IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1402	 29.65	0	1348210..1348671	-	153	57238305	-	CJE1445	-	hypothetical protein
1403	 18.52	-2	1348671..1348778	-	35	57238727	-	CJE1446	-	hypothetical protein
1404	 28.04	0	1348720..1350003	-	427	57238306	-	CJE1447	-	hypothetical protein
1405	 29.87	0	1350000..1350374	-	124	57238307	-	CJE1448	-	hypothetical protein
1406	 30.47	0	1350367..1350750	-	127	57238308	-	CJE1449	-	hypothetical protein
1407	 24.21	-1	1350747..1351382	-	211	57238309	-	CJE1450	-	hypothetical protein
1408	 31.34	0	1351395..1351745	-	116	57238310	-	CJE1451	-	hypothetical protein
1409	 31.16	0	1351846..1353411	-	521	57238311	-	CJE1452	-	hypothetical protein
1410	 28.12	0	1353404..1354036	-	210	57238312	-	CJE1453	-	hypothetical protein
1411	 27.36	0	1354033..1354350	-	105	57238313	-	CJE1454	-	phage head-tail adaptor, putative
1412	 28.89	0	1354363..1354677	-	104	57238314	-	CJE1455	-	hypothetical protein
1413	 29.30	0	1354760..1355032	+	90	57238315	-	CJE1456	-	hypothetical protein
1414	 28.97	0	1354797..1355048	-	83	57238316	-	CJE1457	-	hypothetical protein
1415	 32.48	0	1355059..1356225	-	388	57238317	-	CJE1458	-	HK97 family major capsid protein
1416	 31.72	0	1356242..1356799	-	185	57238318	-	CJE1459	-	hypothetical protein
1417	 26.90	0	1356885..1357754	-	289	57238319	-	CJE1460	-	hypothetical protein
1418	 30.75	0	1357767..1363466	-	1899	57238320	-	CJE1461	-	hypothetical protein
1419	 22.73	-1	1363478..1363609	-	43	57238321	-	CJE1462	-	hypothetical protein
1420	 27.11	0	1363592..1363864	+	90	57238322	-	CJE1463	-	hypothetical protein
1421	 27.31	0	1363856..1364071	-	71	57238323	-	CJE1464	-	hypothetical protein
1422	 28.29	0	1364152..1364508	-	118	57238324	-	CJE1465	-	hypothetical protein
1423	 31.70	0	1364505..1365485	-	326	57238325	-	CJE1466	-	hypothetical protein
1424	 23.93	-1	1365657..1366007	-	116	57238326	-	CJE1467	-	hypothetical protein
1425	 30.02	0	1366008..1366550	-	180	57238728	-	CJE1468	-	HK97 family phage protein
1426	 31.12	0	1366547..1367719	-	390	57238327	-	CJE1469	-	HK97 family portal protein
1427	 26.21	0	1367879..1368313	-	144	57238328	-	CJE1470	-	toxin-antitoxin protein, putative
1428	 30.50	0	1368368..1369993	-	541	57238329	-	CJE1471	-	phage terminase, large subunit, putative
1429	 26.42	0	1369997..1370632	-	211	57238330	-	CJE1472	-	phage terminase, small subunit, putative
1430	 29.06	0	1370883..1371233	-	116	57238331	-	CJE1473	-	HNH endonuclease domain-containing protein
1431	 23.02	-1	1371220..1371510	-	96	57238332	-	CJE1474	-	hypothetical protein
1432	 30.80	0	1372261..1373604	+	447	57238333	-	CJE1475	-	TrkH family potassium uptake protein
1433	 31.80	0	1373615..1374265	+	216	57238334	-	CJE1476	-	potassium uptake protein TrkA, putative
1434	 26.79	0	1374262..1374933	-	223	57238335	-	CJE1477	-	hypothetical protein
1435	 31.10	0	1374939..1375565	-	208	57238336	upp	CJE1478	-	uracil phosphoribosyltransferase
1436	 35.60	+1	1375562..1376797	-	411	57238337	-	CJE1479	-	NADP-dependent malic enzyme, truncation
