IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1010	 24.96	-1	980303..980911	+	202	57237791	-	CJE1043	-	hypothetical protein
1011	 29.22	0	980908..982098	+	396	57237792	-	CJE1044	-	hypothetical protein
1012	 26.40	0	982090..982464	-	124	57237793	-	CJE1045	-	thioesterase family protein
1013	 35.35	+1	982572..982670	-	32	57237794	-	CJE1046	-	hypothetical protein
1014	 23.26	-1	984859..984987	+	42	57237795	-	CJE1048	-	hypothetical protein
1015	 30.70	0	985084..985197	+	37	57237796	-	CJE1049	-	hypothetical protein
1016	 32.20	0	985215..985391	+	58	57237797	-	CJE1050	-	hypothetical protein
1017	 30.70	0	985388..985501	-	37	57237798	-	CJE1051	-	hypothetical protein
1018	 28.81	0	985554..986084	+	176	57237799	-	CJE1052	-	hypothetical protein
1019	 33.33	0	986086..986409	+	107	57237800	-	CJE1053	-	hypothetical protein
1020	 31.15	0	986550..986732	+	60	57237801	-	CJE1054	-	hypothetical protein
1021	 15.91	-2	986744..986875	-	43	57237802	-	CJE1055	-	hypothetical protein
1022	 30.02	0	988820..989695	+	291	57237803	-	CJE1058	-	methyltransferase, putative
1023	 35.92	+1	989768..990346	+	192	57237804	-	CJE1059	-	hypothetical protein
1024	 29.89	0	990347..990520	-	57	57237805	-	CJE1060	-	putative lipoprotein
1025	 27.08	0	990529..991056	-	175	57237806	-	CJE1061	-	thermonuclease family protein
1026	 33.25	0	991124..992392	+	422	57237807	pepD	CJE1062	-	aminoacyl-histidine dipeptidase
1027	 30.85	0	992375..993622	-	415	57237808	cjaB	CJE1063	-	transport protein CjaB
1028	 33.33	0	993663..994502	-	279	57237809	-	CJE1064	-	surface antigen, CjaA
1029	 27.61	0	994722..995840	+	372	57237810	jlpA	CJE1065	-	surface-exposed lipoprotein
1030	 27.26	0	995932..996672	+	246	57237811	-	CJE1066	-	hypothetical protein
1031	 33.07	0	996676..997827	-	383	57237812	hipO	CJE1067	-	hippurate hydrolase
1032	 29.25	0	997829..998440	-	203	57237813	-	CJE1068	-	hypothetical protein
1033	 19.47	-2	998544..998882	+	112	57237814	-	CJE1069	-	hypothetical protein
1034	 24.28	-1	998885..999646	-	253	57237815	-	CJE1070	-	hypothetical protein
1035	 30.73	0	999643..1000908	-	421	57237816	-	CJE1071	-	iron-sulfur cluster-binding domain-containing protein
1036	 30.60	0	1000910..1002265	-	451	57237817	hemN	CJE1072	-	coproporphyrinogen III oxidase
1037	 31.10	0	1002252..1002743	-	163	57237818	-	CJE1073	-	hypothetical protein
1038	 34.96	+1	1002740..1003660	-	306	57237819	argF	CJE1074	-	ornithine carbamoyltransferase
1039	 33.64	0	1003657..1004640	-	327	57237820	hemB	CJE1075	-	delta-aminolevulinic acid dehydratase
1040	 30.84	0	1004698..1005258	+	186	57237821	ribA	CJE1076	-	GTP cyclohydrolase II
1041	 25.40	-1	1005259..1005825	+	188	57237822	gidB	CJE1077	-	methyltransferase GidB
1042	 30.54	0	1005841..1006413	-	190	57237823	-	CJE1078	-	hypothetical protein
1043	 33.42	0	1006508..1007605	-	365	57237824	-	CJE1079	-	hypothetical protein
1044	 26.19	0	1007718..1008599	+	293	57237825	-	CJE1080	-	LysR family transcriptional regulator
1045	 30.77	0	1008679..1010547	+	622	57237826	rpoD	CJE1081	-	RNA polymerase sigma factor RpoD
1046	 27.68	0	1010563..1011075	-	170	57237827	sixA	CJE1082	-	phosphohistidine phosphatase SixA
1047	 26.40	0	1011072..1011590	-	172	57237828	-	CJE1083	-	rhomboid family protein
1048	 24.94	-1	1011689..1012105	+	138	57237829	-	CJE1084	-	hypothetical protein
1049	 29.25	0	1012113..1013729	-	538	57237830	-	CJE1085	-	cell division protein FtsH, putative
1050	 30.86	0	1013733..1014983	-	416	57237831	-	CJE1086	-	MiaB-like tRNA modifying enzyme
1051	 27.23	0	1014980..1016551	-	523	57237832	-	CJE1087	-	mechanosensitive ion channel family protein
1052	 28.60	0	1016548..1017603	-	351	57237833	aroB	CJE1088	-	3-dehydroquinate synthase
1053	 27.41	0	1017649..1019049	-	466	57237834	-	CJE1089	-	TrkA domain-containing protein
1054	 32.89	0	1019079..1020200	+	373	57237835	tgt	CJE1090	-	queuine tRNA-ribosyltransferase
1055	 23.31	-1	1020202..1020969	+	255	57237836	-	CJE1091	-	hypothetical protein
1056	 24.07	-1	1021288..1021395	+	35	57237837	-	CJE1092	-	hypothetical protein
1057	 27.35	0	1021521..1021871	+	116	57237838	-	CJE1093	-	hypothetical protein
1058	 26.49	0	1021914..1022585	-	223	57237839	-	CJE1094	-	phage integrase family site specific recombinase
