IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
78	 37.40	+1	96514..97842	+	442	57237095	dcuA	CJE0083	-	anaerobic C4-dicarboxylate transporter
79	 27.39	0	97948..99309	+	453	57237096	-	CJE0084	-	putative lipoprotein
80	 27.37	0	99319..99687	+	122	57237097	-	CJE0085	-	putative lipoprotein
81	 34.78	+1	99711..100334	+	207	57237098	-	CJE0086	-	putative lipoprotein
82	 31.02	0	100417..101754	+	445	57237099	-	CJE0087	-	hypothetical protein
83	 32.75	0	101764..102966	+	400	57237100	-	CJE0088	-	hypothetical protein
84	 34.95	+1	103125..103433	+	102	57237101	rplU	CJE0089	-	50S ribosomal protein L21
85	 37.25	+1	103444..103698	+	84	57237102	rpmA	CJE0090	-	50S ribosomal protein L27
86	 35.99	+1	103805..104857	+	350	57237103	obgE	CJE0091	-	GTPase ObgE
87	 32.01	0	104962..105717	+	251	57237104	proB	CJE0092	-	gamma-glutamyl kinase
88	 32.57	0	105791..106708	+	305	57237105	fmt	CJE0093	-	methionyl-tRNA formyltransferase
89	 28.44	0	106671..107324	+	217	57237106	-	CJE0094	-	biotin--protein ligase
90	 31.04	0	107321..108106	+	261	57237107	-	CJE0095	-	ParA family chromosome partitioning ATPase
91	 25.93	-1	108112..108948	+	278	57237108	-	CJE0096	-	ParB family chromosome partitioning protein
92	 28.17	0	109009..109434	+	141	57237109	-	CJE0097	-	F0F1 ATP synthase subunit B'
93	 25.54	-1	109445..109957	+	170	57237110	-	CJE0098	-	F0F1 ATP synthase subunit B
94	 21.84	-2	109960..110481	+	173	57237111	atpH	CJE0099	-	F0F1 ATP synthase subunit delta
95	 35.33	+1	110495..112000	+	501	57237112	atpA	CJE0100	-	F0F1 ATP synthase subunit alpha
96	 28.93	0	112009..112893	+	294	57237113	atpG	CJE0101	-	F0F1 ATP synthase subunit gamma
97	 35.12	+1	112919..114316	+	465	57237114	atpD	CJE0102	-	F0F1 ATP synthase subunit beta
98	 35.13	+1	114320..114709	+	129	57237115	atpC	CJE0103	-	F0F1 ATP synthase subunit epsilon
99	 29.91	0	114709..115263	+	184	57237116	-	CJE0104	-	MotA/TolQ/ExbB proton channel family protein
100	 28.21	0	115272..115661	+	129	57237117	-	CJE0105	-	TonB system transport protein ExbD, putative
101	 29.10	0	115664..116443	+	259	57237118	-	CJE0106	-	TonB domain-containing protein
102	 29.69	0	116453..117661	+	402	57237119	tolB	CJE0107	-	translocation protein TolB
103	 33.94	0	117738..118235	+	165	57237120	-	CJE0108	-	peptidoglycan-associated lipoprotein Omp18
104	 26.27	0	118239..119186	+	315	57237121	-	CJE0109	-	hypothetical protein
105	 36.84	+1	119201..119770	+	189	57237122	slyD	CJE0110	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
106	 33.55	0	119770..120690	+	306	57237123	fabD	CJE0111	-	malonyl CoA-acyl carrier protein transacylase
107	 33.91	0	120687..121376	+	229	57237124	mtnA	CJE0112	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
108	 35.58	+1	121373..122128	+	251	57237125	-	CJE0113	-	PP-loop family protein
109	 27.39	0	122133..122654	+	173	57237126	-	CJE0114	-	pyrazinamidase/nicotinamidase, putative
110	 28.29	0	122654..123268	+	204	57237127	-	CJE0115	-	hypothetical protein
