IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1341	 23.64	-1	1296612..1297106	-	164	57238120	-	CJE1383	-	hypothetical protein
1342	 31.82	0	1297110..1297241	+	43	57238121	-	CJE1384	-	hypothetical protein
1343	 35.29	+1	1297245..1298780	+	511	57238122	guaA	CJE1385	-	bifunctional GMP synthase/glutamine amidotransferase protein
1344	 29.50	0	1298866..1300326	+	486	57238123	-	CJE1386	-	hypothetical protein
1345	 34.29	+1	1300566..1301816	+	416	57238124	purD	CJE1387	-	phosphoribosylamine--glycine ligase
1346	 33.11	0	1301813..1302265	+	150	57238125	-	CJE1388	-	hypothetical protein
1347	 31.53	0	1302255..1304303	+	682	57238126	-	CJE1389	-	organic solvent tolerance protein, putative
1348	 36.20	+1	1304373..1306532	+	719	57238127	pnp	CJE1390	-	polynucleotide phosphorylase/polyadenylase
1349	 30.64	0	1306529..1307011	+	160	57238128	-	CJE1391	-	hypothetical protein
1350	 30.47	0	1307062..1307724	-	220	57238129	-	CJE1392	-	hypothetical protein
1351	 30.92	0	1308976..1309431	+	151	57238130	-	CJE1394	-	low molecular weight phosphotyrosine protein phosphatase family protein
1352	 35.26	+1	1309683..1310978	+	431	57238131	porA	CJE1395	-	major outer membrane protein
1353	 33.51	0	1311094..1312215	-	373	57238132	dnaJ-2	CJE1396	-	co-chaperone protein DnaJ
1354	 32.44	0	1312372..1313043	+	223	57238133	racR	CJE1397	-	DNA-binding response regulator
1355	 29.13	0	1313040..1314275	+	411	57238134	racS	CJE1398	-	sensor histidine kinase
1356	 30.54	0	1314275..1314847	+	190	57238135	recR	CJE1399	-	recombination protein RecR
1357	 35.01	+1	1314844..1315380	-	178	57238136	hydD	CJE1400	-	hydrogenase maturation protease HydD
1358	 33.19	0	1315377..1316093	-	238	57238137	hydC	CJE1401	-	quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit
1359	 35.31	+1	1316080..1317795	-	571	57238138	hydB	CJE1402	-	quinone-reactive Ni/Fe-hydrogenase, large subunit
1360	 38.60	+2	1317798..1318880	-	360	57238139	hydA	CJE1403	-	quinone-reactive Ni/Fe-hydrogenase, small subunit
1361	 27.80	0	1319058..1320899	-	613	57238140	mnmC	CJE1404	-	5-methylaminomethyl-2-thiouridine methyltransferase
1362	 29.14	0	1320896..1322875	-	659	57238141	-	CJE1405	-	N-acetylmuramoyl-L-alanine amidase
1363	 37.45	+1	1322875..1323966	-	363	57238142	-	CJE1406	-	2-nitropropane dioxygenase family oxidoreductase
1364	 32.42	0	1323963..1325168	-	401	57238143	tyrS	CJE1407	-	tyrosyl-tRNA synthetase
1365	 30.74	0	1325180..1327375	-	731	57238144	-	CJE1408	-	RelA/SpoT family protein
1366	 33.33	0	1327359..1327583	-	74	57238145	rpoZ	CJE1409	-	DNA-directed RNA polymerase subunit omega
1367	 33.47	0	1327594..1328313	-	239	57238146	pyrH	CJE1410	-	uridylate kinase
1368	 27.72	0	1328365..1329558	-	397	57238147	-	CJE1411	-	M24/M37 family peptidase
1369	 25.15	-1	1329555..1330361	-	268	57238148	-	CJE1412	-	cell division protein FtsX, putative
1370	 30.93	0	1330348..1331013	-	221	57238149	lolD	CJE1413	-	lipoprotein releasing system ATP-binding protein LolD
