IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1257	 32.12	0	1216189..1216683	-	164	57238037	-	CJE1299	-	hypothetical protein
1258	 30.50	0	1216680..1217456	-	258	57238038	-	CJE1300	-	hypothetical protein
1259	 30.31	0	1217523..1218449	+	308	57238039	ldh	CJE1301	-	L-lactate dehydrogenase
1260	 29.73	0	1218412..1219050	-	212	57238040	-	CJE1302	-	DedA family protein
1261	 37.72	+1	1219131..1219358	-	75	57238041	-	CJE1303	-	hypothetical protein
1262	 35.71	+1	1219369..1220799	-	476	57238042	-	CJE1304	-	hypothetical protein
1263	 35.61	+1	1220963..1221445	-	160	57238043	ppiB	CJE1305	-	peptidyl-prolyl cis-trans isomerase B
1264	 35.88	+1	1221455..1222162	-	235	57238044	-	CJE1306	-	hypothetical protein
1265	 27.49	0	1222267..1222608	+	113	57238045	-	CJE1307	-	SMR family multidrug efflux pump
1266	 28.16	0	1222608..1222916	+	102	57238046	-	CJE1308	-	SMR family multidrug efflux pump
1267	 31.51	0	1222934..1224526	-	530	57238047	argS	CJE1309	-	arginyl-tRNA synthetase
1268	 29.17	0	1224538..1224777	-	79	57238048	-	CJE1310	-	twin arginine-targeting protein translocase
1269	 29.77	0	1224779..1225396	-	205	57238049	gmk	CJE1311	-	guanylate kinase
1270	 30.11	0	1225399..1227042	-	547	57238050	-	CJE1312	-	hypothetical protein
1271	 27.73	0	1227099..1227866	-	255	57238051	fliR	CJE1313	-	flagellar biosynthesis protein FliR
1272	 30.50	0	1227853..1228488	-	211	57238052	-	CJE1314	-	ABC transporter, ATP-binding protein
1273	 34.17	+1	1228501..1229574	-	357	57238053	tsf	CJE1315	-	elongation factor Ts
1274	 33.96	0	1229574..1230365	-	263	57238054	rpsB	CJE1316	-	30S ribosomal protein S2
1275	 28.95	0	1230481..1231644	-	387	57238055	-	CJE1317	-	cyclopropane-fatty-acyl-phospholipid synthase, putative
1276	 32.80	0	1231772..1232896	-	374	57238056	petC	CJE1318	-	ubiquinol--cytochrome c reductase, cytochrome c1 subunit
1277	 33.73	0	1232893..1234143	-	416	57238057	petB	CJE1319	-	ubiquinol--cytochrome c reductase, cytochrome b subunit
1278	 39.68	+2	1234145..1234648	-	167	57238058	petA	CJE1320	-	ubiquinol--cytochrome c reductase, iron-sulfur subunit
1279	 26.96	0	1234739..1236025	-	428	57238059	arsB	CJE1321	-	arsenical pump membrane protein
1280	 33.39	0	1236026..1237885	-	619	57238060	gidA	CJE1322	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1281	 28.31	0	1237973..1238470	-	165	57238061	-	CJE1323	-	methyl-accepting chemotaxis protein
1282	 30.43	0	1238488..1239867	-	459	57238062	-	CJE1324	-	methyl-accepting chemotaxis protein
1283	 27.27	0	1239984..1240478	-	164	57238063	-	CJE1325	-	methyl-accepting chemotaxis protein
1284	 33.49	0	1240825..1242123	+	432	57238064	dctA	CJE1326	-	C4-dicarboxylate transport protein
1285	 27.39	0	1242120..1242926	-	268	57238065	-	CJE1327	-	hypothetical protein
1286	 32.68	0	1243068..1244594	+	508	57238066	-	CJE1328	-	phosphate transporter family protein
1287	 29.18	0	1244602..1245780	-	392	57238067	-	CJE1329	-	dihydroorotase
