IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1299	 28.32	0	1257093..1257650	-	185	57238079	-	CJE1341	-	putative lipoprotein
1300	 24.72	-1	1257733..1258359	+	208	57238080	-	CJE1342	-	hypothetical protein
1301	 33.98	0	1258280..1259833	+	517	57238081	-	CJE1343	-	phosphodiesterase
1302	 27.96	0	1259842..1260399	+	185	57238082	-	CJE1344	-	DedA family protein
1303	 23.57	-1	1260399..1261658	+	419	57238722	-	CJE1345	-	ComEC/Rec2 family protein
1304	 26.77	0	1261602..1262408	-	268	57238083	rbn	CJE1346	-	ribonuclease BN
1305	 33.77	0	1262412..1263794	-	460	57238084	glcD	CJE1347	-	glycolate oxidase, subunit GlcD
1306	 31.79	0	1263797..1264507	-	236	57238085	-	CJE1348	-	hypothetical protein
1307	 17.65	-2	1264515..1264616	-	33	57238086	-	CJE1349	-	hypothetical protein
1308	 32.13	0	1264644..1265804	+	386	57238087	-	CJE1350	-	M24/M37 family peptidase
1309	 28.43	0	1265801..1266004	-	67	57238088	-	CJE1351	-	hypothetical protein
1310	 27.02	0	1266006..1266686	-	226	57238089	-	CJE1352	-	hypothetical protein
1311	 31.54	0	1266650..1267261	-	203	57238090	ribE	CJE1353	-	riboflavin synthase subunit alpha
1312	 28.45	0	1267270..1269810	-	846	57238091	-	CJE1354	-	hypothetical protein
1313	 29.50	0	1269972..1270232	+	86	57238092	groES	CJE1355	-	co-chaperonin GroES
1314	 36.75	+1	1270253..1271890	+	545	57238093	groEL	CJE1356	-	chaperonin GroEL
1315	 27.04	0	1271933..1273123	-	396	57238094	-	CJE1357	-	sensor histidine kinase
1316	 30.18	0	1273116..1273781	-	221	57238095	-	CJE1358	-	DNA-binding response regulator
1317	 29.00	0	1273929..1274528	+	199	57238096	-	CJE1359	-	hemerythrin family non-heme iron protein
1318	 28.11	0	1274539..1274787	+	82	57238097	-	CJE1360	-	hypothetical protein
1319	 27.32	0	1275045..1276292	-	415	57238098	-	CJE1361	-	sensor histidine kinase
1320	 31.26	0	1276289..1276963	-	224	57238099	-	CJE1362	-	DNA-binding response regulator
1321	 31.29	0	1277039..1278457	-	472	57238100	htrA	CJE1363	-	protease DO
1322	 32.10	0	1278658..1279551	+	297	57238101	dnaJ-1	CJE1364	-	co-chaperone protein DnaJ
1323	 31.20	0	1279567..1279941	+	124	57238102	-	CJE1365	-	MerR family transcriptional regulator
1324	 30.87	0	1279948..1281573	+	541	57238103	-	CJE1366	-	sodium/hydrogen exchanger family protein
1325	 26.13	-1	1281583..1281915	+	110	57238104	-	CJE1367	-	hypothetical protein
1326	 30.92	0	1281912..1282532	+	206	57238105	-	CJE1368	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
1327	 30.23	0	1282588..1284582	+	664	57238106	glyS	CJE1369	-	glycyl-tRNA synthetase subunit beta
1328	 30.66	0	1284579..1285400	+	273	57238107	-	CJE1370	-	M24/M37 family peptidase
1329	 26.71	0	1285397..1286347	+	316	57238108	-	CJE1371	-	hypothetical protein
1330	 29.13	0	1286344..1287318	-	324	57238109	-	CJE1372	-	Ppx/GppA family phosphatase
1331	 32.30	0	1287374..1288147	+	257	57238110	pdxJ	CJE1373	-	pyridoxal phosphate biosynthetic protein PdxJ
1332	 31.78	0	1288144..1289238	+	364	57238111	pdxA	CJE1374	-	4-hydroxythreonine-4-phosphate dehydrogenase
