipoprotein
80	 27.37	0	99319..99687	+	122	57237097	-	CJE0085	-	putative lipoprotein
81	 34.78	+1	99711..100334	+	207	57237098	-	CJE0086	-	putative lipoprotein
82	 31.02	0	100417..101754	+	445	57237099	-	CJE0087	-	hypothetical protein
83	 32.75	0	101764..102966	+	400	57237100	-	CJE0088	-	hypothetical protein
84	 34.95	+1	103125..103433	+	102	57237101	rplU	CJE0089	-	50S ribosomal protein L21
85	 37.25	+1	103444..103698	+	84	57237102	rpmA	CJE0090	-	50S ribosomal protein L27
86	 35.99	+1	103805..104857	+	350	57237103	obgE	CJE0091	-	GTPase ObgE
87	 32.01	0	104962..105717	+	251	57237104	proB	CJE0092	-	gamma-glutamyl kinase
88	 32.57	0	105791..106708	+	305	57237105	fmt	CJE0093	-	methionyl-tRNA formyltransferase
89	 28.44	0	106671..107324	+	217	57237106	-	CJE0094	-	biotin--protein ligase
90	 31.04	0	107321..108106	+	261	57237107	-	CJE0095	-	ParA family chromosome partitioning ATPase
91	 25.93	-1	108112..108948	+	278	57237108	-	CJE0096	-	ParB family chromosome partitioning protein
92	 28.17	0	109009..109434	+	141	57237109	-	CJE0097	-	F0F1 ATP synthase subunit B'
93	 25.54	-1	109445..109957	+	170	57237110	-	CJE0098	-	F0F1 ATP synthase subunit B
94	 21.84	-2	109960..110481	+	173	57237111	atpH	CJE0099	-	F0F1 ATP synthase subunit delta
95	 35.33	+1	110495..112000	+	501	57237112	atpA	CJE0100	-	F0F1 ATP synthase subunit alpha
96	 28.93	0	112009..112893	+	294	57237113	atpG	CJE0101	-	F0F1 ATP synthase subunit gamma
97	 35.12	+1	112919..114316	+	465	57237114	atpD	CJE0102	-	F0F1 ATP synthase subunit beta
98	 35.13	+1	114320..114709	+	129	57237115	atpC	CJE0103	-	F0F1 ATP synthase subunit epsilon
99	 29.91	0	114709..115263	+	184	57237116	-	CJE0104	-	MotA/TolQ/ExbB proton channel family protein
100	 28.21	0	115272..115661	+	129	57237117	-	CJE0105	-	TonB system transport protein ExbD, putative
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.