IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1719	 32.85	0	1672859..1673482	+	207	57238617	hisI	CJE1776	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1720	 32.99	0	1673507..1674667	-	386	57238618	-	CJE1777	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative
1721	 34.60	+1	1674693..1675799	-	368	57238619	mrp	CJE1778	-	ATP/GTP-binding protein
1722	 33.42	0	1675922..1677037	+	371	57238620	ispDF	CJE1779	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1723	 24.77	-1	1677034..1677921	+	295	57238621	-	CJE1780	-	DNA-binding response regulator, putative
1724	 29.46	0	1677899..1679059	+	386	57238622	-	CJE1781	-	ATP-sulfurylase family protein
1725	 29.34	0	1679064..1679564	+	166	57238623	pgpA	CJE1782	-	phosphatidylglycerophosphatase A
1726	 33.33	0	1679643..1679906	+	87	57238624	rpsT	CJE1783	-	30S ribosomal protein S20
1727	 35.21	+1	1679925..1680992	+	355	57238625	prfA	CJE1784	-	peptide chain release factor 1
1728	 31.22	0	1681006..1681761	-	251	57238626	-	CJE1785	-	hypothetical protein
1729	 31.15	0	1681954..1684110	+	718	57238627	chuA	CJE1786	-	TonB-dependent heme receptor
1730	 32.52	0	1684085..1685071	+	328	57238628	-	CJE1787	-	hemin ABC transporter, permease protein, putative
1731	 27.80	0	1685071..1685847	+	258	57238629	-	CJE1788	-	hemin ABC transporter, ATP-binding protein, putative
1732	 28.50	0	1685844..1686650	+	268	57238630	-	CJE1789	-	hemin ABC transporter, periplasmic hemin-binding protein, putative
1733	 33.17	0	1687671..1688930	+	419	57238631	kgtP	CJE1791	-	alpha-ketoglutarate permease
1734	 30.88	0	1688916..1689935	-	339	57238632	mutY	CJE1792	-	A/G-specific adenine glycosylase
1735	 26.43	0	1690008..1690760	+	250	57238633	-	CJE1793	-	hypothetical protein
1736	 32.11	0	1691440..1692420	+	326	57238634	-	CJE1794	-	riboflavin biosynthesis protein RibD, putative
1737	 24.33	-1	1692401..1692922	+	173	57238635	-	CJE1795	-	hypothetical protein
1738	 34.65	+1	1692930..1694294	-	454	57238636	sdaA	CJE1796	-	L-serine ammonia-lyase
1739	 31.41	0	1694309..1695559	-	416	57238637	sdaC	CJE1797	-	serine transporter
1740	 29.98	0	1695818..1696234	-	138	57238638	-	CJE1798	-	hypothetical protein
1741	 25.54	-1	1696300..1697043	-	247	57238639	-	CJE1799	-	hypothetical protein
1742	 31.46	0	1697202..1697627	+	141	57238640	exbB-2	CJE1800	-	TonB system transport protein ExbB
1743	 25.06	-1	1697599..1698009	+	136	57238641	exbD	CJE1801	-	biopolymer transport exbD protein
1744	 27.53	0	1698701..1699579	-	292	57238642	-	CJE1803	-	hypothetical protein
1745	 33.84	0	1699633..1699830	-	65	57238643	-	CJE1804	-	hypothetical protein
1746	 33.64	0	1699952..1700935	+	327	57238644	-	CJE1805	-	hypothetical protein
1747	 34.25	+1	1701022..1702110	-	362	57238645	aroC	CJE1806	-	chorismate synthase
1748	 32.74	0	1702110..1702784	-	224	57238646	rnc	CJE1807	-	ribonuclease III
1749	 32.88	0	1702771..1703211	-	146	57238647	rnhA	CJE1808	-	ribonuclease H
1750	 25.53	-1	1703198..1704184	-	328	57238648	-	CJE1809	-	hypothetical protein
