IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
173	 30.95	0	179894..180103	-	69	57237190	-	CJE0178	-	PhnA domain-containing protein
174	 31.94	0	180096..180815	-	239	57237191	-	CJE0179	-	TerC family integral membrane protein
175	 29.28	0	180887..181453	-	188	57237192	purN	CJE0180	-	phosphoribosylglycinamide formyltransferase
176	 28.45	0	181444..182814	-	456	57237193	-	CJE0181	-	hypothetical protein
177	 28.04	0	182798..183496	-	232	57237194	-	CJE0182	-	hypothetical protein
178	 30.35	0	183498..185003	-	501	57237195	-	CJE0183	-	Mg chelatase-related protein
179	 29.55	0	185000..185527	-	175	57237196	def	CJE0184	-	peptide deformylase
180	 32.48	0	185563..186147	-	194	57237197	clpP	CJE0185	-	ATP-dependent Clp protease proteolytic subunit
181	 30.11	0	186147..187481	-	444	57237198	tig	CJE0186	-	trigger factor
182	 32.46	0	187625..188197	+	190	57237199	folE	CJE0187	-	GTP cyclohydrolase I
183	 36.51	+1	188197..189582	+	461	57237200	fliI	CJE0188	-	flagellum-specific ATP synthase
184	 34.45	+1	189585..190922	-	445	57237201	purF	CJE0189	-	amidophosphoribosyltransferase
185	 35.12	+1	190924..191652	-	242	57237202	dapB	CJE0190	-	dihydrodipicolinate reductase
186	 30.88	0	191715..192896	-	393	57237203	-	CJE0191	-	recombination factor protein RarA
187	 20.92	-2	192896..194023	-	375	57237204	-	CJE0192	-	hypothetical protein
188	 29.60	0	194157..194504	-	115	57237205	-	CJE0193	-	hypothetical protein
189	 26.40	0	194603..195208	-	201	57237206	-	CJE0194	-	hypothetical protein
190	 29.32	0	195177..195500	-	107	57237207	-	CJE0195	-	hypothetical protein
191	 33.18	0	197273..199267	+	664	57237208	-	CJE0197	-	OPT family oligopeptide transporter
192	 30.97	0	199341..200144	+	267	57237209	-	CJE0198	-	undecaprenol kinase, putative
193	 33.94	0	200275..202083	+	602	57237210	thrS	CJE0199	-	threonyl-tRNA synthetase
194	 32.95	0	202080..202598	+	172	57237211	infC	CJE0200	-	translation initiation factor IF-3
195	 27.01	0	202637..203728	+	363	57237212	-	CJE0201	-	D12 class N6 adenine-specific DNA methyltransferase
196	 25.49	-1	203768..203869	+	33	57237213	-	CJE0202	-	hypothetical protein
197	 28.95	0	203805..203918	+	37	57237214	-	CJE0203	-	hypothetical protein
198	 34.13	+1	203958..204083	+	41	57237215	-	CJE0204	-	hypothetical protein
199	 29.75	0	204203..204649	+	148	57237216	-	CJE0205	-	hypothetical protein
200	 25.11	-1	204813..205043	+	76	57237217	-	CJE0206	-	hypothetical protein
201	 32.08	0	205106..205345	+	79	57237218	-	CJE0207	-	hypothetical protein
202	 31.69	0	205424..205606	+	60	57237219	-	CJE0208	-	hypothetical protein
203	 29.51	0	205700..205882	-	60	57237220	-	CJE0209	-	hypothetical protein
204	 29.06	0	205926..206042	+	38	57237221	-	CJE0210	-	hypothetical protein
205	 24.51	-1	206043..206246	+	67	57237222	-	CJE0211	-	pathogenicity domain-containing protein
206	 34.43	+1	206505..206687	+	60	57237223	-	CJE0212	-	pathogenicity protein,-like protein
207	 28.86	0	207115..207315	-	66	57237224	-	CJE0213	-	hypothetical protein
208	 20.83	-2	207469..207564	+	31	57237225	-	CJE0214	-	hypothetical protein
209	 27.94	0	207610..208239	+	209	57237226	-	CJE0215	-	phage repressor protein, putative
210	 23.99	-1	208320..208640	+	106	57237227	-	CJE0216	-	hypothetical protein
211	 30.26	0	208650..208844	+	64	57237228	-	CJE0217	-	hypothetical protein
212	 30.77	0	208876..208992	-	38	57237229	-	CJE0218	-	hypothetical protein
213	 29.51	0	209029..209211	+	60	57237230	-	CJE0219	-	hypothetical protein
214	 27.33	0	209239..210054	-	271	57237231	dam	CJE0220	-	DNA adenine methylase
215	 30.06	0	210256..210744	-	162	57237232	-	CJE0221	-	phage virion morphogenesis protein, putative
216	 33.38	0	210748..212964	-	738	57237233	-	CJE0222	-	TP901 family tail tape measure protein
217	 23.24	-1	212985..213311	+	108	57237234	-	CJE0223	-	hypothetical protein
218	 28.28	0	213298..213396	-	32	57237235	-	CJE0224	-	hypothetical protein
219	 32.08	0	213423..213662	-	79	57237236	-	CJE0225	-	hypothetical protein
220	 33.73	0	213815..214324	-	169	57237237	-	CJE0226	-	phage major tail tube protein, putative
221	 34.34	+1	214351..215544	-	397	57237238	-	CJE0227	-	major tail sheath protein
222	 30.28	0	215555..216568	-	337	57237239	-	CJE0228	-	hypothetical protein
