IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1058	 26.49	0	1021914..1022585	-	223	57237839	-	CJE1094	-	phage integrase family site specific recombinase
1059	 21.84	-2	1022591..1022851	-	86	57237840	-	CJE1095	-	hypothetical protein
1060	 17.75	-2	1023081..1023311	+	76	57237841	-	CJE1096	-	hypothetical protein
1061	 24.79	-1	1023559..1023675	-	38	57237842	-	CJE1097	-	hypothetical protein
1062	 29.17	0	1023863..1024006	-	47	57237843	-	CJE1098	-	hypothetical protein
1063	 23.48	-1	1024050..1024181	-	43	57237844	-	CJE1099	-	hypothetical protein
1064	 27.78	0	1024202..1024489	-	95	57237845	-	CJE1100	-	death-on-curing family protein
1065	 27.33	0	1024486..1024635	-	49	57237846	-	CJE1101	-	hypothetical protein
1066	 28.07	0	1024907..1025134	+	75	57237847	-	CJE1102	-	hypothetical protein
1067	 21.67	-2	1025103..1025402	+	99	57237848	-	CJE1103	-	hypothetical protein
1068	 35.12	+1	1025481..1025648	+	55	57237849	-	CJE1104	-	hypothetical protein
1069	 34.77	+1	1025669..1026223	-	184	57237850	-	CJE1105	-	hypothetical protein
1070	 36.30	+1	1026192..1026596	-	134	57237851	-	CJE1106	-	hypothetical protein
1071	 35.41	+1	1026778..1028367	-	529	57237852	-	CJE1107	-	TraG-like protein
1072	 31.48	0	1028406..1028567	-	53	57237853	-	CJE1108	-	hypothetical protein
1073	 20.47	-2	1028815..1029615	-	266	57237854	-	CJE1109	-	hypothetical protein
1074	 31.16	0	1029669..1030955	-	428	57237855	-	CJE1110	-	hypothetical protein
1075	 31.31	0	1031031..1032317	-	428	57237856	-	CJE1111	-	hypothetical protein
1076	 28.18	0	1032328..1033065	-	245	57237857	-	CJE1112	-	hypothetical protein
1077	 22.39	-1	1033187..1035799	-	870	57237858	-	CJE1113	-	hypothetical protein
1078	 26.14	-1	1035796..1037226	-	476	57237859	-	CJE1114	-	hypothetical protein
1079	 26.41	0	1037234..1038736	-	500	57237860	-	CJE1115	-	hypothetical protein
1080	 24.84	-1	1038746..1039051	-	101	57237861	-	CJE1116	-	hypothetical protein
1081	 27.44	0	1039102..1039593	-	163	57237862	-	CJE1117	-	hypothetical protein
1082	 18.57	-2	1040222..1040458	-	78	57237863	-	CJE1118	-	hypothetical protein
1083	 33.79	0	1040538..1040756	+	72	57237864	-	CJE1119	-	hypothetical protein
1084	 26.52	0	1040819..1040950	+	43	57237865	-	CJE1120	-	hypothetical protein
1085	 25.21	-1	1042357..1042590	-	77	57237866	-	CJE1122	-	hypothetical protein
1086	 21.18	-2	1042587..1042874	-	95	57237867	-	CJE1123	-	hypothetical protein
1087	 28.36	0	1043022..1043564	-	180	57237868	-	CJE1124	-	hypothetical protein
1088	 28.33	0	1043806..1043925	-	39	57237869	-	CJE1125	-	hypothetical protein
1089	 25.84	-1	1043942..1044208	-	88	57237870	-	CJE1126	-	hypothetical protein
1090	 23.89	-1	1044211..1044771	-	186	57237871	-	CJE1127	-	hypothetical protein
1091	 16.28	-2	1044811..1044939	-	42	57237872	-	CJE1128	-	hypothetical protein
1092	 33.33	0	1045351..1045557	-	68	57237873	-	CJE1129	-	hypothetical protein
1093	 25.64	-1	1045630..1046097	+	155	57237874	-	CJE1130	-	hypothetical protein