1751	 28.44	0	1704254..1706071	+	605	57238649	dnaG	CJE1810	-	DNA primase
1752	 37.00	+1	1706153..1706425	+	90	57238650	-	CJE1811	-	NifU family protein
1753	 25.18	-1	1706412..1706963	+	183	57238651	-	CJE1812	-	hypothetical protein
1754	 32.48	0	1706947..1708230	+	427	57238652	murE	CJE1813	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1755	 33.33	0	1708234..1708545	+	103	57238653	-	CJE1814	-	hypothetical protein
1756	 29.77	0	1708542..1709636	+	364	57238654	-	CJE1815	-	PDZ domain-containing protein
1757	 32.27	0	1709633..1710478	+	281	57238655	ispA	CJE1816	-	geranyltranstransferase
1758	 35.91	+1	1710488..1712386	+	632	57238656	tkt	CJE1817	-	transketolase
1759	 31.08	0	1712388..1713497	+	369	57238657	-	CJE1818	-	ABC transporter, permease protein, putative
1760	 30.57	0	1713498..1714220	+	240	57238658	-	CJE1819	-	ABC transporter, ATP-binding protein
1761	 30.98	0	1714223..1715113	+	296	57238659	-	CJE1820	-	ABC transporter, periplasmic substrate-binding protein, putative
1762	 27.00	0	1715113..1715712	+	199	57238660	-	CJE1821	-	putative lipoprotein
1763	 28.54	0	1715768..1716268	+	166	57238661	-	CJE1822	-	hypothetical protein
1764	 35.97	+1	1716639..1717397	-	252	57238662	map	CJE1823	-	methionine aminopeptidase
1765	 30.78	0	1717407..1718150	-	247	57238663	murI	CJE1824	-	glutamate racemase
1766	 32.90	0	1718152..1718610	-	152	57238664	nlpC	CJE1825	-	lipoprotein NlpC
1767	 31.11	0	1718619..1719788	-	389	57238665	nhaA-1	CJE1826	-	Na+/H+ antiporter NhaA
1768	 28.81	0	1719785..1720933	-	382	57238666	nhaA-2	CJE1827	-	Na+/H+ antiporter NhaA
1769	 38.25	+2	1721076..1721258	-	60	57238667	-	CJE1828	-	hypothetical protein
1770	 28.95	0	1721618..1721731	+	37	57238668	-	CJE1829	-	hypothetical protein
1771	 32.66	0	1722176..1724266	+	696	57238669	-	CJE1830	-	FTR1 family iron permease
1772	 37.04	+1	1724263..1724802	+	179	57238670	-	CJE1831	-	hypothetical protein
1773	 28.28	0	1724885..1726288	+	467	57238671	-	CJE1832	-	hypothetical protein
1774	 32.25	0	1726278..1727567	+	429	57238672	-	CJE1833	-	ABC transporter, permease protein
1775	 29.76	0	1727557..1728675	+	372	57238673	-	CJE1834	-	ABC transporter, permease protein
1776	 35.93	+1	1728672..1729325	+	217	57238674	-	CJE1835	-	ABC transporter, ATP-binding protein
1777	 31.29	0	1729322..1729810	+	162	57238675	-	CJE1836	-	thiredoxin,-like protein
1778	 28.77	0	1729771..1730274	+	167	57238676	-	CJE1837	-	thioredoxin family protein
1779	 34.93	+1	1730284..1730721	-	145	57238677	-	CJE1838	-	hypothetical protein
1780	 19.44	-2	1730812..1730955	-	47	57238678	-	CJE1839	-	hypothetical protein
1781	 28.43	0	1731021..1731326	-	101	57238679	-	CJE1840	-	hypothetical protein
1782	 29.92	0	1732089..1732937	-	282	57238680	-	CJE1841	-	DNA ligase
1783	 28.05	0	1732937..1733599	-	220	57238681	-	CJE1842	-	hypothetical protein
1784	 26.96	0	1733589..1733792	-	67	57238682	-	CJE1843	-	hypothetical protein
1785	 37.59	+1	1733858..1735102	-	414	57238683	eno	CJE1844	-	phosphopyruvate hydratase
