IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1215	 30.70	0	1172031..1172828	+	265	57237995	-	CJE1256	-	hypothetical protein
1216	 31.55	0	1172819..1173547	-	242	57237996	pssA	CJE1257	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1217	 27.83	0	1173557..1174174	-	205	57237997	-	CJE1258	-	phosphatidylserine decarboxylase-related protein
1218	 34.42	+1	1174171..1176108	-	645	57237998	ftsH	CJE1259	-	cell division protein FtsH
1219	 27.54	0	1176112..1176957	-	281	57237999	prmA	CJE1260	-	ribosomal protein L11 methyltransferase
1220	 34.61	+1	1176980..1177372	-	130	57238000	cheY	CJE1261	-	chemotaxis protein CheY
1221	 29.98	0	1177485..1178378	-	297	57238001	pglG	CJE1262	-	general glycosylation pathway protein
1222	 30.51	0	1178378..1180150	-	590	57238002	pglF	CJE1263	-	general glycosylation pathway protein
1223	 30.92	0	1180152..1181312	-	386	57238003	pglE	CJE1264	-	general glycosylation pathway protein
1224	 30.56	0	1181410..1182021	-	203	57238004	pglD	CJE1265	-	general glycosylation pathway protein
1225	 31.84	0	1181987..1182589	-	200	57238005	pglC	CJE1266	-	general glycosylation pathway protein
1226	 30.15	0	1182582..1183712	-	376	57238006	pglA	CJE1267	-	general glycosylation pathway protein
1227	 29.23	0	1183722..1185863	-	713	57238007	pglB	CJE1268	-	general glycosylation pathway protein
1228	 29.69	0	1185867..1186964	-	365	57238008	pglJ	CJE1269	-	general glycosylation pathway protein
1229	 29.25	0	1186952..1187881	-	309	57238009	pglI	CJE1270	-	general glycosylation pathway protein
1230	 30.36	0	1187874..1188950	-	358	57238010	pglH	CJE1271	-	general glycosylation pathway protein
1231	 28.20	0	1188950..1190644	-	564	57238011	wlaB	CJE1272	-	ABC transporter, ATP-binding/permease protein
1232	 33.94	0	1190638..1191624	-	328	57238012	galE	CJE1273	-	UDP-glucose 4-epimerase
1233	 29.43	0	1191683..1192477	-	264	57238013	wlaX	CJE1274	-	polysaccharide biosynthesis protein
1234	 29.35	0	1192544..1193572	+	342	57238014	waaC	CJE1275	-	lipopolysaccharide heptosyltransferase I
1235	 31.19	0	1193562..1194449	+	295	57238015	waaM	CJE1276	-	lipid A biosynthesis lauroyl acyltransferase
1236	 26.31	0	1194446..1195996	+	516	57238016	-	CJE1277	-	lipooligosaccharide biosynthesis glycosyltransferase, putative
1237	 21.28	-2	1195965..1196852	-	295	57238017	-	CJE1278	-	lipooligosaccharide biosynthesis galactosyltransferase, putative
1238	 24.07	-1	1196845..1198053	-	402	57238018	-	CJE1279	-	lipooligosaccharide biosynthesis glycosyltransferase, putative
1239	 21.91	-2	1198131..1199102	-	323	57238019	-	CJE1280	-	lipooligosaccharide biosynthesis galactosyltransferase, putative
1240	 26.13	-1	1199095..1199982	-	295	57238020	-	CJE1281	-	hypothetical protein
1241	 25.80	-1	1200036..1200845	-	269	57238021	waaV	CJE1282	-	lipooligosaccharide biosynthesis glycosyltransferase
1242	 32.39	0	1200904..1201854	+	316	57238022	waaF	CJE1283	-	ADP-heptose--LPS heptosyltransferase II
1243	 26.67	0	1201840..1202604	-	254	57238023	-	CJE1284	-	lipooligosaccharide biosynthesis glycosyltransferase, putative
1244	 35.65	+1	1202604..1203164	-	186	57238024	gmhA-1	CJE1285	-	phosphoheptose isomerase