1333	 25.64	-1	1289228..1289539	-	103	57238112	-	CJE1375	-	hypothetical protein
1334	 25.47	-1	1289512..1289829	-	105	57238113	-	CJE1376	-	hypothetical protein
1335	 32.75	0	1289942..1291141	+	399	57238114	-	CJE1377	-	transporter, putative
1336	 30.53	0	1291197..1291517	+	106	57238115	-	CJE1378	-	hypothetical protein
1337	 31.87	0	1291701..1292723	+	340	57238116	hemE	CJE1379	-	uroporphyrinogen decarboxylase
1338	 30.79	0	1292720..1293622	+	300	57238117	-	CJE1380	-	radical SAM domain-containing protein
1339	 25.06	-1	1293619..1294815	-	398	57238118	-	CJE1381	-	hypothetical protein
1340	 29.67	0	1294817..1296619	-	600	57238119	uvrC	CJE1382	-	excinuclease ABC subunit C
1341	 23.64	-1	1296612..1297106	-	164	57238120	-	CJE1383	-	hypothetical protein
1342	 31.82	0	1297110..1297241	+	43	57238121	-	CJE1384	-	hypothetical protein
1343	 35.29	+1	1297245..1298780	+	511	57238122	guaA	CJE1385	-	bifunctional GMP synthase/glutamine amidotransferase protein
1344	 29.50	0	1298866..1300326	+	486	57238123	-	CJE1386	-	hypothetical protein
1345	 34.29	+1	1300566..1301816	+	416	57238124	purD	CJE1387	-	phosphoribosylamine--glycine ligase
1346	 33.11	0	1301813..1302265	+	150	57238125	-	CJE1388	-	hypothetical protein
1347	 31.53	0	1302255..1304303	+	682	57238126	-	CJE1389	-	organic solvent tolerance protein, putative
1348	 36.20	+1	1304373..1306532	+	719	57238127	pnp	CJE1390	-	polynucleotide phosphorylase/polyadenylase
1349	 30.64	0	1306529..1307011	+	160	57238128	-	CJE1391	-	hypothetical protein
1350	 30.47	0	1307062..1307724	-	220	57238129	-	CJE1392	-	hypothetical protein
1351	 30.92	0	1308976..1309431	+	151	57238130	-	CJE1394	-	low molecular weight phosphotyrosine protein phosphatase family protein
1352	 35.26	+1	1309683..1310978	+	431	57238131	porA	CJE1395	-	major outer membrane protein
1353	 33.51	0	1311094..1312215	-	373	57238132	dnaJ-2	CJE1396	-	co-chaperone protein DnaJ
1354	 32.44	0	1312372..1313043	+	223	57238133	racR	CJE1397	-	DNA-binding response regulator
1355	 29.13	0	1313040..1314275	+	411	57238134	racS	CJE1398	-	sensor histidine kinase
1356	 30.54	0	1314275..1314847	+	190	57238135	recR	CJE1399	-	recombination protein RecR
1357	 35.01	+1	1314844..1315380	-	178	57238136	hydD	CJE1400	-	hydrogenase maturation protease HydD
1358	 33.19	0	1315377..1316093	-	238	57238137	hydC	CJE1401	-	quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit
1359	 35.31	+1	1316080..1317795	-	571	57238138	hydB	CJE1402	-	quinone-reactive Ni/Fe-hydrogenase, large subunit
1360	 38.60	+2	1317798..1318880	-	360	57238139	hydA	CJE1403	-	quinone-reactive Ni/Fe-hydrogenase, small subunit
1361	 27.80	0	1319058..1320899	-	613	57238140	mnmC	CJE1404	-	5-methylaminomethyl-2-thiouridine methyltransferase
1362	 29.14	0	1320896..1322875	-	659	57238141	-	CJE1405	-	N-acetylmuramoyl-L-alanine amidase
1363	 37.45	+1	1322875..1323966	-	363	57238142	-	CJE1406	-	2-nitropropane dioxygenase family oxidoreductase
1364	 32.42	0	1323963..1325168	-	401	57238143	tyrS	CJE1407	-	tyrosyl-tRNA synthetase