1288	 32.55	0	1245790..1246683	-	297	57238068	gpsA	CJE1330	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1289	 33.33	0	1246683..1248101	-	472	57238069	gatB	CJE1331	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1290	 33.94	0	1248216..1248710	+	164	57238070	luxS	CJE1332	-	S-ribosylhomocysteinase
1291	 31.42	0	1249021..1250013	+	330	57238071	-	CJE1333	-	2OG-Fe(II) oxygenase family oxidoreductase
1292	 32.07	0	1250006..1250794	+	262	57238072	-	CJE1334	-	NLPA family lipoprotein
1293	 32.19	0	1250806..1253070	+	754	57238073	metE	CJE1335	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1294	 30.39	0	1253080..1253928	+	282	57238074	metF	CJE1336	-	5,10-methylenetetrahydrofolate reductase
1295	 23.96	-1	1253950..1254141	-	63	57238075	-	CJE1337	-	hypothetical protein
1296	 33.48	0	1254138..1254818	-	226	57238076	atpB	CJE1338	-	F0F1 ATP synthase subunit A
1297	 35.65	+1	1254887..1256227	-	446	57238077	radA	CJE1339	-	DNA repair protein RadA
1298	 32.41	0	1256227..1257093	-	288	57238078	ftsY	CJE1340	-	signal recognition particle-docking protein FtsY
1299	 28.32	0	1257093..1257650	-	185	57238079	-	CJE1341	-	putative lipoprotein
1300	 24.72	-1	1257733..1258359	+	208	57238080	-	CJE1342	-	hypothetical protein
1301	 33.98	0	1258280..1259833	+	517	57238081	-	CJE1343	-	phosphodiesterase
1302	 27.96	0	1259842..1260399	+	185	57238082	-	CJE1344	-	DedA family protein
1303	 23.57	-1	1260399..1261658	+	419	57238722	-	CJE1345	-	ComEC/Rec2 family protein
1304	 26.77	0	1261602..1262408	-	268	57238083	rbn	CJE1346	-	ribonuclease BN
1305	 33.77	0	1262412..1263794	-	460	57238084	glcD	CJE1347	-	glycolate oxidase, subunit GlcD
1306	 31.79	0	1263797..1264507	-	236	57238085	-	CJE1348	-	hypothetical protein
1307	 17.65	-2	1264515..1264616	-	33	57238086	-	CJE1349	-	hypothetical protein
1308	 32.13	0	1264644..1265804	+	386	57238087	-	CJE1350	-	M24/M37 family peptidase
1309	 28.43	0	1265801..1266004	-	67	57238088	-	CJE1351	-	hypothetical protein
1310	 27.02	0	1266006..1266686	-	226	57238089	-	CJE1352	-	hypothetical protein
1311	 31.54	0	1266650..1267261	-	203	57238090	ribE	CJE1353	-	riboflavin synthase subunit alpha
1312	 28.45	0	1267270..1269810	-	846	57238091	-	CJE1354	-	hypothetical protein
1313	 29.50	0	1269972..1270232	+	86	57238092	groES	CJE1355	-	co-chaperonin GroES
1314	 36.75	+1	1270253..1271890	+	545	57238093	groEL	CJE1356	-	chaperonin GroEL
1315	 27.04	0	1271933..1273123	-	396	57238094	-	CJE1357	-	sensor histidine kinase
1316	 30.18	0	1273116..1273781	-	221	57238095	-	CJE1358	-	DNA-binding response regulator
1317	 29.00	0	1273929..1274528	+	199	57238096	-	CJE1359	-	hemerythrin family non-heme iron protein
1318	 28.11	0	1274539..1274787	+	82	57238097	-	CJE1360	-	hypothetical protein
1319	 27.32	0	1275045..1276292	-	415	57238098	-	CJE1361	-	sensor histidine kinase
1320	 31.26	0	1276289..1276963	-	224	57238099	-	CJE1362	-	DNA-binding response regulator
1321	 31.29	0	1277039..1278457	-	472	57238100	htrA	CJE1363	-	protease DO
1322	 32.10	0	1278658..1279551	+	297	57238101	dnaJ-1	CJE1364	-	co-chaperone protein DnaJ
1323	 31.20	0	1279567..1279941	+	124	57238102	-	CJE1365	-	MerR family transcriptional regulator
