IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1476	 34.32	+1	1410963..1411670	+	235	57238377	ptmB	CJE1520	-	posttranslational flagellin modification protein B
1477	 34.11	+1	1411670..1412440	+	256	57238378	ptmA	CJE1521	-	flagellin modification protein A
1478	 26.45	0	1412428..1414389	+	653	57238379	maf-1	CJE1522	-	motility accessory factor
1479	 27.91	0	1414365..1416245	+	626	57238380	maf-2	CJE1523	-	motility accessory factor
1480	 26.24	0	1416258..1418174	+	638	57238381	maf-3	CJE1524	-	motility accessory factor
1481	 27.94	0	1418150..1420057	+	635	57238382	maf-4	CJE1525	-	motility accessory factor
1482	 37.22	+1	1420088..1421809	-	573	57238729	flaB	CJE1526	-	flagellin
1483	 25.49	-1	1421811..1421912	-	33	57238715	-	CJE1527	-	hypothetical protein
1484	 37.40	+1	1421954..1423675	-	573	57238714	flaA	CJE1528	-	flagellin
1485	 28.66	0	1423772..1425589	-	605	57238383	maf-5	CJE1529	-	motility accessory factor
1486	 27.03	0	1425586..1427409	-	607	57238384	maf-6	CJE1530	-	motility accessory factor
1487	 30.68	0	1427419..1428660	-	413	57238385	-	CJE1531	-	hypothetical protein
1488	 29.07	0	1428660..1429175	-	171	57238386	ctsG	CJE1532	-	transformation system protein
1489	 31.55	0	1429176..1430183	-	335	57238387	gcp	CJE1533	-	O-sialoglycoprotein endopeptidase
1490	 32.62	0	1430180..1431574	-	464	57238388	-	CJE1534	-	hypothetical protein
1491	 31.28	0	1431576..1432646	-	356	57238389	dxr	CJE1535	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1492	 34.30	+1	1432643..1433368	-	241	57238390	cdsA	CJE1536	-	phosphatidate cytidylyltransferase
1493	 32.74	0	1433377..1433715	-	112	57238391	-	CJE1537	-	hypothetical protein
1494	 26.83	0	1433717..1435024	-	435	57238392	-	CJE1538	-	fibronectin/fibrinogen binding protein, putative
1495	 26.56	0	1435086..1435661	+	191	57238393	-	CJE1539	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
1496	 28.28	0	1435658..1436647	+	329	57238394	pldA	CJE1540	-	phospholipase A
1497	 31.06	0	1436733..1437701	+	322	57238395	ceuB	CJE1541	-	enterochelin ABC transporter, permease protein
1498	 28.75	0	1437694..1438632	+	312	57238396	ceuC	CJE1542	-	enterochelin ABC transporter, permease protein
1499	 28.57	0	1438629..1439384	+	251	57238397	ceuD	CJE1543	-	enterochelin ABC transporter, ATP-binding protein
1500	 29.73	0	1440614..1441168	-	184	57238398	-	CJE1545	-	hypothetical protein
1501	 34.15	+1	1441303..1443135	-	610	57238399	nrfA	CJE1546	-	cytochrome c552
1502	 34.50	+1	1443150..1443665	-	171	57238400	nrfH	CJE1547	-	cytochrome c-type protein nrfH
1503	 31.94	0	1443853..1445937	+	694	57238401	ppk	CJE1548	-	polyphosphate kinase
1504	 34.60	+1	1447310..1447705	-	131	57238402	-	CJE1550	-	hypothetical protein
1505	 35.62	+1	1447900..1448118	-	72	57238403	-	CJE1551	-	hypothetical protein
1506	 32.84	0	1448158..1448358	-	66	57238404	-	CJE1552	-	hypothetical protein
1507	 31.35	0	1448923..1449375	-	150	57238405	-	CJE1553	-	hypothetical protein
1508	 35.22	+1	1449424..1450431	+	335	57238406	ruvB	CJE1554	-	Holliday junction DNA helicase B
1509	 27.59	0	1450435..1451478	+	347	57238407	-	CJE1555	-	hypothetical protein