1094	 26.67	0	1046112..1046321	+	69	57237875	-	CJE1131	-	hypothetical protein
1095	 21.36	-2	1046363..1046788	+	141	57237876	-	CJE1132	-	hypothetical protein
1096	 27.81	0	1046785..1047834	+	349	57237877	-	CJE1133	-	hypothetical protein
1097	 23.46	-1	1047837..1048079	+	80	57237878	-	CJE1134	-	hypothetical protein
1098	 27.29	0	1048069..1049937	+	622	57237879	-	CJE1135	-	hypothetical protein
1099	 28.51	0	1049927..1050673	+	248	57237880	-	CJE1136	-	hypothetical protein
1100	 25.83	-1	1050718..1054650	+	1310	57237881	-	CJE1137	-	hypothetical protein
1101	 31.84	0	1054669..1055937	+	422	57237882	-	CJE1138	-	hypothetical protein
1102	 25.67	-1	1055941..1056840	-	299	57237883	-	CJE1139	-	hypothetical protein
1103	 25.56	-1	1057767..1059182	+	471	57237884	-	CJE1141	-	hypothetical protein
1104	 30.43	0	1059374..1060270	+	298	57237885	-	CJE1142	-	hypothetical protein
1105	 24.33	-1	1060350..1061093	+	247	57237886	-	CJE1143	-	hypothetical protein
1106	 24.76	-1	1061080..1061184	+	34	57237887	-	CJE1144	-	hypothetical protein
1107	 23.19	-1	1061185..1061529	+	114	57237888	-	CJE1145	-	hypothetical protein
1108	 23.49	-1	1061519..1062595	+	358	57237889	-	CJE1146	-	hypothetical protein
1109	 23.47	-1	1062598..1063611	+	337	57237890	-	CJE1147	-	hypothetical protein
1110	 24.14	-1	1063657..1064526	+	289	57237891	-	CJE1148	-	hypothetical protein
1111	 21.37	-2	1064519..1064635	+	38	57237892	-	CJE1149	-	hypothetical protein
1112	 22.48	-1	1064610..1065374	+	254	57237893	-	CJE1150	-	hypothetical protein
1113	 25.68	-1	1065358..1068297	+	979	57237894	-	CJE1151	-	hypothetical protein
1114	 25.14	-1	1068290..1069546	+	418	57237895	-	CJE1152	-	hypothetical protein
1115	 27.00	0	1069546..1070808	+	420	57237896	-	CJE1153	-	hypothetical protein
1116	 25.35	-1	1070821..1071033	+	70	57237897	-	CJE1154	-	hypothetical protein
1117	 36.75	+1	1071640..1071756	+	38	57237898	-	CJE1155	-	hypothetical protein
1118	 28.82	0	1071875..1072339	-	154	57237899	-	CJE1156	-	hypothetical protein
1119	 29.79	0	1072340..1075585	-	1081	57237900	-	CJE1157	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
1120	 32.33	0	1075603..1076298	-	231	57237901	livF	CJE1158	-	high affinity branched-chain amino acid ABC transporter, ATP-binding protein
1121	 31.00	0	1076285..1077055	-	256	57237902	livG	CJE1159	-	high affinity branched-chain amino acid ABC transporter, ATP-binding protein
1122	 32.19	0	1077052..1078104	-	350	57237903	livM	CJE1160	-	high affinity branched-chain amino acid ABC transporter, permease protein
1123	 33.78	0	1078104..1079000	-	298	57237904	livH	CJE1161	-	high affinity branched-chain amino acid ABC transporter, permease protein
1124	 32.07	0	1079019..1080128	-	369	57237905	-	CJE1162	-	high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
1125	 31.18	0	1080150..1081265	-	371	57237906	-	CJE1163	-	high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
