IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1513	 25.03	-1	1457884..1460232	-	782	57238411	-	CJE1559	-	GlnD family protein
1514	 33.33	0	1460376..1461440	+	354	57238412	-	CJE1560	-	hypothetical protein
1515	 34.09	+1	1461450..1462769	+	439	57238413	-	CJE1561	-	xanthine/uracil permease family protein
1516	 29.28	0	1462783..1463226	+	147	57238414	-	CJE1562	-	putative nucleotide phosphoribosyltransferase
1517	 34.76	+1	1463271..1463969	+	232	57238415	-	CJE1563	-	VacJ family lipoprotein
1518	 28.42	0	1463979..1464548	+	189	57238416	-	CJE1564	-	toluene tolerance protein, putative
1519	 29.57	0	1464548..1467019	+	823	57238417	-	CJE1565	-	hypothetical protein
1520	 31.34	0	1467050..1467652	-	200	57238418	-	CJE1566	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1521	 30.65	0	1467818..1469119	+	433	57238419	-	CJE1567	-	multidrug resistance efflux transporter, putative
1522	 31.30	0	1469116..1470789	-	557	57238420	-	CJE1568	-	iron-sulfur cluster-binding domain-containing protein
1523	 29.71	0	1470867..1472189	+	440	57238421	selA	CJE1569	-	selenocysteine synthase
1524	 25.86	-1	1472186..1473991	+	601	57238422	selB	CJE1570	-	selenocysteine-specific elongation factor
1525	 29.11	0	1474040..1474750	+	236	57238423	-	CJE1571	-	hypothetical protein
1526	 26.55	0	1474756..1475286	+	176	57238424	-	CJE1572	-	putative lipoprotein
1527	 35.98	+1	1475331..1475822	-	163	57238425	fldA	CJE1573	-	flavodoxin FldA
1528	 22.41	-1	1475822..1476517	-	231	57238426	-	CJE1574	-	hypothetical protein
1529	 28.89	0	1476520..1476834	-	104	57238427	-	CJE1575	-	hypothetical protein
1530	 32.98	0	1477005..1478429	+	474	57238428	katA	CJE1576	-	catalase
1531	 28.24	0	1478486..1478956	+	156	57238429	-	CJE1577	-	ankyrin repeat-containing protein
1532	 27.55	0	1478957..1479613	-	218	57238430	-	CJE1578	-	hypothetical protein
1533	 32.78	0	1479781..1480143	+	120	57238431	-	CJE1579	-	endoribonuclease L-PSP, putative
1534	 35.22	+1	1481600..1482763	+	387	57238432	metC	CJE1581	-	cystathionine beta-lyase
1535	 35.53	+1	1482773..1484140	+	455	57238433	purB-2	CJE1582	-	adenylosuccinate lyase
1536	 34.00	0	1484149..1485489	+	446	57238434	-	CJE1583	-	MmgE/PrpD family protein
1537	 28.00	0	1485571..1485795	+	74	57238435	-	CJE1584	-	feoA family protein
1538	 31.86	0	1487629..1489122	-	497	57238436	-	CJE1586	-	hydrogenase, (NiFe)/(NiFeSe) small subunit family
1539	 33.09	0	1489126..1489950	-	274	57238437	fabI	CJE1587	-	enoyl-(acyl carrier protein) reductase
1540	 30.80	0	1489954..1490625	-	223	57238438	tpiA	CJE1588	-	triosephosphate isomerase
1541	 35.08	+1	1490622..1491824	-	400	57238439	pgk	CJE1589	-	phosphoglycerate kinase
1542	 35.44	+1	1491827..1492825	-	332	57238440	gapA	CJE1590	-	glyceraldehyde 3-phosphate dehydrogenase A
1543	 28.94	0	1492885..1493430	+	181	57238441	nadD	CJE1591	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
1544	 30.28	0	1493458..1493784	+	108	57238442	-	CJE1592	-	hypothetical protein
1545	 26.72	0	1493815..1494192	-	125	57238443	-	CJE1593	-	hypothetical protein
1546	 31.87	0	1494240..1495610	-	456	57238444	algC	CJE1594	-	phosphomannomutase/phosphoglucomutase