111	 31.37	0	123265..123672	+	135	57237128	-	CJE0116	-	putative metalloprotease
112	 28.41	0	123796..124485	+	229	57237129	-	CJE0117	-	hypothetical protein
113	 33.76	0	124510..125436	-	308	57237130	dusB	CJE0118	-	tRNA-dihydrouridine synthase B
114	 26.04	-1	125433..126419	-	328	57237131	-	CJE0119	-	hypothetical protein
115	 31.40	0	126409..126771	-	120	57237132	-	CJE0120	-	dnaK suppressor protein, putative
116	 27.71	0	126783..127244	-	153	57237133	-	CJE0121	-	hypothetical protein
117	 33.81	0	127234..128076	-	280	57237134	accD	CJE0122	-	acetyl-CoA carboxylase subunit beta
118	 28.63	0	128085..128807	-	240	57237135	-	CJE0123	-	inositol monophosphatase family protein
119	 31.40	0	128807..131026	-	739	57237136	-	CJE0124	-	OMP85 family outer membrane protein
120	 30.31	0	131103..131930	+	275	57237137	tyrA	CJE0125	-	prephenate dehydrogenase
121	 29.84	0	132010..133383	+	457	57237138	-	CJE0126	-	M24/M37 family peptidase
122	 31.19	0	133383..134267	+	294	57237139	lpxC	CJE0127	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
123	 25.62	-1	134306..134707	+	133	57237140	-	CJE0128	-	hypothetical protein
124	 30.94	0	134716..135594	+	292	57237141	thrB	CJE0129	-	homoserine kinase
125	 27.52	0	135619..135876	+	85	57237142	-	CJE0130	-	hypothetical protein
126	 35.09	+1	135863..138478	+	871	57237143	infB	CJE0131	-	translation initiation factor IF-2
127	 31.40	0	138475..138837	+	120	57237144	rbfA	CJE0132	-	ribosome-binding factor A
128	 30.73	0	138827..139249	+	140	57237145	-	CJE0133	-	hypothetical protein
129	 25.19	-1	139354..141342	+	662	57237146	-	CJE0134	-	McrBC restriction endonuclease system, McrB subunit, putative
130	 25.68	-1	141335..142666	+	443	57237147	-	CJE0135	-	hypothetical protein
131	 33.08	0	142655..143458	-	267	57237148	-	CJE0136	-	cation ABC transporter, permease protein
132	 29.36	0	143451..144305	-	284	57237149	-	CJE0137	-	cation ABC transporter, ATP-binding protein
133	 26.37	0	144318..145208	-	296	57237150	-	CJE0138	-	cation ABC transporter, periplasmic cation-binding protein
134	 26.67	0	145477..145806	+	109	57237151	-	CJE0139	-	hypothetical protein
135	 31.24	0	145824..147446	+	540	57237152	-	CJE0140	-	methyl-accepting chemotaxis protein
136	 32.83	0	147581..149362	+	593	57237153	-	CJE0141	-	hypothetical protein
137	 35.57	+1	149400..150338	-	312	57237154	trxB	CJE0142	-	thioredoxin-disulfide reductase
138	 34.60	+1	150472..150786	-	104	57237155	trx	CJE0143	-	thioredoxin
139	 24.19	-1	150843..151181	-	112	57237156	-	CJE0144	-	hypothetical protein
140	 31.49	0	151181..152428	-	415	57237157	hom	CJE0145	-	homoserine dehydrogenase
141	 34.08	+1	152432..153634	-	400	57237158	-	CJE0146	-	aspartate aminotransferase
142	 24.54	-1	153646..154452	-	268	57237159	-	CJE0147	-	hypothetical protein
143	 27.58	0	154446..155384	-	312	57237160	-	CJE0148	-	hypothetical protein
144	 31.87	0	155377..156060	-	227	57237161	-	CJE0149	-	RNA methyltransferase