1245	 33.26	0	1203161..1204546	-	461	57238025	hldE	CJE1286	-	D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase
1246	 30.29	0	1204539..1205492	-	317	57238026	waaD	CJE1287	-	ADP-L-glycero-D-mannoheptose-6-epimerase
1247	 25.00	-1	1205493..1206020	-	175	57238027	-	CJE1288	-	hydrolase, putative
1248	 32.67	0	1206135..1206437	+	100	57238028	cyf	CJE1289	-	cytochrome c553
1249	 28.99	0	1206460..1206666	-	68	57238029	-	CJE1290	-	cytochrome oxidase maturation protein, cbb3-type, putative
1250	 30.65	0	1206663..1209014	-	783	57238030	-	CJE1291	-	heavy metal translocating P-type ATPase
1251	 35.95	+1	1209129..1210427	+	432	57238031	rho	CJE1292	-	transcription termination factor Rho
1252	 31.96	0	1210431..1211960	+	509	57238032	dnaX	CJE1293	-	DNA polymerase III subunits gamma and tau
1253	 30.86	0	1212547..1214646	-	699	57238033	-	CJE1295	-	copper-translocating P-type ATPase
1254	 23.08	-1	1214646..1214840	-	64	57238034	-	CJE1296	-	hypothetical protein
1255	 31.55	0	1214830..1215780	-	316	57238035	-	CJE1297	-	cation efflux family protein
1256	 36.74	+1	1215856..1216119	-	87	57238036	-	CJE1298	-	hypothetical protein
1257	 32.12	0	1216189..1216683	-	164	57238037	-	CJE1299	-	hypothetical protein
1258	 30.50	0	1216680..1217456	-	258	57238038	-	CJE1300	-	hypothetical protein
1259	 30.31	0	1217523..1218449	+	308	57238039	ldh	CJE1301	-	L-lactate dehydrogenase
1260	 29.73	0	1218412..1219050	-	212	57238040	-	CJE1302	-	DedA family protein
1261	 37.72	+1	1219131..1219358	-	75	57238041	-	CJE1303	-	hypothetical protein
1262	 35.71	+1	1219369..1220799	-	476	57238042	-	CJE1304	-	hypothetical protein
1263	 35.61	+1	1220963..1221445	-	160	57238043	ppiB	CJE1305	-	peptidyl-prolyl cis-trans isomerase B
1264	 35.88	+1	1221455..1222162	-	235	57238044	-	CJE1306	-	hypothetical protein
1265	 27.49	0	1222267..1222608	+	113	57238045	-	CJE1307	-	SMR family multidrug efflux pump
1266	 28.16	0	1222608..1222916	+	102	57238046	-	CJE1308	-	SMR family multidrug efflux pump
1267	 31.51	0	1222934..1224526	-	530	57238047	argS	CJE1309	-	arginyl-tRNA synthetase
1268	 29.17	0	1224538..1224777	-	79	57238048	-	CJE1310	-	twin arginine-targeting protein translocase
1269	 29.77	0	1224779..1225396	-	205	57238049	gmk	CJE1311	-	guanylate kinase
1270	 30.11	0	1225399..1227042	-	547	57238050	-	CJE1312	-	hypothetical protein
1271	 27.73	0	1227099..1227866	-	255	57238051	fliR	CJE1313	-	flagellar biosynthesis protein FliR
1272	 30.50	0	1227853..1228488	-	211	57238052	-	CJE1314	-	ABC transporter, ATP-binding protein
1273	 34.17	+1	1228501..1229574	-	357	57238053	tsf	CJE1315	-	elongation factor Ts
1274	 33.96	0	1229574..1230365	-	263	57238054	rpsB	CJE1316	-	30S ribosomal protein S2
1275	 28.95	0	1230481..1231644	-	387	57238055	-	CJE1317	-	cyclopropane-fatty-acyl-phospholipid synthase, putative
1276	 32.80	0	1231772..1232896	-	374	57238056	petC	CJE1318	-	ubiquinol--cytochrome c reductase, cytochrome c1 subunit
1277	 33.73	0	1232893..1234143	-	416	57238057	petB	CJE1319	-	ubiquinol--cytochrome c reductase, cytochrome b subunit
1278	 39.68	+2	1234145..1234648	-	167	57238058	petA	CJE1320	-	ubiquinol--cytochrome c reductase, iron-sulfur subunit
1279	 26.96	0	1234739..1236025	-	428	57238059	arsB	CJE1321	-	arsenical pump membrane protein
