IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1687	 34.33	+1	1643706..1644704	-	332	57238585	nuoH	CJE1743	-	NADH dehydrogenase subunit H
1688	 31.14	0	1644697..1647159	-	820	57238586	nuoG	CJE1744	-	NADH dehydrogenase subunit G
1689	 26.98	0	1647156..1647848	-	230	57238587	-	CJE1745	-	hypothetical protein
1690	 31.58	0	1647845..1648072	-	75	57238588	-	CJE1746	-	hypothetical protein
1691	 35.94	+1	1648069..1649295	-	408	57238589	nuoD	CJE1747	-	NADH dehydrogenase subunit D
1692	 30.56	0	1649297..1650088	-	263	57238590	nuoC	CJE1748	-	NADH dehydrogenase subunit C
1693	 38.10	+2	1650088..1650591	-	167	57238591	nuoB	CJE1749	-	NADH dehydrogenase subunit B
1694	 30.51	0	1650573..1650962	-	129	57238592	nuoA	CJE1750	-	NADH dehydrogenase subunit A
1695	 24.77	-1	1651075..1651740	-	221	57238593	-	CJE1751	-	peptide ABC transporter, ATP-binding protein
1696	 27.57	0	1651733..1652443	-	236	57238594	-	CJE1752	-	peptide ABC transporter, ATP-binding protein
1697	 29.02	0	1652440..1653228	-	262	57238595	-	CJE1753	-	peptide ABC transporter, permease protein
1698	 28.04	0	1653221..1654165	-	314	57238596	-	CJE1754	-	peptide ABC transporter, permease protein
1699	 30.92	0	1654165..1655700	-	511	57238597	-	CJE1755	-	peptide ABC transporter, periplasmic peptide-binding protein
1700	 30.59	0	1655809..1658580	-	923	57238598	-	CJE1756	-	oxidoreductase, FAD-binding, iron-sulfur cluster-binding
1701	 28.61	0	1658732..1659154	+	140	57238599	-	CJE1757	-	flavohemoprotein, truncation
1702	 28.80	0	1659174..1660805	-	543	57238600	-	CJE1758	-	multidrug transporter membrane component/ATP-binding component
1703	 24.35	-1	1662239..1662583	+	114	57238601	-	CJE1760	-	hypothetical protein
1704	 28.33	0	1662616..1663035	+	139	57238602	-	CJE1761	-	metallo-beta-lactamase domain-containing protein
1705	 31.51	0	1663123..1663341	+	72	57238603	infA	CJE1762	-	translation initiation factor IF-1
1706	 39.47	+2	1663513..1663626	+	37	57238604	rpmJ	CJE1763	-	50S ribosomal protein L36
1707	 33.88	0	1663629..1663994	+	121	57238605	rpsM	CJE1764	-	30S ribosomal protein S13
1708	 36.64	+1	1664004..1664396	+	130	57238606	rpsK	CJE1765	-	30S ribosomal protein S11
1709	 36.52	+1	1664424..1665050	+	208	57238607	rpsD	CJE1766	-	30S ribosomal protein S4
1710	 32.74	0	1665063..1666076	+	337	57238608	rpoA	CJE1767	-	DNA-directed RNA polymerase subunit alpha
1711	 33.62	0	1666080..1666433	+	117	57238609	rplQ	CJE1768	-	50S ribosomal protein L17
1712	 34.33	+1	1666606..1667505	+	299	57238610	hisG	CJE1769	-	ATP phosphoribosyltransferase
1713	 35.35	+1	1667513..1668799	+	428	57238611	hisD	CJE1770	-	histidinol dehydrogenase
1714	 33.52	0	1668796..1669854	+	352	57238612	hisB	CJE1771	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1715	 31.46	0	1669851..1670438	+	195	57238613	hisH	CJE1772	-	imidazole glycerol phosphate synthase subunit HisH
1716	 34.56	+1	1670435..1671166	+	243	57238614	hisA	CJE1773	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1717	 26.30	0	1671151..1672089	+	312	57238615	-	CJE1774	-	HrgA protein