1126	 30.34	0	1081296..1081730	-	144	57237907	-	CJE1164	-	cytochrome c family protein
1127	 22.92	-1	1081739..1081930	-	63	57237908	-	CJE1165	-	porin domain-containing protein
1128	 29.39	0	1081983..1082489	-	168	57237909	-	CJE1166	-	hypothetical protein
1129	 32.27	0	1082498..1083529	-	343	57237910	asd	CJE1167	-	aspartate-semialdehyde dehydrogenase
1130	 28.80	0	1083529..1084830	-	433	57237911	-	CJE1168	-	sigma-54 dependent DNA-binding response regulator
1131	 28.89	0	1084887..1085336	-	149	57237912	-	CJE1169	-	hypothetical protein
1132	 36.43	+1	1085312..1085827	-	171	57237913	-	CJE1170	-	putative lipoprotein
1133	 33.37	0	1085894..1088482	-	862	57237914	gyrA	CJE1171	-	DNA gyrase subunit A
1134	 26.74	0	1088523..1089098	-	191	57237915	ctsW	CJE1172	-	transformation system protein
1135	 28.53	0	1089095..1089739	-	214	57237916	mapA	CJE1173	-	outer membrane liproprotein MapA
1136	 33.39	0	1089816..1091612	-	598	57237917	lepA	CJE1174	-	GTP-binding protein LepA
1137	 30.63	0	1093009..1093749	+	246	57237918	-	CJE1176	-	hypothetical protein
1138	 31.71	0	1093752..1096769	+	1005	57237919	-	CJE1177	-	AcrB/AcrD/AcrF family protein
1139	 26.02	-1	1096793..1097599	-	268	57237920	-	CJE1178	-	adenylosuccinate lyase
1140	 27.92	0	1097600..1098319	-	239	57237921	-	CJE1179	-	arginyl-tRNA-protein transferase
1141	 26.59	0	1098319..1098570	-	83	57237922	-	CJE1180	-	hypothetical protein
1142	 33.82	0	1098574..1100019	-	481	57237923	accC-1	CJE1181	-	acetyl-CoA carboxylase
1143	 31.96	0	1100159..1101322	+	387	57237924	-	CJE1182	-	cell cycle protein FtsW
1144	 29.93	0	1101319..1102347	+	342	57237925	murG	CJE1183	-	N-acetylglucosaminyl transferase
1145	 28.95	0	1102318..1103481	-	387	57237926	-	CJE1184	-	hypothetical protein
1146	 28.64	0	1103489..1104340	-	283	57237927	-	CJE1185	-	hypothetical protein
1147	 25.36	-1	1104403..1105293	-	296	57237928	-	CJE1186	-	AraC family transcriptional regulator
1148	 30.69	0	1105290..1105895	-	201	57237929	-	CJE1187	-	thiamine-phosphate pyrophosphorylase, putative
1149	 34.90	+1	1105885..1107030	-	381	57237930	thiH	CJE1188	-	thiamine biosynthesis protein ThiH
1150	 39.00	+2	1107033..1107809	-	258	57237931	thiG	CJE1189	-	thiazole synthase
1151	 34.33	+1	1107812..1108615	-	267	57237932	thiF	CJE1190	-	thiamine biosynthesis protein ThiF
1152	 29.17	0	1108612..1108803	-	63	57237933	thiS	CJE1191	-	thiamine biosynthesis protein ThiS
1153	 36.07	+1	1108813..1109910	-	365	57237934	dapE	CJE1192	-	succinyl-diaminopimelate desuccinylase
1154	 28.83	0	1109915..1110514	-	199	57237935	-	CJE1193	-	amino acid transporter LysE
1155	 33.90	0	1110507..1111208	-	233	57237936	-	CJE1194	-	NAD-dependent deacetylase
1156	 26.76	0	1111251..1115282	-	1343	57237937	-	CJE1195	-	type II restriction-modification enzyme
1157	 32.52	0	1115291..1117498	-	735	57237938	mutS	CJE1196	-	recombination and DNA strand exchange inhibitor protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.