1371	 27.82	0	1331083..1332261	-	392	57238150	trmB	CJE1414	-	tRNA (guanine-N(7))-methyltransferase
1372	 33.90	0	1332261..1333493	-	410	57238151	-	CJE1415	-	fibronectin type III domain-containing protein
1373	 29.31	0	1333441..1334409	-	322	57238152	-	CJE1416	-	ribosomal large subunit pseudouridine synthase D
1374	 28.25	0	1334487..1335587	+	366	57238153	-	CJE1417	-	rod shape-determining protein RodA, putative
1375	 29.08	0	1335926..1337101	+	391	57238154	-	CJE1418	-	phage integrase family site specific recombinase
1376	 28.99	0	1337098..1337304	-	68	57238155	-	CJE1419	-	DNA binding protein, putative
1377	 28.53	0	1337306..1337659	-	117	57238156	-	CJE1420	-	hypothetical protein
1378	 29.76	0	1337677..1338432	-	251	57238157	-	CJE1421	-	site-specific DNA-methyltransferase
1379	 27.72	0	1338410..1338676	-	88	57238158	-	CJE1422	-	emm-like protein
1380	 23.66	-1	1338660..1339031	-	123	57238159	-	CJE1423	-	hypothetical protein
1381	 28.89	0	1339032..1339256	-	74	57238160	-	CJE1424	-	hypothetical protein
1382	 29.49	0	1339265..1339759	-	164	57238161	-	CJE1425	-	hypothetical protein
1383	 31.43	0	1339963..1340277	-	104	57238162	-	CJE1426	-	hypothetical protein
1384	 26.48	0	1340356..1340676	-	106	57238163	-	CJE1427	-	hypothetical protein
1385	 25.71	-1	1340669..1340773	-	34	57238164	-	CJE1428	-	hypothetical protein
1386	 29.11	0	1341064..1341300	-	78	57238165	-	CJE1429	-	hypothetical protein
1387	 23.96	-1	1341314..1342081	-	255	57238166	-	CJE1430	-	RloG protein, putative
1388	 29.33	0	1342098..1342247	-	49	57238167	-	CJE1431	-	hypothetical protein
1389	 24.03	-1	1342219..1342347	-	42	57238168	-	CJE1432	-	hypothetical protein
1390	 22.35	-1	1342415..1342678	-	87	57238169	-	CJE1433	-	hypothetical protein
1391	 29.17	0	1342735..1343022	-	95	57238170	-	CJE1434	-	hypothetical protein
1392	 30.60	0	1343075..1343806	-	243	57238171	-	CJE1435	-	DNA-binding protein Roi
1393	 31.58	0	1344237..1344521	-	94	57238172	-	CJE1436	-	hypothetical protein
1394	 28.63	0	1344501..1344734	+	77	57238174	-	CJE1437	-	hypothetical protein
1395	 27.94	0	1344518..1344721	-	67	57238173	-	CJE1438	-	hypothetical protein
1396	 26.76	0	1344926..1345579	+	217	57238175	-	CJE1439	-	hypothetical protein
1397	 26.55	0	1345814..1346476	+	220	57238176	-	CJE1440	-	signal peptidase I, putative
1398	 29.36	0	1346482..1347135	+	217	57238723	-	CJE1441	-	DNA/RNA non-specific endonuclease
1399	 31.56	0	1347152..1347433	+	93	57238724	-	CJE1442	-	hypothetical protein
1400	 28.28	0	1347447..1347644	-	65	57238725	-	CJE1443	-	hypothetical protein
1401	 26.90	0	1347562..1347981	-	139	57238726	-	CJE1444	-	hypothetical protein
1402	 29.65	0	1348210..1348671	-	153	57238305	-	CJE1445	-	hypothetical protein
1403	 18.52	-2	1348671..1348778	-	35	57238727	-	CJE1446	-	hypothetical protein
1404	 28.04	0	1348720..1350003	-	427	57238306	-	CJE1447	-	hypothetical protein
1405	 29.87	0	1350000..1350374	-	124	57238307	-	CJE1448	-	hypothetical protein
1406	 30.47	0	1350367..1350750	-	127	57238308	-	CJE1449	-	hypothetical protein