1510	 36.35	+1	1451508..1452899	-	463	57238408	fumC	CJE1556	-	fumarate hydratase
1511	 29.14	0	1452955..1456080	-	1041	57238409	-	CJE1557	-	serine protease
1512	 34.45	+1	1456083..1457879	-	598	57238410	glmS	CJE1558	-	D-fructose-6-phosphate amidotransferase
1513	 25.03	-1	1457884..1460232	-	782	57238411	-	CJE1559	-	GlnD family protein
1514	 33.33	0	1460376..1461440	+	354	57238412	-	CJE1560	-	hypothetical protein
1515	 34.09	+1	1461450..1462769	+	439	57238413	-	CJE1561	-	xanthine/uracil permease family protein
1516	 29.28	0	1462783..1463226	+	147	57238414	-	CJE1562	-	putative nucleotide phosphoribosyltransferase
1517	 34.76	+1	1463271..1463969	+	232	57238415	-	CJE1563	-	VacJ family lipoprotein
1518	 28.42	0	1463979..1464548	+	189	57238416	-	CJE1564	-	toluene tolerance protein, putative
1519	 29.57	0	1464548..1467019	+	823	57238417	-	CJE1565	-	hypothetical protein
1520	 31.34	0	1467050..1467652	-	200	57238418	-	CJE1566	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1521	 30.65	0	1467818..1469119	+	433	57238419	-	CJE1567	-	multidrug resistance efflux transporter, putative
1522	 31.30	0	1469116..1470789	-	557	57238420	-	CJE1568	-	iron-sulfur cluster-binding domain-containing protein
1523	 29.71	0	1470867..1472189	+	440	57238421	selA	CJE1569	-	selenocysteine synthase
1524	 25.86	-1	1472186..1473991	+	601	57238422	selB	CJE1570	-	selenocysteine-specific elongation factor
1525	 29.11	0	1474040..1474750	+	236	57238423	-	CJE1571	-	hypothetical protein
1526	 26.55	0	1474756..1475286	+	176	57238424	-	CJE1572	-	putative lipoprotein
1527	 35.98	+1	1475331..1475822	-	163	57238425	fldA	CJE1573	-	flavodoxin FldA
1528	 22.41	-1	1475822..1476517	-	231	57238426	-	CJE1574	-	hypothetical protein
1529	 28.89	0	1476520..1476834	-	104	57238427	-	CJE1575	-	hypothetical protein
1530	 32.98	0	1477005..1478429	+	474	57238428	katA	CJE1576	-	catalase
1531	 28.24	0	1478486..1478956	+	156	57238429	-	CJE1577	-	ankyrin repeat-containing protein
1532	 27.55	0	1478957..1479613	-	218	57238430	-	CJE1578	-	hypothetical protein
1533	 32.78	0	1479781..1480143	+	120	57238431	-	CJE1579	-	endoribonuclease L-PSP, putative
1534	 35.22	+1	1481600..1482763	+	387	57238432	metC	CJE1581	-	cystathionine beta-lyase
1535	 35.53	+1	1482773..1484140	+	455	57238433	purB-2	CJE1582	-	adenylosuccinate lyase
1536	 34.00	0	1484149..1485489	+	446	57238434	-	CJE1583	-	MmgE/PrpD family protein
1537	 28.00	0	1485571..1485795	+	74	57238435	-	CJE1584	-	feoA family protein
1538	 31.86	0	1487629..1489122	-	497	57238436	-	CJE1586	-	hydrogenase, (NiFe)/(NiFeSe) small subunit family
1539	 33.09	0	1489126..1489950	-	274	57238437	fabI	CJE1587	-	enoyl-(acyl carrier protein) reductase
1540	 30.80	0	1489954..1490625	-	223	57238438	tpiA	CJE1588	-	triosephosphate isomerase
1541	 35.08	+1	1490622..1491824	-	400	57238439	pgk	CJE1589	-	phosphoglycerate kinase
1542	 35.44	+1	1491827..1492825	-	332	57238440	gapA	CJE1590	-	glyceraldehyde 3-phosphate dehydrogenase A
1543	 28.94	0	1492885..1493430	+	181	57238441	nadD	CJE1591	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
1544	 30.28	0	1493458..1493784	+	108	57238442	-	CJE1592	-	hypothetical protein