1365	 30.74	0	1325180..1327375	-	731	57238144	-	CJE1408	-	RelA/SpoT family protein
1366	 33.33	0	1327359..1327583	-	74	57238145	rpoZ	CJE1409	-	DNA-directed RNA polymerase subunit omega
1367	 33.47	0	1327594..1328313	-	239	57238146	pyrH	CJE1410	-	uridylate kinase
1368	 27.72	0	1328365..1329558	-	397	57238147	-	CJE1411	-	M24/M37 family peptidase
1369	 25.15	-1	1329555..1330361	-	268	57238148	-	CJE1412	-	cell division protein FtsX, putative
1370	 30.93	0	1330348..1331013	-	221	57238149	lolD	CJE1413	-	lipoprotein releasing system ATP-binding protein LolD
1371	 27.82	0	1331083..1332261	-	392	57238150	trmB	CJE1414	-	tRNA (guanine-N(7))-methyltransferase
1372	 33.90	0	1332261..1333493	-	410	57238151	-	CJE1415	-	fibronectin type III domain-containing protein
1373	 29.31	0	1333441..1334409	-	322	57238152	-	CJE1416	-	ribosomal large subunit pseudouridine synthase D
1374	 28.25	0	1334487..1335587	+	366	57238153	-	CJE1417	-	rod shape-determining protein RodA, putative
1375	 29.08	0	1335926..1337101	+	391	57238154	-	CJE1418	-	phage integrase family site specific recombinase
1376	 28.99	0	1337098..1337304	-	68	57238155	-	CJE1419	-	DNA binding protein, putative
1377	 28.53	0	1337306..1337659	-	117	57238156	-	CJE1420	-	hypothetical protein
1378	 29.76	0	1337677..1338432	-	251	57238157	-	CJE1421	-	site-specific DNA-methyltransferase
1379	 27.72	0	1338410..1338676	-	88	57238158	-	CJE1422	-	emm-like protein
1380	 23.66	-1	1338660..1339031	-	123	57238159	-	CJE1423	-	hypothetical protein
1381	 28.89	0	1339032..1339256	-	74	57238160	-	CJE1424	-	hypothetical protein
1382	 29.49	0	1339265..1339759	-	164	57238161	-	CJE1425	-	hypothetical protein
1383	 31.43	0	1339963..1340277	-	104	57238162	-	CJE1426	-	hypothetical protein
1384	 26.48	0	1340356..1340676	-	106	57238163	-	CJE1427	-	hypothetical protein
1385	 25.71	-1	1340669..1340773	-	34	57238164	-	CJE1428	-	hypothetical protein
1386	 29.11	0	1341064..1341300	-	78	57238165	-	CJE1429	-	hypothetical protein
1387	 23.96	-1	1341314..1342081	-	255	57238166	-	CJE1430	-	RloG protein, putative
1388	 29.33	0	1342098..1342247	-	49	57238167	-	CJE1431	-	hypothetical protein
1389	 24.03	-1	1342219..1342347	-	42	57238168	-	CJE1432	-	hypothetical protein
1390	 22.35	-1	1342415..1342678	-	87	57238169	-	CJE1433	-	hypothetical protein
1391	 29.17	0	1342735..1343022	-	95	57238170	-	CJE1434	-	hypothetical protein
1392	 30.60	0	1343075..1343806	-	243	57238171	-	CJE1435	-	DNA-binding protein Roi
1393	 31.58	0	1344237..1344521	-	94	57238172	-	CJE1436	-	hypothetical protein
1394	 28.63	0	1344501..1344734	+	77	57238174	-	CJE1437	-	hypothetical protein
1395	 27.94	0	1344518..1344721	-	67	57238173	-	CJE1438	-	hypothetical protein
1396	 26.76	0	1344926..1345579	+	217	57238175	-	CJE1439	-	hypothetical protein
1397	 26.55	0	1345814..1346476	+	220	57238176	-	CJE1440	-	signal peptidase I, putative
1398	 29.36	0	1346482..1347135	+	217	57238723	-	CJE1441	-	DNA/RNA non-specific endonuclease
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.