1407	 24.21	-1	1350747..1351382	-	211	57238309	-	CJE1450	-	hypothetical protein
1408	 31.34	0	1351395..1351745	-	116	57238310	-	CJE1451	-	hypothetical protein
1409	 31.16	0	1351846..1353411	-	521	57238311	-	CJE1452	-	hypothetical protein
1410	 28.12	0	1353404..1354036	-	210	57238312	-	CJE1453	-	hypothetical protein
1411	 27.36	0	1354033..1354350	-	105	57238313	-	CJE1454	-	phage head-tail adaptor, putative
1412	 28.89	0	1354363..1354677	-	104	57238314	-	CJE1455	-	hypothetical protein
1413	 29.30	0	1354760..1355032	+	90	57238315	-	CJE1456	-	hypothetical protein
1414	 28.97	0	1354797..1355048	-	83	57238316	-	CJE1457	-	hypothetical protein
1415	 32.48	0	1355059..1356225	-	388	57238317	-	CJE1458	-	HK97 family major capsid protein
1416	 31.72	0	1356242..1356799	-	185	57238318	-	CJE1459	-	hypothetical protein
1417	 26.90	0	1356885..1357754	-	289	57238319	-	CJE1460	-	hypothetical protein
1418	 30.75	0	1357767..1363466	-	1899	57238320	-	CJE1461	-	hypothetical protein
1419	 22.73	-1	1363478..1363609	-	43	57238321	-	CJE1462	-	hypothetical protein
1420	 27.11	0	1363592..1363864	+	90	57238322	-	CJE1463	-	hypothetical protein
1421	 27.31	0	1363856..1364071	-	71	57238323	-	CJE1464	-	hypothetical protein
1422	 28.29	0	1364152..1364508	-	118	57238324	-	CJE1465	-	hypothetical protein
1423	 31.70	0	1364505..1365485	-	326	57238325	-	CJE1466	-	hypothetical protein
1424	 23.93	-1	1365657..1366007	-	116	57238326	-	CJE1467	-	hypothetical protein
1425	 30.02	0	1366008..1366550	-	180	57238728	-	CJE1468	-	HK97 family phage protein
1426	 31.12	0	1366547..1367719	-	390	57238327	-	CJE1469	-	HK97 family portal protein
1427	 26.21	0	1367879..1368313	-	144	57238328	-	CJE1470	-	toxin-antitoxin protein, putative
1428	 30.50	0	1368368..1369993	-	541	57238329	-	CJE1471	-	phage terminase, large subunit, putative
1429	 26.42	0	1369997..1370632	-	211	57238330	-	CJE1472	-	phage terminase, small subunit, putative
1430	 29.06	0	1370883..1371233	-	116	57238331	-	CJE1473	-	HNH endonuclease domain-containing protein
1431	 23.02	-1	1371220..1371510	-	96	57238332	-	CJE1474	-	hypothetical protein
1432	 30.80	0	1372261..1373604	+	447	57238333	-	CJE1475	-	TrkH family potassium uptake protein
1433	 31.80	0	1373615..1374265	+	216	57238334	-	CJE1476	-	potassium uptake protein TrkA, putative
1434	 26.79	0	1374262..1374933	-	223	57238335	-	CJE1477	-	hypothetical protein
1435	 31.10	0	1374939..1375565	-	208	57238336	upp	CJE1478	-	uracil phosphoribosyltransferase
1436	 35.60	+1	1375562..1376797	-	411	57238337	-	CJE1479	-	NADP-dependent malic enzyme, truncation
1437	 33.48	0	1376799..1378190	-	463	57238338	gltX	CJE1480	-	glutamyl-tRNA synthetase
1438	 27.94	0	1378255..1379070	+	271	57238339	-	CJE1481	-	hypothetical protein
1439	 35.81	+1	1379107..1380438	-	443	57238340	accC-2	CJE1482	-	biotin carboxylase
1440	 36.40	+1	1380440..1380895	-	151	57238341	accB	CJE1483	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.