1718	 32.94	0	1672090..1672857	+	255	57238616	hisF-2	CJE1775	-	imidazole glycerol phosphate synthase subunit HisF
1719	 32.85	0	1672859..1673482	+	207	57238617	hisI	CJE1776	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1720	 32.99	0	1673507..1674667	-	386	57238618	-	CJE1777	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative
1721	 34.60	+1	1674693..1675799	-	368	57238619	mrp	CJE1778	-	ATP/GTP-binding protein
1722	 33.42	0	1675922..1677037	+	371	57238620	ispDF	CJE1779	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1723	 24.77	-1	1677034..1677921	+	295	57238621	-	CJE1780	-	DNA-binding response regulator, putative
1724	 29.46	0	1677899..1679059	+	386	57238622	-	CJE1781	-	ATP-sulfurylase family protein
1725	 29.34	0	1679064..1679564	+	166	57238623	pgpA	CJE1782	-	phosphatidylglycerophosphatase A
1726	 33.33	0	1679643..1679906	+	87	57238624	rpsT	CJE1783	-	30S ribosomal protein S20
1727	 35.21	+1	1679925..1680992	+	355	57238625	prfA	CJE1784	-	peptide chain release factor 1
1728	 31.22	0	1681006..1681761	-	251	57238626	-	CJE1785	-	hypothetical protein
1729	 31.15	0	1681954..1684110	+	718	57238627	chuA	CJE1786	-	TonB-dependent heme receptor
1730	 32.52	0	1684085..1685071	+	328	57238628	-	CJE1787	-	hemin ABC transporter, permease protein, putative
1731	 27.80	0	1685071..1685847	+	258	57238629	-	CJE1788	-	hemin ABC transporter, ATP-binding protein, putative
1732	 28.50	0	1685844..1686650	+	268	57238630	-	CJE1789	-	hemin ABC transporter, periplasmic hemin-binding protein, putative
1733	 33.17	0	1687671..1688930	+	419	57238631	kgtP	CJE1791	-	alpha-ketoglutarate permease
1734	 30.88	0	1688916..1689935	-	339	57238632	mutY	CJE1792	-	A/G-specific adenine glycosylase
1735	 26.43	0	1690008..1690760	+	250	57238633	-	CJE1793	-	hypothetical protein
1736	 32.11	0	1691440..1692420	+	326	57238634	-	CJE1794	-	riboflavin biosynthesis protein RibD, putative
1737	 24.33	-1	1692401..1692922	+	173	57238635	-	CJE1795	-	hypothetical protein
1738	 34.65	+1	1692930..1694294	-	454	57238636	sdaA	CJE1796	-	L-serine ammonia-lyase
1739	 31.41	0	1694309..1695559	-	416	57238637	sdaC	CJE1797	-	serine transporter
1740	 29.98	0	1695818..1696234	-	138	57238638	-	CJE1798	-	hypothetical protein
1741	 25.54	-1	1696300..1697043	-	247	57238639	-	CJE1799	-	hypothetical protein
1742	 31.46	0	1697202..1697627	+	141	57238640	exbB-2	CJE1800	-	TonB system transport protein ExbB
1743	 25.06	-1	1697599..1698009	+	136	57238641	exbD	CJE1801	-	biopolymer transport exbD protein
1744	 27.53	0	1698701..1699579	-	292	57238642	-	CJE1803	-	hypothetical protein
1745	 33.84	0	1699633..1699830	-	65	57238643	-	CJE1804	-	hypothetical protein
1746	 33.64	0	1699952..1700935	+	327	57238644	-	CJE1805	-	hypothetical protein
1747	 34.25	+1	1701022..1702110	-	362	57238645	aroC	CJE1806	-	chorismate synthase
1748	 32.74	0	1702110..1702784	-	224	57238646	rnc	CJE1807	-	ribonuclease III
1749	 32.88	0	1702771..1703211	-	146	57238647	rnhA	CJE1808	-	ribonuclease H
1750	 25.53	-1	1703198..1704184	-	328	57238648	-	CJE1809	-	hypothetical protein
1751	 28.44	0	1704254..1706071	+	605	57238649	dnaG	CJE1810	-	DNA primase