1786	 36.63	+1	1735102..1736133	-	343	57238684	recA	CJE1845	-	recombinase A
1787	 32.17	0	1736239..1737099	+	286	57238685	-	CJE1846	-	hypothetical protein
1788	 32.96	0	1737111..1737380	+	89	57238686	fliQ	CJE1847	-	flagellar biosynthesis protein FliQ
1789	 30.12	0	1737377..1738153	+	258	57238687	murB	CJE1848	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1790	 24.44	-1	1738177..1738941	-	254	57238688	-	CJE1849	-	hypothetical protein
1791	 29.54	0	1738987..1739751	-	254	57238689	cysQ	CJE1850	-	CysQ
1792	 35.62	+1	1739831..1741099	-	422	57238690	gltA	CJE1851	-	citrate synthase
1793	 30.27	0	1741214..1742389	-	391	57238691	-	CJE1852	-	sodium/hydrogen exchanger family protein
1794	 36.08	+1	1742370..1743206	-	278	57238692	bioB	CJE1853	-	biotin synthase
1795	 33.71	0	1743208..1745310	-	700	57238693	topA	CJE1854	-	DNA topoisomerase I
1796	 31.45	0	1745505..1746776	+	423	57238694	-	CJE1855	-	major facilitator superfamily protein
1797	 34.12	+1	1746804..1748069	-	421	57238695	secY	CJE1856	-	preprotein translocase subunit SecY
1798	 34.10	+1	1748069..1748461	-	130	57238696	rplO	CJE1857	-	50S ribosomal protein L15
1799	 37.61	+1	1748466..1748909	-	147	57238697	rpsE	CJE1858	-	30S ribosomal protein S5
1800	 31.09	0	1748921..1749277	-	118	57238698	rplR	CJE1859	-	50S ribosomal protein L18
1801	 32.22	0	1749287..1749823	-	178	57238699	rplF	CJE1860	-	50S ribosomal protein L6
1802	 31.31	0	1749902..1750297	-	131	57238700	rpsH	CJE1861	-	30S ribosomal protein S8
1803	 38.17	+2	1750307..1750492	-	61	57238701	rpsN	CJE1862	-	30S ribosomal protein S14
1804	 33.33	0	1750494..1751039	-	181	57238702	rplE	CJE1863	-	50S ribosomal protein L5
1805	 34.19	+1	1751043..1751276	-	77	57238703	rplX	CJE1864	-	50S ribosomal protein L24
1806	 36.86	+1	1751276..1751644	-	122	57238704	rplN	CJE1865	-	50S ribosomal protein L14
1807	 32.54	0	1751644..1751895	-	83	57238705	rpsQ	CJE1866	-	30S ribosomal protein S17
1808	 28.49	0	1751905..1752090	-	61	57238706	rpmC	CJE1867	-	50S ribosomal protein L29
1809	 36.85	+1	1752077..1752502	-	141	57238707	rplP	CJE1868	-	50S ribosomal protein L16
1810	 35.75	+1	1752505..1753206	-	233	57238708	rpsC	CJE1869	-	30S ribosomal protein S3
1811	 35.21	+1	1753206..1753631	-	141	57238709	rplV	CJE1870	-	50S ribosomal protein L22
1812	 33.33	0	1753642..1753923	-	93	57238710	rpsS	CJE1871	-	30S ribosomal protein S19
1813	 38.99	+2	1753925..1754755	-	276	57238711	rplB	CJE1872	-	50S ribosomal protein L2
1814	 32.62	0	1754757..1755038	-	93	57238712	rplW	CJE1873	-	50S ribosomal protein L23
1815	 33.82	0	1755041..1755655	-	204	57238713	rplD	CJE1874	-	50S ribosomal protein L4
1816	 35.42	+1	1755652..1756227	-	191	57238730	rplC	CJE1875	-	50S ribosomal protein L3
1817	 39.10	+2	1756237..1756548	-	103	57236893	rpsJ	CJE1876	-	30S ribosomal protein S10
1818	 18.63	-2	1756607..1756708	+	33	57236894	-	CJE1877	-	hypothetical protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.