1280	 33.39	0	1236026..1237885	-	619	57238060	gidA	CJE1322	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1281	 28.31	0	1237973..1238470	-	165	57238061	-	CJE1323	-	methyl-accepting chemotaxis protein
1282	 30.43	0	1238488..1239867	-	459	57238062	-	CJE1324	-	methyl-accepting chemotaxis protein
1283	 27.27	0	1239984..1240478	-	164	57238063	-	CJE1325	-	methyl-accepting chemotaxis protein
1284	 33.49	0	1240825..1242123	+	432	57238064	dctA	CJE1326	-	C4-dicarboxylate transport protein
1285	 27.39	0	1242120..1242926	-	268	57238065	-	CJE1327	-	hypothetical protein
1286	 32.68	0	1243068..1244594	+	508	57238066	-	CJE1328	-	phosphate transporter family protein
1287	 29.18	0	1244602..1245780	-	392	57238067	-	CJE1329	-	dihydroorotase
1288	 32.55	0	1245790..1246683	-	297	57238068	gpsA	CJE1330	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1289	 33.33	0	1246683..1248101	-	472	57238069	gatB	CJE1331	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1290	 33.94	0	1248216..1248710	+	164	57238070	luxS	CJE1332	-	S-ribosylhomocysteinase
1291	 31.42	0	1249021..1250013	+	330	57238071	-	CJE1333	-	2OG-Fe(II) oxygenase family oxidoreductase
1292	 32.07	0	1250006..1250794	+	262	57238072	-	CJE1334	-	NLPA family lipoprotein
1293	 32.19	0	1250806..1253070	+	754	57238073	metE	CJE1335	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1294	 30.39	0	1253080..1253928	+	282	57238074	metF	CJE1336	-	5,10-methylenetetrahydrofolate reductase
1295	 23.96	-1	1253950..1254141	-	63	57238075	-	CJE1337	-	hypothetical protein
1296	 33.48	0	1254138..1254818	-	226	57238076	atpB	CJE1338	-	F0F1 ATP synthase subunit A
1297	 35.65	+1	1254887..1256227	-	446	57238077	radA	CJE1339	-	DNA repair protein RadA
1298	 32.41	0	1256227..1257093	-	288	57238078	ftsY	CJE1340	-	signal recognition particle-docking protein FtsY
1299	 28.32	0	1257093..1257650	-	185	57238079	-	CJE1341	-	putative lipoprotein
1300	 24.72	-1	1257733..1258359	+	208	57238080	-	CJE1342	-	hypothetical protein
1301	 33.98	0	1258280..1259833	+	517	57238081	-	CJE1343	-	phosphodiesterase
1302	 27.96	0	1259842..1260399	+	185	57238082	-	CJE1344	-	DedA family protein
1303	 23.57	-1	1260399..1261658	+	419	57238722	-	CJE1345	-	ComEC/Rec2 family protein
1304	 26.77	0	1261602..1262408	-	268	57238083	rbn	CJE1346	-	ribonuclease BN
1305	 33.77	0	1262412..1263794	-	460	57238084	glcD	CJE1347	-	glycolate oxidase, subunit GlcD
1306	 31.79	0	1263797..1264507	-	236	57238085	-	CJE1348	-	hypothetical protein
1307	 17.65	-2	1264515..1264616	-	33	57238086	-	CJE1349	-	hypothetical protein
1308	 32.13	0	1264644..1265804	+	386	57238087	-	CJE1350	-	M24/M37 family peptidase
1309	 28.43	0	1265801..1266004	-	67	57238088	-	CJE1351	-	hypothetical protein
1310	 27.02	0	1266006..1266686	-	226	57238089	-	CJE1352	-	hypothetical protein
1311	 31.54	0	1266650..1267261	-	203	57238090	ribE	CJE1353	-	riboflavin synthase subunit alpha
1312	 28.45	0	1267270..1269810	-	846	57238091	-	CJE1354	-	hypothetical protein
1313	 29.50	0	1269972..1270232	+	86	57238092	groES	CJE1355	-	co-chaperonin GroES
1314	 36.75	+1	1270253..1271890	+	545	57238093	groEL	CJE1356	-	chaperonin GroEL
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.