145	 28.73	0	156074..156898	-	274	57237162	-	CJE0150	-	tetrapyrrole methylase family protein
146	 31.34	0	156901..157101	-	66	57237163	rpmE	CJE0151	-	50S ribosomal protein L31
147	 25.72	-1	157180..157836	-	218	57237164	-	CJE0152	-	hypothetical protein
148	 24.51	-1	157838..158245	-	135	57237165	-	CJE0153	-	hypothetical protein
149	 27.70	0	158245..158670	-	141	57237166	-	CJE0154	-	cytochrome c family protein
150	 28.69	0	158670..159251	-	193	57237167	-	CJE0155	-	6-pyruvoyl tetrahydrobiopterin synthase-like protein
151	 26.21	0	159248..159991	-	247	57237168	-	CJE0156	-	radical SAM domain-containing protein
152	 29.39	0	159994..160956	-	320	57237169	moaA	CJE0157	-	molybdenum cofactor biosynthesis protein A
153	 27.33	0	160969..161484	-	171	57237170	-	CJE0158	-	hypothetical protein
154	 25.90	-1	161481..161978	-	165	57237171	-	CJE0159	-	hypothetical protein
155	 30.73	0	161969..162853	-	294	57237172	ubiA	CJE0160	-	prenyltransferase
156	 26.78	0	162924..163793	+	289	57237173	miaA	CJE0161	-	tRNA delta(2)-isopentenylpyrophosphate transferase
157	 27.48	0	163779..164342	-	187	57237174	-	CJE0162	-	hypothetical protein
158	 33.88	0	164700..164882	-	60	57237175	-	CJE0163	-	hypothetical protein
159	 32.58	0	165146..165808	+	220	57237176	sodB	CJE0164	-	superoxide dismutase, Fe
160	 35.07	+1	165836..167041	-	401	57237177	-	CJE0165	-	saccharopine dehydrogenase
161	 26.95	0	167083..167991	-	302	57237178	-	CJE0166	-	iron ABC transporter, ATP binding subunit
162	 26.04	-1	167975..169591	-	538	57237179	-	CJE0167	-	iron ABC transporter, permease protein
163	 30.65	0	169591..170595	-	334	57237180	-	CJE0168	-	iron ABC transporter, periplasmic iron-binding protein
164	 20.00	-2	170606..170815	-	69	57237181	-	CJE0169	-	hypothetical protein
165	 28.99	0	170945..171796	+	283	57237182	-	CJE0170	-	TonB-dependent colicin lipoprotein, putative
166	 34.30	+1	171793..174060	+	755	57237183	-	CJE0171	-	TonB-dependent colicin receptor protein, putative
167	 30.58	0	174072..174833	+	253	57237184	exbB-1	CJE0172	-	TonB system transport protein ExbB
168	 28.22	0	174820..175230	+	136	57237185	-	CJE0173	-	biopolymer  ExbD/TolR family transporter
169	 30.39	0	175232..175978	+	248	57237186	-	CJE0174	-	TonB-dependent colicin receptor protein, putative
170	 28.83	0	176030..177229	+	399	57237187	-	CJE0175	-	putative transporter
171	 32.09	0	177400..178686	+	428	57237188	-	CJE0176	-	transporter, putative
172	 26.92	0	178700..179884	-	394	57237189	-	CJE0177	-	Ser/Thr protein phosphatase family protein
173	 30.95	0	179894..180103	-	69	57237190	-	CJE0178	-	PhnA domain-containing protein
174	 31.94	0	180096..180815	-	239	57237191	-	CJE0179	-	TerC family integral membrane protein
175	 29.28	0	180887..181453	-	188	57237192	purN	CJE0180	-	phosphoribosylglycinamide formyltransferase
176	 28.45	0	181444..182814	-	456	57237193	-	CJE0181	-	hypothetical protein
177	 28.04	0	182798..183496	-	232	57237194	-	CJE0182	-	hypothetical protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.