1752	 37.00	+1	1706153..1706425	+	90	57238650	-	CJE1811	-	NifU family protein
1753	 25.18	-1	1706412..1706963	+	183	57238651	-	CJE1812	-	hypothetical protein
1754	 32.48	0	1706947..1708230	+	427	57238652	murE	CJE1813	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1755	 33.33	0	1708234..1708545	+	103	57238653	-	CJE1814	-	hypothetical protein
1756	 29.77	0	1708542..1709636	+	364	57238654	-	CJE1815	-	PDZ domain-containing protein
1757	 32.27	0	1709633..1710478	+	281	57238655	ispA	CJE1816	-	geranyltranstransferase
1758	 35.91	+1	1710488..1712386	+	632	57238656	tkt	CJE1817	-	transketolase
1759	 31.08	0	1712388..1713497	+	369	57238657	-	CJE1818	-	ABC transporter, permease protein, putative
1760	 30.57	0	1713498..1714220	+	240	57238658	-	CJE1819	-	ABC transporter, ATP-binding protein
1761	 30.98	0	1714223..1715113	+	296	57238659	-	CJE1820	-	ABC transporter, periplasmic substrate-binding protein, putative
1762	 27.00	0	1715113..1715712	+	199	57238660	-	CJE1821	-	putative lipoprotein
1763	 28.54	0	1715768..1716268	+	166	57238661	-	CJE1822	-	hypothetical protein
1764	 35.97	+1	1716639..1717397	-	252	57238662	map	CJE1823	-	methionine aminopeptidase
1765	 30.78	0	1717407..1718150	-	247	57238663	murI	CJE1824	-	glutamate racemase
1766	 32.90	0	1718152..1718610	-	152	57238664	nlpC	CJE1825	-	lipoprotein NlpC
1767	 31.11	0	1718619..1719788	-	389	57238665	nhaA-1	CJE1826	-	Na+/H+ antiporter NhaA
1768	 28.81	0	1719785..1720933	-	382	57238666	nhaA-2	CJE1827	-	Na+/H+ antiporter NhaA
1769	 38.25	+2	1721076..1721258	-	60	57238667	-	CJE1828	-	hypothetical protein
1770	 28.95	0	1721618..1721731	+	37	57238668	-	CJE1829	-	hypothetical protein
1771	 32.66	0	1722176..1724266	+	696	57238669	-	CJE1830	-	FTR1 family iron permease
1772	 37.04	+1	1724263..1724802	+	179	57238670	-	CJE1831	-	hypothetical protein
1773	 28.28	0	1724885..1726288	+	467	57238671	-	CJE1832	-	hypothetical protein
1774	 32.25	0	1726278..1727567	+	429	57238672	-	CJE1833	-	ABC transporter, permease protein
1775	 29.76	0	1727557..1728675	+	372	57238673	-	CJE1834	-	ABC transporter, permease protein
1776	 35.93	+1	1728672..1729325	+	217	57238674	-	CJE1835	-	ABC transporter, ATP-binding protein
1777	 31.29	0	1729322..1729810	+	162	57238675	-	CJE1836	-	thiredoxin,-like protein
1778	 28.77	0	1729771..1730274	+	167	57238676	-	CJE1837	-	thioredoxin family protein
1779	 34.93	+1	1730284..1730721	-	145	57238677	-	CJE1838	-	hypothetical protein
1780	 19.44	-2	1730812..1730955	-	47	57238678	-	CJE1839	-	hypothetical protein
1781	 28.43	0	1731021..1731326	-	101	57238679	-	CJE1840	-	hypothetical protein
1782	 29.92	0	1732089..1732937	-	282	57238680	-	CJE1841	-	DNA ligase
1783	 28.05	0	1732937..1733599	-	220	57238681	-	CJE1842	-	hypothetical protein
1784	 26.96	0	1733589..1733792	-	67	57238682	-	CJE1843	-	hypothetical protein
1785	 37.59	+1	1733858..1735102	-	414	57238683	eno	CJE1844	-	phosphopyruvate hydratase
1786	 36.63	+1	1735102..1736133	-	343	57238684	recA	CJE1845	-	recombinase A
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.