1324	 30.87	0	1279948..1281573	+	541	57238103	-	CJE1366	-	sodium/hydrogen exchanger family protein
1325	 26.13	-1	1281583..1281915	+	110	57238104	-	CJE1367	-	hypothetical protein
1326	 30.92	0	1281912..1282532	+	206	57238105	-	CJE1368	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
1327	 30.23	0	1282588..1284582	+	664	57238106	glyS	CJE1369	-	glycyl-tRNA synthetase subunit beta
1328	 30.66	0	1284579..1285400	+	273	57238107	-	CJE1370	-	M24/M37 family peptidase
1329	 26.71	0	1285397..1286347	+	316	57238108	-	CJE1371	-	hypothetical protein
1330	 29.13	0	1286344..1287318	-	324	57238109	-	CJE1372	-	Ppx/GppA family phosphatase
1331	 32.30	0	1287374..1288147	+	257	57238110	pdxJ	CJE1373	-	pyridoxal phosphate biosynthetic protein PdxJ
1332	 31.78	0	1288144..1289238	+	364	57238111	pdxA	CJE1374	-	4-hydroxythreonine-4-phosphate dehydrogenase
1333	 25.64	-1	1289228..1289539	-	103	57238112	-	CJE1375	-	hypothetical protein
1334	 25.47	-1	1289512..1289829	-	105	57238113	-	CJE1376	-	hypothetical protein
1335	 32.75	0	1289942..1291141	+	399	57238114	-	CJE1377	-	transporter, putative
1336	 30.53	0	1291197..1291517	+	106	57238115	-	CJE1378	-	hypothetical protein
1337	 31.87	0	1291701..1292723	+	340	57238116	hemE	CJE1379	-	uroporphyrinogen decarboxylase
1338	 30.79	0	1292720..1293622	+	300	57238117	-	CJE1380	-	radical SAM domain-containing protein
1339	 25.06	-1	1293619..1294815	-	398	57238118	-	CJE1381	-	hypothetical protein
1340	 29.67	0	1294817..1296619	-	600	57238119	uvrC	CJE1382	-	excinuclease ABC subunit C
1341	 23.64	-1	1296612..1297106	-	164	57238120	-	CJE1383	-	hypothetical protein
1342	 31.82	0	1297110..1297241	+	43	57238121	-	CJE1384	-	hypothetical protein
1343	 35.29	+1	1297245..1298780	+	511	57238122	guaA	CJE1385	-	bifunctional GMP synthase/glutamine amidotransferase protein
1344	 29.50	0	1298866..1300326	+	486	57238123	-	CJE1386	-	hypothetical protein
1345	 34.29	+1	1300566..1301816	+	416	57238124	purD	CJE1387	-	phosphoribosylamine--glycine ligase
1346	 33.11	0	1301813..1302265	+	150	57238125	-	CJE1388	-	hypothetical protein
1347	 31.53	0	1302255..1304303	+	682	57238126	-	CJE1389	-	organic solvent tolerance protein, putative
1348	 36.20	+1	1304373..1306532	+	719	57238127	pnp	CJE1390	-	polynucleotide phosphorylase/polyadenylase
1349	 30.64	0	1306529..1307011	+	160	57238128	-	CJE1391	-	hypothetical protein
1350	 30.47	0	1307062..1307724	-	220	57238129	-	CJE1392	-	hypothetical protein
1351	 30.92	0	1308976..1309431	+	151	57238130	-	CJE1394	-	low molecular weight phosphotyrosine protein phosphatase family protein
1352	 35.26	+1	1309683..1310978	+	431	57238131	porA	CJE1395	-	major outer membrane protein
1353	 33.51	0	1311094..1312215	-	373	57238132	dnaJ-2	CJE1396	-	co-chaperone protein DnaJ
1354	 32.44	0	1312372..1313043	+	223	57238133	racR	CJE1397	-	DNA-binding response regulator
1355	 29.13	0	1313040..1314275	+	411	57238134	racS	CJE1398	-	sensor histidine kinase
1356	 30.54	0	1314275..1314847	+	190	57238135	recR	CJE1399	-	recombination protein RecR
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.