1547	 31.84	0	1495732..1496268	+	178	57238445	fliL	CJE1595	-	flagellar basal body-associated protein FliL
1548	 33.05	0	1496268..1496615	+	115	57238446	acpS	CJE1596	-	4'-phosphopantetheinyl transferase
1549	 34.52	+1	1496616..1497035	-	139	57238447	-	CJE1597	-	hypothetical protein
1550	 35.24	+1	1497032..1498393	-	453	57238448	-	CJE1598	-	cytochrome P450 family protein
1551	 26.11	-1	1498390..1499511	-	373	57238449	-	CJE1599	-	hypothetical protein
1552	 28.35	0	1499584..1500768	-	394	57238450	kpsS	CJE1600	-	capsule polysaccharide export protein KpsS
1553	 28.56	0	1500765..1502837	-	690	57238451	kpsC	CJE1601	-	capsule polysaccharide export protein KpsC
1554	 24.53	-1	1502815..1504734	-	639	57238452	-	CJE1602	-	capsular polysaccharide biosynthesis protein, putative
1555	 25.65	-1	1504703..1506655	-	650	57238453	-	CJE1603	-	capsular polysaccharide biosynthesis protein, putative
1556	 26.11	-1	1506655..1508136	-	493	57238454	-	CJE1604	-	capsular polysaccharide biosynthesis protein, putative
1557	 26.03	-1	1508138..1508863	-	241	57238455	-	CJE1605	-	capsular polysaccharide biosynthesis protein, putative
1558	 25.12	-1	1508850..1510151	-	433	57238456	-	CJE1606	-	haloacid dehalogenase-like hydrolase
1559	 25.25	-1	1510144..1510737	-	197	57238457	-	CJE1607	-	hypothetical protein
1560	 26.14	-1	1510712..1511392	-	226	57238458	-	CJE1608	-	capsular biosynthesis nucleotidyltransferase, putative
1561	 32.34	0	1511380..1511985	-	201	57238459	gmhA-2	CJE1609	-	phosphoheptose isomerase
1562	 32.94	0	1511973..1512992	-	339	57238460	-	CJE1610	-	capsular biosynthesis sugar kinase, putative
1563	 34.01	0	1512989..1514020	-	343	57238461	wcbK	CJE1611	-	GDP-mannose 4,6-dehydratase
1564	 28.10	0	1514017..1515066	-	349	57238462	fcl	CJE1612	-	GDP-L-fucose synthetase
1565	 23.09	-1	1515078..1516688	-	536	57238463	-	CJE1613	-	capsular polysaccharide biosynthesis protein, putative
1566	 24.01	-1	1516685..1518121	-	478	57238464	-	CJE1614	-	hypothetical protein
1567	 27.53	0	1518157..1519500	-	447	57238465	-	CJE1615	-	capsular polysaccharide biosynthesis glycosyltransferase WcbB, putative
1568	 22.22	-2	1519503..1521104	-	533	57238466	-	CJE1616	-	capsular polysaccharide biosynthesis protein, putative
1569	 36.60	+1	1521101..1522048	-	315	57238467	kpsF	CJE1617	-	arabinose-5-phosphate isomerase
1570	 31.40	0	1522058..1523716	-	552	57238468	kpsD	CJE1618	-	capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein
1571	 29.58	0	1523718..1524836	-	372	57238469	kpsE	CJE1619	-	capsular polysaccharide ABC transporter
1572	 33.63	0	1524836..1525498	-	220	57238470	kpsT	CJE1620	-	capsular polysaccharide ABC transporter, ATP-binding protein
1573	 28.86	0	1525495..1526277	-	260	57238471	kpsM	CJE1621	-	capsular polysaccharide ABC transporter, permease protein
1574	 28.92	0	1526349..1526756	-	135	57238472	-	CJE1622	-	hypothetical protein
1575	 29.08	0	1526831..1527394	+	187	57238473	-	CJE1623	-	hypothetical protein
1576	 29.86	0	1527430..1528119	+	229	57238474	-	CJE1624	-	deoxyuridine triphosphatase domain-containing protein
1577	 26.75	0	1528121..1528834	+	237	57238475	-	CJE1625	-	hypothetical protein
