IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1577	 26.75	0	1528121..1528834	+	237	57238475	-	CJE1625	-	hypothetical protein
1578	 28.16	0	1528817..1529782	-	321	57238476	-	CJE1626	-	PP-loop family protein
1579	 34.47	+1	1529772..1531091	-	439	57238477	yliG	CJE1627	-	putative tRNA modifying protein
1580	 36.89	+1	1531165..1532262	+	365	57238478	prfB	CJE1628	-	peptide chain release factor 2
1581	 25.00	-1	1532420..1532599	-	59	57238479	-	CJE1629	-	hypothetical protein
1582	 29.63	0	1532637..1532771	+	44	57238480	-	CJE1630	-	hypothetical protein
1583	 30.83	0	1532855..1533973	-	372	57238481	truD	CJE1631	-	tRNA pseudouridine synthase D
1584	 29.56	0	1533942..1534763	-	273	57238482	-	CJE1632	-	thiamine monophosphate kinase
1585	 25.98	-1	1534850..1535923	+	357	57238483	-	CJE1633	-	hypothetical protein
1586	 27.86	0	1535920..1536303	+	127	57238484	-	CJE1634	-	hypothetical protein
1587	 26.35	0	1536293..1536979	+	228	57238485	-	CJE1635	-	site-specific DNA methyltransferase, putative
1588	 36.68	+1	1537038..1538084	+	348	57238486	flgI	CJE1636	-	flagellar basal body P-ring protein
1589	 30.41	0	1538084..1538425	+	113	57238487	-	CJE1637	-	hypothetical protein
1590	 32.32	0	1538488..1538685	+	65	57238488	-	CJE1638	-	hypothetical protein
1591	 29.43	0	1538728..1539162	+	144	57238489	-	CJE1639	-	hypothetical protein
1592	 33.83	0	1539172..1540998	+	608	57238490	flgK	CJE1640	-	flagellar hook-associated protein FlgK
1593	 27.84	0	1541015..1541779	+	254	57238491	-	CJE1641	-	hypothetical protein
1594	 32.68	0	1541783..1542547	+	254	57238492	-	CJE1642	-	hypothetical protein
1595	 25.80	-1	1542540..1543721	-	393	57238493	ctsF	CJE1643	-	general secretory pathway protein F
1596	 29.23	0	1543718..1545277	-	519	57238494	ctsE	CJE1644	-	general secretory pathway protein E
1597	 25.00	-1	1545267..1545854	-	195	57238495	ctsX	CJE1645	-	transformation system protein
1598	 23.15	-1	1545858..1546466	-	202	57238496	ctsP	CJE1646	-	transformation system protein
1599	 27.81	0	1546459..1547871	-	470	57238497	ctsD	CJE1647	-	general secretory pathway protein D
1600	 21.15	-2	1547849..1548160	-	103	57238498	ctsR	CJE1648	-	transformation system protein
1601	 36.09	+1	1548184..1551744	-	1186	57238499	-	CJE1649	-	pyruvate ferredoxin/flavodoxin oxidoreductase
1602	 29.13	0	1551837..1552478	-	213	57238500	-	CJE1650	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
1603	 31.77	0	1552478..1553437	-	319	57238501	cadF	CJE1651	-	fibronectin-binding protein
1604	 38.97	+2	1553562..1553951	-	129	57238502	rpsI	CJE1652	-	30S ribosomal protein S9
1605	 33.33	0	1553954..1554379	-	141	57238503	rplM	CJE1653	-	50S ribosomal protein L13
1606	 26.75	0	1554463..1557228	-	921	57238504	-	CJE1654	-	ATP-dependent DNA helicase UvrD
1607	 25.81	-1	1557225..1559591	-	788	57238505	-	CJE1655	-	hypothetical protein
1608	 25.48	-1	1559588..1560109	-	173	57238506	-	CJE1656	-	putative lipoprotein
1609	 28.86	0	1560096..1560698	-	200	57238507	-	CJE1657	-	hypothetical protein
1610	 36.27	+1	1560695..1560796	-	33	57238508	-	CJE1658	-	hypothetical protein