1437	 33.48	0	1376799..1378190	-	463	57238338	gltX	CJE1480	-	glutamyl-tRNA synthetase
1438	 27.94	0	1378255..1379070	+	271	57238339	-	CJE1481	-	hypothetical protein
1439	 35.81	+1	1379107..1380438	-	443	57238340	accC-2	CJE1482	-	biotin carboxylase
1440	 36.40	+1	1380440..1380895	-	151	57238341	accB	CJE1483	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1441	 34.05	+1	1381043..1381603	+	186	57238342	dcd	CJE1484	-	deoxycytidine triphosphate deaminase
1442	 36.12	+1	1381652..1382656	+	334	57238343	flmA	CJE1485	-	polysaccharide biosynthesis protein
1443	 33.86	0	1382658..1383788	+	376	57238344	-	CJE1486	-	aminotransferase
1444	 35.46	+1	1383781..1385097	+	438	57238345	-	CJE1487	-	hypothetical protein
1445	 25.95	-1	1385094..1385879	+	261	57238346	-	CJE1488	-	hypothetical protein
1446	 25.23	-1	1385879..1386100	+	73	57238347	-	CJE1489	-	acyl carrier protein, putative
1447	 26.73	0	1386094..1387002	+	302	57238348	-	CJE1490	-	hypothetical protein
1448	 29.30	0	1387002..1388564	+	520	57238349	-	CJE1491	-	HAD family phosphatase
1449	 33.05	0	1388554..1389615	+	353	57238350	-	CJE1492	-	3-oxoacyl-(acyl carrier protein) synthase III
1450	 30.63	0	1389615..1389836	+	73	57238351	-	CJE1493	-	acyl carrier protein, putative
1451	 27.75	0	1389850..1390440	-	196	57238352	-	CJE1494	-	hypothetical protein
1452	 30.86	0	1390461..1390865	-	134	57238353	-	CJE1495	-	hypothetical protein
1453	 29.03	0	1391138..1392646	+	502	57238354	-	CJE1496	-	amino acid adenylation domain-containing protein
1454	 20.11	-2	1392639..1393364	+	241	57238355	-	CJE1497	-	acetyltransferase
1455	 26.53	0	1393364..1394083	+	239	57238356	-	CJE1498	-	formyl transferase domain-containing protein
1456	 26.22	0	1394085..1394309	+	74	57238357	-	CJE1499	-	acyl carrier protein, putative
1457	 24.48	-1	1394318..1395232	+	304	57238358	-	CJE1500	-	polysaccharide deacetylase family protein
1458	 25.63	-1	1395229..1396227	+	332	57238359	-	CJE1501	-	hypothetical protein
1459	 33.93	0	1396224..1396556	+	110	57238360	-	CJE1502	-	aminoglycoside N3-acetyltransferase domain-containing protein
1460	 26.42	0	1396855..1397013	+	52	57238361	-	CJE1503	-	hypothetical protein
1461	 27.89	0	1397010..1398221	-	403	57238362	-	CJE1504	-	hypothetical protein
1462	 31.33	0	1398312..1399010	+	232	57238363	neuA	CJE1506	-	acylneuraminate cytidylyltransferase
1463	 31.76	0	1398994..1399818	+	274	57238364	-	CJE1507	-	flagellar protein, putative
1464	 26.16	-1	1399815..1400288	+	157	57238365	-	CJE1508	-	acetyltransferase
1465	 31.73	0	1400253..1400999	-	248	57238366	hisF-1	CJE1509	-	imidazoleglycerol phosphate synthase, cyclase subunit
1466	 30.53	0	1401000..1401605	-	201	57238367	hisH	CJE1510	-	imidazole glycerol phosphate synthase subunit HisH
1467	 33.77	0	1401602..1402738	-	378	57238368	-	CJE1511	-	flagellin modification protein, PseA
1468	 33.53	0	1402996..1404027	+	343	57238369	neuB	CJE1512	-	N-acetylneuraminic acid synthetase
1469	 34.26	+1	1404024..1404995	+	323	57238370	-	CJE1513	-	NAD-dependent epimerase/dehydratase family protein