1578	 28.16	0	1528817..1529782	-	321	57238476	-	CJE1626	-	PP-loop family protein
1579	 34.47	+1	1529772..1531091	-	439	57238477	yliG	CJE1627	-	putative tRNA modifying protein
1580	 36.89	+1	1531165..1532262	+	365	57238478	prfB	CJE1628	-	peptide chain release factor 2
1581	 25.00	-1	1532420..1532599	-	59	57238479	-	CJE1629	-	hypothetical protein
1582	 29.63	0	1532637..1532771	+	44	57238480	-	CJE1630	-	hypothetical protein
1583	 30.83	0	1532855..1533973	-	372	57238481	truD	CJE1631	-	tRNA pseudouridine synthase D
1584	 29.56	0	1533942..1534763	-	273	57238482	-	CJE1632	-	thiamine monophosphate kinase
1585	 25.98	-1	1534850..1535923	+	357	57238483	-	CJE1633	-	hypothetical protein
1586	 27.86	0	1535920..1536303	+	127	57238484	-	CJE1634	-	hypothetical protein
1587	 26.35	0	1536293..1536979	+	228	57238485	-	CJE1635	-	site-specific DNA methyltransferase, putative
1588	 36.68	+1	1537038..1538084	+	348	57238486	flgI	CJE1636	-	flagellar basal body P-ring protein
1589	 30.41	0	1538084..1538425	+	113	57238487	-	CJE1637	-	hypothetical protein
1590	 32.32	0	1538488..1538685	+	65	57238488	-	CJE1638	-	hypothetical protein
1591	 29.43	0	1538728..1539162	+	144	57238489	-	CJE1639	-	hypothetical protein
1592	 33.83	0	1539172..1540998	+	608	57238490	flgK	CJE1640	-	flagellar hook-associated protein FlgK
1593	 27.84	0	1541015..1541779	+	254	57238491	-	CJE1641	-	hypothetical protein
1594	 32.68	0	1541783..1542547	+	254	57238492	-	CJE1642	-	hypothetical protein
1595	 25.80	-1	1542540..1543721	-	393	57238493	ctsF	CJE1643	-	general secretory pathway protein F
1596	 29.23	0	1543718..1545277	-	519	57238494	ctsE	CJE1644	-	general secretory pathway protein E
1597	 25.00	-1	1545267..1545854	-	195	57238495	ctsX	CJE1645	-	transformation system protein
1598	 23.15	-1	1545858..1546466	-	202	57238496	ctsP	CJE1646	-	transformation system protein
1599	 27.81	0	1546459..1547871	-	470	57238497	ctsD	CJE1647	-	general secretory pathway protein D
1600	 21.15	-2	1547849..1548160	-	103	57238498	ctsR	CJE1648	-	transformation system protein
1601	 36.09	+1	1548184..1551744	-	1186	57238499	-	CJE1649	-	pyruvate ferredoxin/flavodoxin oxidoreductase
1602	 29.13	0	1551837..1552478	-	213	57238500	-	CJE1650	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
1603	 31.77	0	1552478..1553437	-	319	57238501	cadF	CJE1651	-	fibronectin-binding protein
1604	 38.97	+2	1553562..1553951	-	129	57238502	rpsI	CJE1652	-	30S ribosomal protein S9
1605	 33.33	0	1553954..1554379	-	141	57238503	rplM	CJE1653	-	50S ribosomal protein L13
1606	 26.75	0	1554463..1557228	-	921	57238504	-	CJE1654	-	ATP-dependent DNA helicase UvrD
1607	 25.81	-1	1557225..1559591	-	788	57238505	-	CJE1655	-	hypothetical protein
1608	 25.48	-1	1559588..1560109	-	173	57238506	-	CJE1656	-	putative lipoprotein
1609	 28.86	0	1560096..1560698	-	200	57238507	-	CJE1657	-	hypothetical protein
1610	 36.27	+1	1560695..1560796	-	33	57238508	-	CJE1658	-	hypothetical protein
1611	 33.79	0	1560793..1561011	-	72	57238509	-	CJE1659	-	hypothetical protein
1612	 33.91	0	1561011..1561874	-	287	57238510	ccoP	CJE1660	-	cytochrome c oxidase, cbb3-type, subunit III
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.