1545	 26.72	0	1493815..1494192	-	125	57238443	-	CJE1593	-	hypothetical protein
1546	 31.87	0	1494240..1495610	-	456	57238444	algC	CJE1594	-	phosphomannomutase/phosphoglucomutase
1547	 31.84	0	1495732..1496268	+	178	57238445	fliL	CJE1595	-	flagellar basal body-associated protein FliL
1548	 33.05	0	1496268..1496615	+	115	57238446	acpS	CJE1596	-	4'-phosphopantetheinyl transferase
1549	 34.52	+1	1496616..1497035	-	139	57238447	-	CJE1597	-	hypothetical protein
1550	 35.24	+1	1497032..1498393	-	453	57238448	-	CJE1598	-	cytochrome P450 family protein
1551	 26.11	-1	1498390..1499511	-	373	57238449	-	CJE1599	-	hypothetical protein
1552	 28.35	0	1499584..1500768	-	394	57238450	kpsS	CJE1600	-	capsule polysaccharide export protein KpsS
1553	 28.56	0	1500765..1502837	-	690	57238451	kpsC	CJE1601	-	capsule polysaccharide export protein KpsC
1554	 24.53	-1	1502815..1504734	-	639	57238452	-	CJE1602	-	capsular polysaccharide biosynthesis protein, putative
1555	 25.65	-1	1504703..1506655	-	650	57238453	-	CJE1603	-	capsular polysaccharide biosynthesis protein, putative
1556	 26.11	-1	1506655..1508136	-	493	57238454	-	CJE1604	-	capsular polysaccharide biosynthesis protein, putative
1557	 26.03	-1	1508138..1508863	-	241	57238455	-	CJE1605	-	capsular polysaccharide biosynthesis protein, putative
1558	 25.12	-1	1508850..1510151	-	433	57238456	-	CJE1606	-	haloacid dehalogenase-like hydrolase
1559	 25.25	-1	1510144..1510737	-	197	57238457	-	CJE1607	-	hypothetical protein
1560	 26.14	-1	1510712..1511392	-	226	57238458	-	CJE1608	-	capsular biosynthesis nucleotidyltransferase, putative
1561	 32.34	0	1511380..1511985	-	201	57238459	gmhA-2	CJE1609	-	phosphoheptose isomerase
1562	 32.94	0	1511973..1512992	-	339	57238460	-	CJE1610	-	capsular biosynthesis sugar kinase, putative
1563	 34.01	0	1512989..1514020	-	343	57238461	wcbK	CJE1611	-	GDP-mannose 4,6-dehydratase
1564	 28.10	0	1514017..1515066	-	349	57238462	fcl	CJE1612	-	GDP-L-fucose synthetase
1565	 23.09	-1	1515078..1516688	-	536	57238463	-	CJE1613	-	capsular polysaccharide biosynthesis protein, putative
1566	 24.01	-1	1516685..1518121	-	478	57238464	-	CJE1614	-	hypothetical protein
1567	 27.53	0	1518157..1519500	-	447	57238465	-	CJE1615	-	capsular polysaccharide biosynthesis glycosyltransferase WcbB, putative
1568	 22.22	-2	1519503..1521104	-	533	57238466	-	CJE1616	-	capsular polysaccharide biosynthesis protein, putative
1569	 36.60	+1	1521101..1522048	-	315	57238467	kpsF	CJE1617	-	arabinose-5-phosphate isomerase
1570	 31.40	0	1522058..1523716	-	552	57238468	kpsD	CJE1618	-	capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein
1571	 29.58	0	1523718..1524836	-	372	57238469	kpsE	CJE1619	-	capsular polysaccharide ABC transporter
1572	 33.63	0	1524836..1525498	-	220	57238470	kpsT	CJE1620	-	capsular polysaccharide ABC transporter, ATP-binding protein
1573	 28.86	0	1525495..1526277	-	260	57238471	kpsM	CJE1621	-	capsular polysaccharide ABC transporter, permease protein
1574	 28.92	0	1526349..1526756	-	135	57238472	-	CJE1622	-	hypothetical protein
1575	 29.08	0	1526831..1527394	+	187	57238473	-	CJE1623	-	hypothetical protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.