223	 32.80	0	216668..217039	-	123	57237240	-	CJE0229	-	hypothetical protein
224	 29.78	0	217036..217542	-	168	57237241	-	CJE0230	-	hypothetical protein
225	 30.00	0	217552..218631	-	359	57237242	-	CJE0231	-	tail fiber protein H, putative
226	 28.50	0	218631..219251	-	206	57237243	-	CJE0232	-	phage tail protein, putative
227	 32.65	0	219248..220414	-	388	57237244	-	CJE0233	-	baseplate assembly protein J, putative
228	 32.62	0	220411..220692	-	93	57237245	-	CJE0234	-	baseplate assembly protein W, putative
229	 23.96	-1	220698..220889	-	63	57237246	-	CJE0235	-	hypothetical protein
230	 33.81	0	220898..221530	-	210	57237247	-	CJE0236	-	baseplate assembly protein V, putative
231	 27.30	0	221530..221844	-	104	57237248	-	CJE0237	-	hypothetical protein
232	 22.76	-1	221847..221969	-	40	57237249	-	CJE0238	-	hypothetical protein
233	 27.43	0	221956..222192	-	78	57237250	-	CJE0239	-	putative lipoprotein
234	 23.68	-1	222201..222542	-	113	57237251	-	CJE0240	-	hypothetical protein
235	 35.90	+1	222553..222942	-	129	57237252	-	CJE0241	-	hypothetical protein
236	 24.71	-1	223009..223182	-	57	57238717	-	CJE0242	-	hypothetical protein
237	 28.97	0	223091..223525	+	144	57237253	-	CJE0243	-	hypothetical protein
238	 31.37	0	223527..224342	+	271	57237254	-	CJE0244	-	Mu-like prophage I protein, putative
239	 30.87	0	224507..224872	+	121	57237255	-	CJE0245	-	hypothetical protein
240	 34.15	+1	224875..225852	+	325	57237256	-	CJE0246	-	hypothetical protein
241	 29.82	0	226028..226426	+	132	57237257	-	CJE0247	-	hypothetical protein
242	 31.83	0	226419..227018	+	199	57237258	-	CJE0248	-	hypothetical protein
243	 32.77	0	227105..228688	+	527	57237259	-	CJE0249	-	phage uncharacterized protein
244	 29.76	0	228698..230068	+	456	57237260	-	CJE0250	-	hypothetical protein
245	 30.02	0	230070..231308	+	412	57237261	-	CJE0251	-	prophage MuSo1, F protein, putative
246	 28.53	0	231434..231808	+	124	57237262	-	CJE0252	-	phage tail protein, putative
247	 30.73	0	231801..231992	+	63	57237263	-	CJE0253	-	tail protein X, putative
248	 29.65	0	231986..232963	+	325	57237264	-	CJE0254	-	tail protein D, putative
249	 28.07	0	232960..233244	-	94	57237265	-	CJE0255	-	DNA-binding protein, putative
250	 30.65	0	233338..234009	+	223	57237266	dns	CJE0256	-	extracellular deoxyribonuclease
251	 30.43	0	234001..234276	-	91	57237267	-	CJE0257	-	hypothetical protein
252	 29.56	0	234323..234772	-	149	57237268	-	CJE0258	-	hypothetical protein
253	 26.55	0	234769..235461	-	230	57237269	-	CJE0259	-	hypothetical protein
254	 32.59	0	235461..235730	-	89	57237270	-	CJE0260	-	hypothetical protein
255	 30.63	0	235727..236689	-	320	57237271	-	CJE0261	-	hypothetical protein
256	 30.75	0	236798..237184	-	128	57237272	-	CJE0262	-	hypothetical protein
257	 30.04	0	237181..237453	-	90	57237273	-	CJE0263	-	hypothetical protein
258	 24.44	-1	237517..237696	-	59	57237274	-	CJE0264	-	hypothetical protein
259	 31.07	0	237693..238178	-	161	57237275	-	CJE0265	-	host-nuclease inhibitor protein Gam, putative
260	 35.67	+1	238285..238626	-	113	57237276	-	CJE0266	-	hypothetical protein
261	 29.03	0	238722..238907	-	61	57237277	-	CJE0267	-	hypothetical protein
262	 28.92	0	238891..239094	-	67	57237278	-	CJE0268	-	hypothetical protein
263	 34.31	+1	239097..240020	-	307	57237279	-	CJE0269	-	bacteriophage DNA transposition protein B, putative
264	 32.37	0	240090..242162	-	690	57237280	-	CJE0270	-	bacteriophage DNA transposition protein A, putative
265	 32.34	0	242162..242362	-	66	57237281	-	CJE0271	-	hypothetical protein
266	 27.33	0	242507..243139	+	210	57237282	-	CJE0272	-	transcriptional regulator, putative
267	 26.79	0	243155..244132	+	325	57237283	-	CJE0273	-	hypothetical protein
268	 32.85	0	244537..245565	+	342	57237284	argC	CJE0275	-	N-acetyl-gamma-glutamyl-phosphate reductase
269	 32.89	0	245575..246021	+	148	57237285	-	CJE0276	-	acetyltransferase
270	 33.69	0	246031..246870	+	279	57237286	argB	CJE0277	-	acetylglutamate kinase
271	 32.91	0	246880..248061	+	393	57237287	argD	CJE0278	-	acetylornithine aminotransferase
272	 32.06	0	248081..248710	-	209	57237288	pcm	CJE0279	-	protein-L-isoaspartate O-methyltransferase
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.