1059	 21.84	-2	1022591..1022851	-	86	57237840	-	CJE1095	-	hypothetical protein
1060	 17.75	-2	1023081..1023311	+	76	57237841	-	CJE1096	-	hypothetical protein
1061	 24.79	-1	1023559..1023675	-	38	57237842	-	CJE1097	-	hypothetical protein
1062	 29.17	0	1023863..1024006	-	47	57237843	-	CJE1098	-	hypothetical protein
1063	 23.48	-1	1024050..1024181	-	43	57237844	-	CJE1099	-	hypothetical protein
1064	 27.78	0	1024202..1024489	-	95	57237845	-	CJE1100	-	death-on-curing family protein
1065	 27.33	0	1024486..1024635	-	49	57237846	-	CJE1101	-	hypothetical protein
1066	 28.07	0	1024907..1025134	+	75	57237847	-	CJE1102	-	hypothetical protein
1067	 21.67	-2	1025103..1025402	+	99	57237848	-	CJE1103	-	hypothetical protein
1068	 35.12	+1	1025481..1025648	+	55	57237849	-	CJE1104	-	hypothetical protein
1069	 34.77	+1	1025669..1026223	-	184	57237850	-	CJE1105	-	hypothetical protein
1070	 36.30	+1	1026192..1026596	-	134	57237851	-	CJE1106	-	hypothetical protein
1071	 35.41	+1	1026778..1028367	-	529	57237852	-	CJE1107	-	TraG-like protein
1072	 31.48	0	1028406..1028567	-	53	57237853	-	CJE1108	-	hypothetical protein
1073	 20.47	-2	1028815..1029615	-	266	57237854	-	CJE1109	-	hypothetical protein
1074	 31.16	0	1029669..1030955	-	428	57237855	-	CJE1110	-	hypothetical protein
1075	 31.31	0	1031031..1032317	-	428	57237856	-	CJE1111	-	hypothetical protein
1076	 28.18	0	1032328..1033065	-	245	57237857	-	CJE1112	-	hypothetical protein
1077	 22.39	-1	1033187..1035799	-	870	57237858	-	CJE1113	-	hypothetical protein
1078	 26.14	-1	1035796..1037226	-	476	57237859	-	CJE1114	-	hypothetical protein
1079	 26.41	0	1037234..1038736	-	500	57237860	-	CJE1115	-	hypothetical protein
1080	 24.84	-1	1038746..1039051	-	101	57237861	-	CJE1116	-	hypothetical protein
1081	 27.44	0	1039102..1039593	-	163	57237862	-	CJE1117	-	hypothetical protein
1082	 18.57	-2	1040222..1040458	-	78	57237863	-	CJE1118	-	hypothetical protein
1083	 33.79	0	1040538..1040756	+	72	57237864	-	CJE1119	-	hypothetical protein
1084	 26.52	0	1040819..1040950	+	43	57237865	-	CJE1120	-	hypothetical protein
1085	 25.21	-1	1042357..1042590	-	77	57237866	-	CJE1122	-	hypothetical protein
1086	 21.18	-2	1042587..1042874	-	95	57237867	-	CJE1123	-	hypothetical protein
1087	 28.36	0	1043022..1043564	-	180	57237868	-	CJE1124	-	hypothetical protein
1088	 28.33	0	1043806..1043925	-	39	57237869	-	CJE1125	-	hypothetical protein
1089	 25.84	-1	1043942..1044208	-	88	57237870	-	CJE1126	-	hypothetical protein
1090	 23.89	-1	1044211..1044771	-	186	57237871	-	CJE1127	-	hypothetical protein
1091	 16.28	-2	1044811..1044939	-	42	57237872	-	CJE1128	-	hypothetical protein
1092	 33.33	0	1045351..1045557	-	68	57237873	-	CJE1129	-	hypothetical protein
1093	 25.64	-1	1045630..1046097	+	155	57237874	-	CJE1130	-	hypothetical protein
1094	 26.67	0	1046112..1046321	+	69	57237875	-	CJE1131	-	hypothetical protein
1095	 21.36	-2	1046363..1046788	+	141	57237876	-	CJE1132	-	hypothetical protein
1096	 27.81	0	1046785..1047834	+	349	57237877	-	CJE1133	-	hypothetical protein
1097	 23.46	-1	1047837..1048079	+	80	57237878	-	CJE1134	-	hypothetical protein
1098	 27.29	0	1048069..1049937	+	622	57237879	-	CJE1135	-	hypothetical protein
1099	 28.51	0	1049927..1050673	+	248	57237880	-	CJE1136	-	hypothetical protein
1100	 25.83	-1	1050718..1054650	+	1310	57237881	-	CJE1137	-	hypothetical protein
1101	 31.84	0	1054669..1055937	+	422	57237882	-	CJE1138	-	hypothetical protein
1102	 25.67	-1	1055941..1056840	-	299	57237883	-	CJE1139	-	hypothetical protein
1103	 25.56	-1	1057767..1059182	+	471	57237884	-	CJE1141	-	hypothetical protein
1104	 30.43	0	1059374..1060270	+	298	57237885	-	CJE1142	-	hypothetical protein
1105	 24.33	-1	1060350..1061093	+	247	57237886	-	CJE1143	-	hypothetical protein
1106	 24.76	-1	1061080..1061184	+	34	57237887	-	CJE1144	-	hypothetical protein
1107	 23.19	-1	1061185..1061529	+	114	57237888	-	CJE1145	-	hypothetical protein
1108	 23.49	-1	1061519..1062595	+	358	57237889	-	CJE1146	-	hypothetical protein
1109	 23.47	-1	1062598..1063611	+	337	57237890	-	CJE1147	-	hypothetical protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.