1611	 33.79	0	1560793..1561011	-	72	57238509	-	CJE1659	-	hypothetical protein
1612	 33.91	0	1561011..1561874	-	287	57238510	ccoP	CJE1660	-	cytochrome c oxidase, cbb3-type, subunit III
1613	 28.09	0	1561874..1562140	-	88	57238511	ccoQ	CJE1661	-	cytochrome c oxidase, cbb3-type, subunit IV
1614	 33.78	0	1562142..1562807	-	221	57238512	ccoO	CJE1662	-	cytochrome c oxidase, cbb3-type, subunit II
1615	 35.58	+1	1562820..1564286	-	488	57238513	ccoN	CJE1663	-	cytochrome c oxidase, cbb3-type, subunit I
1616	 29.07	0	1564412..1565092	-	226	57238514	-	CJE1664	-	DNA-binding response regulator
1617	 25.08	-1	1565095..1566306	-	403	57238515	-	CJE1665	-	sensory box sensor histidine kinase, putative
1618	 24.24	-1	1566303..1566962	-	219	57238516	-	CJE1666	-	hypothetical protein
1619	 30.21	0	1566959..1568077	-	372	57238517	carA	CJE1667	-	carbamoyl phosphate synthase small subunit
1620	 26.81	0	1568077..1568628	-	183	57238518	-	CJE1668	-	hypothetical protein
1621	 30.44	0	1568721..1569239	-	172	57238519	-	CJE1669	-	hypothetical protein
1622	 31.93	0	1569232..1569660	-	142	57238520	-	CJE1670	-	hypothetical protein
1623	 35.01	+1	1569657..1570907	-	416	57238521	purA	CJE1671	-	adenylosuccinate synthetase
1624	 19.19	-2	1571036..1571134	+	32	57238522	-	CJE1672	-	hypothetical protein
1625	 31.27	0	1571172..1572380	+	402	57238523	-	CJE1673	-	putative inner membrane protein
1626	 35.09	+1	1572384..1572611	+	75	57238524	-	CJE1674	-	hypothetical protein
1627	 34.49	+1	1572627..1574096	-	489	57238525	putP	CJE1675	-	sodium/proline permease
1628	 30.21	0	1574114..1577602	-	1162	57238526	-	CJE1676	-	bifunctional putA protein, putative
1629	 30.50	0	1577733..1578755	-	340	57238527	selD	CJE1677	-	selenide, water dikinase
1630	 26.35	0	1578765..1579337	-	190	57238528	-	CJE1678	-	hypothetical protein
1631	 30.34	0	1579448..1581550	-	700	57238529	-	CJE1679	-	methyl-accepting chemotaxis protein
1632	 29.27	0	1581663..1582400	-	245	57238530	-	CJE1680	-	molybdate transport repressor
1633	 32.44	0	1582393..1583175	-	260	57238531	fdhD	CJE1681	-	formate dehydrogenase accessory protein
1634	 31.73	0	1583342..1584274	-	310	57238532	fdhC	CJE1682	-	formate dehydrogenase, cytochrome b subunit
1635	 36.45	+1	1584271..1584912	-	213	57238533	fdhB	CJE1683	-	formate dehydrogenase, iron-sulfur subunit
1636	 37.11	+1	1584909..1587713	-	934	57238534	fdhA	CJE1684	-	formate dehydrogenase, alpha subunit, selenocysteine-containing
1637	 34.90	+1	1587713..1587904	-	63	57238535	-	CJE1685	-	Tat pathway signal sequence domain-containing protein
1638	 27.78	0	1587879..1588580	-	233	57238536	-	CJE1686	-	hypothetical protein
1639	 17.54	-2	1588748..1588861	-	37	57238537	-	CJE1687	-	hypothetical protein
1640	 31.85	0	1588897..1590045	-	382	57238538	nspC	CJE1688	-	carboxynorspermidine decarboxylase
1641	 32.88	0	1590169..1591710	+	513	57238539	-	CJE1689	-	oxidoreductase, putative
1642	 27.93	0	1591712..1591933	+	73	57238540	-	CJE1690	-	thiS family protein
1643	 33.56	0	1591934..1592377	+	147	57238541	-	CJE1691	-	molybdopterin converting factor, subunit 2
1644	 29.98	0	1592374..1592790	+	138	57238542	-	CJE1692	-	hypothetical protein