1470	 33.25	0	1404988..1406133	+	381	57238371	-	CJE1514	-	aminotransferase
1471	 26.08	-1	1406353..1406724	+	123	57238372	-	CJE1515	-	formyltransferase, putative
1472	 34.53	+1	1406883..1407887	+	334	57238373	ptmC	CJE1516	-	N-acetylneuraminic acid synthetase
1473	 28.88	0	1407868..1409034	+	388	57238374	neuC	CJE1517	-	UDP-N-acetylglucosamine 2-epimerase
1474	 31.09	0	1409043..1410068	+	341	57238375	-	CJE1518	-	nucleotidyltransferase family protein
1475	 29.25	0	1410065..1410970	+	301	57238376	-	CJE1519	-	hypothetical protein
1476	 34.32	+1	1410963..1411670	+	235	57238377	ptmB	CJE1520	-	posttranslational flagellin modification protein B
1477	 34.11	+1	1411670..1412440	+	256	57238378	ptmA	CJE1521	-	flagellin modification protein A
1478	 26.45	0	1412428..1414389	+	653	57238379	maf-1	CJE1522	-	motility accessory factor
1479	 27.91	0	1414365..1416245	+	626	57238380	maf-2	CJE1523	-	motility accessory factor
1480	 26.24	0	1416258..1418174	+	638	57238381	maf-3	CJE1524	-	motility accessory factor
1481	 27.94	0	1418150..1420057	+	635	57238382	maf-4	CJE1525	-	motility accessory factor
1482	 37.22	+1	1420088..1421809	-	573	57238729	flaB	CJE1526	-	flagellin
1483	 25.49	-1	1421811..1421912	-	33	57238715	-	CJE1527	-	hypothetical protein
1484	 37.40	+1	1421954..1423675	-	573	57238714	flaA	CJE1528	-	flagellin
1485	 28.66	0	1423772..1425589	-	605	57238383	maf-5	CJE1529	-	motility accessory factor
1486	 27.03	0	1425586..1427409	-	607	57238384	maf-6	CJE1530	-	motility accessory factor
1487	 30.68	0	1427419..1428660	-	413	57238385	-	CJE1531	-	hypothetical protein
1488	 29.07	0	1428660..1429175	-	171	57238386	ctsG	CJE1532	-	transformation system protein
1489	 31.55	0	1429176..1430183	-	335	57238387	gcp	CJE1533	-	O-sialoglycoprotein endopeptidase
1490	 32.62	0	1430180..1431574	-	464	57238388	-	CJE1534	-	hypothetical protein
1491	 31.28	0	1431576..1432646	-	356	57238389	dxr	CJE1535	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1492	 34.30	+1	1432643..1433368	-	241	57238390	cdsA	CJE1536	-	phosphatidate cytidylyltransferase
1493	 32.74	0	1433377..1433715	-	112	57238391	-	CJE1537	-	hypothetical protein
1494	 26.83	0	1433717..1435024	-	435	57238392	-	CJE1538	-	fibronectin/fibrinogen binding protein, putative
1495	 26.56	0	1435086..1435661	+	191	57238393	-	CJE1539	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
1496	 28.28	0	1435658..1436647	+	329	57238394	pldA	CJE1540	-	phospholipase A
1497	 31.06	0	1436733..1437701	+	322	57238395	ceuB	CJE1541	-	enterochelin ABC transporter, permease protein
1498	 28.75	0	1437694..1438632	+	312	57238396	ceuC	CJE1542	-	enterochelin ABC transporter, permease protein
1499	 28.57	0	1438629..1439384	+	251	57238397	ceuD	CJE1543	-	enterochelin ABC transporter, ATP-binding protein
1500	 29.73	0	1440614..1441168	-	184	57238398	-	CJE1545	-	hypothetical protein
1501	 34.15	+1	1441303..1443135	-	610	57238399	nrfA	CJE1546	-	cytochrome c552
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.