1645	 35.18	+1	1592793..1593983	+	396	57238543	-	CJE1693	-	molybdopterin biosynthesis MoeA protein, putative
1646	 26.39	0	1594481..1594912	-	143	57238544	cas2	CJE1694	-	CRISPR-associated Cas2 family protein
1647	 30.75	0	1594905..1595795	-	296	57238545	cas1	CJE1695	-	CRISPR-associated Cas1 family protein
1648	 31.07	0	1598988..1599164	+	58	57238546	-	CJE1698	-	hypothetical protein
1649	 34.75	+1	1600373..1601362	-	329	57238547	purM	CJE1700	-	phosphoribosylaminoimidazole synthetase
1650	 27.23	0	1601423..1602028	+	201	57238548	coaE	CJE1701	-	dephospho-CoA kinase
1651	 32.27	0	1602025..1602774	+	249	57238549	dapF	CJE1702	-	diaminopimelate epimerase
1652	 29.37	0	1602749..1603480	+	243	57238550	-	CJE1703	-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein
1653	 22.93	-1	1603477..1604514	-	345	57238551	-	CJE1704	-	hypothetical protein
1654	 32.44	0	1604579..1605028	-	149	57238552	-	CJE1705	-	bacterioferritin, putative
1655	 30.38	0	1605155..1606375	-	406	57238553	pgi	CJE1706	-	glucose-6-phosphate isomerase
1656	 34.18	+1	1606369..1607193	-	274	57238554	galU	CJE1707	-	UTP-glucose-1-phosphate uridylyltransferase
1657	 36.37	+1	1607275..1609248	-	657	57238555	acs	CJE1708	-	acetyl-CoA synthetase
1658	 23.29	-1	1609387..1610382	-	331	57238556	-	CJE1709	-	tungsten ABC transporter, ATP-binding protein, putative
1659	 32.02	0	1610384..1611070	-	228	57238557	-	CJE1710	-	tungstate ABC transporter, permease protein, putative
1660	 32.10	0	1611149..1611958	+	269	57238558	-	CJE1711	-	tungstate ABC transporter, periplasmic tungstate-binding protein, putative
1661	 33.98	0	1612100..1612867	+	255	57238559	-	CJE1712	-	hypothetical protein
1662	 33.06	0	1612877..1613617	+	246	57238560	-	CJE1713	-	hypothetical protein
1663	 31.88	0	1613598..1614563	+	321	57238561	-	CJE1714	-	hypothetical protein
1664	 29.43	0	1614560..1615456	-	298	57238562	-	CJE1715	-	integral membrane protein
1665	 32.12	0	1615489..1616067	-	192	57238563	-	CJE1716	-	flavodoxin-like fold domain-containing protein
1666	 30.75	0	1616167..1616514	+	115	57238564	-	CJE1717	-	transcriptional regulator, putative
1667	 39.65	+2	1616954..1618030	-	358	57238565	-	CJE1719	-	zinc-binding dehydrogenase family oxidoreductase
1668	 22.69	-1	1620475..1622805	+	776	57238566	-	CJE1721	-	RloC protein, putative
1669	 25.68	-1	1624123..1625193	+	356	57238567	-	CJE1723	-	MloA protein, putative
1670	 30.03	0	1625194..1626678	+	494	57238568	hsdM	CJE1724	-	type I restriction-modification system, M subunit
1671	 33.85	0	1626756..1627139	-	127	57238569	-	CJE1725	-	4-carboxymuconolactone decarboxylase, putative
1672	 26.79	0	1627119..1627286	+	55	57238570	-	CJE1726	-	hypothetical protein
1673	 35.95	+1	1627327..1627746	-	139	57238571	-	CJE1727	-	hypothetical protein
1674	 29.76	0	1627804..1628979	-	391	57238572	-	CJE1728	-	transporter, putative
1675	 26.27	0	1629937..1630884	+	315	57238573	-	CJE1730	-	permease, putative
1676	 29.87	0	1630894..1631211	+	105	57238574	arsR	CJE1731	-	arsenical resistance operon repressor
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.