IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
954	 28.43	0	923468..924445	-	325	57237735	-	CJE0985	-	hypothetical protein
955	 23.14	-1	924602..925072	+	156	57237736	-	CJE0986	-	hypothetical protein
956	 27.62	0	925158..925577	+	139	57237737	-	CJE0987	-	hypothetical protein
957	 25.39	-1	925581..926033	+	150	57237738	-	CJE0988	-	hypothetical protein
958	 25.67	-1	926030..926590	+	186	57237739	-	CJE0989	-	SCO1/SenC family protein
959	 31.44	0	926597..927496	-	299	57237740	cysK	CJE0990	-	cysteine synthase A
960	 35.02	+1	927623..927919	-	98	57237741	hup	CJE0991	-	DNA-binding protein HU
961	 26.13	-1	928021..929853	-	610	57237742	ciaB	CJE0992	-	invasion antigen B
962	 35.75	+1	929915..930328	+	137	57237743	-	CJE0993	-	thioesterase family protein
963	 28.28	0	930368..930565	-	65	57237744	-	CJE0994	-	hypothetical protein
964	 35.46	+1	930546..932657	-	703	57237745	cstA	CJE0995	-	carbon starvation protein A
965	 35.16	+1	932824..933753	-	309	57237746	prsA	CJE0996	-	ribose-phosphate pyrophosphokinase
966	 28.33	0	933860..934519	-	219	57237747	-	CJE0997	-	amino acid ABC transporter, permease protein PEB1
967	 32.01	0	934530..935282	-	250	57237748	-	CJE0998	-	amino acid ABC transporter, permease protein PEB1
968	 31.03	0	935284..936063	-	259	57237749	pebA	CJE0999	-	bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein
969	 32.24	0	936085..936813	-	242	57237750	pebC	CJE1000	-	amino acid ABC transporter, ATP-binding protein PEB1
970	 26.49	0	936949..937737	-	262	57237751	cheR	CJE1001	-	chemotaxis protein methyltransferase CheR
971	 32.07	0	937753..938307	-	184	57237752	cheB	CJE1002	-	protein-glutamate methylesterase CheB
972	 31.96	0	938473..938910	+	145	57237753	rpiB	CJE1003	-	ribose 5-phosphate isomerase B
973	 26.43	0	938910..939242	+	110	57237754	-	CJE1004	-	hypothetical protein
974	 30.05	0	939239..939787	+	182	57237755	apt	CJE1005	-	adenine phosphoribosyltransferase
975	 29.82	0	939806..940402	+	198	57237756	-	CJE1006	-	DedA family protein
976	 31.96	0	940399..941850	+	483	57237757	-	CJE1007	-	leucyl aminopeptidase
977	 33.97	0	941847..942950	+	367	57237758	-	CJE1008	-	translation-associated GTPase
978	 30.73	0	942972..944354	-	460	57237759	argH	CJE1009	-	argininosuccinate lyase
979	 32.83	0	944364..945938	-	524	57237760	pckA	CJE1010	-	phosphoenolpyruvate carboxykinase
980	 32.67	0	945951..947750	-	599	57237761	-	CJE1011	-	oxaloacetate decarboxylase, alpha subunit, putative
981	 27.44	0	947782..949122	-	446	57237762	-	CJE1012	-	sodium transporter, putative
982	 30.49	0	949135..950469	-	444	57237763	-	CJE1013	-	sodium transporter, putative
983	 39.23	+2	950702..951040	+	112	57237764	atpE	CJE1014	-	F0F1 ATP synthase subunit C
984	 29.71	0	951358..952269	+	303	57237765	-	CJE1015	-	hypothetical protein
985	 29.97	0	952277..955789	-	1170	57237766	aas	CJE1016	-	2-acyl-glycerophospho-ethanolamine acyltransferase
986	 21.00	-2	955834..956214	-	126	57237767	-	CJE1017	-	hypothetical protein
987	 27.61	0	957015..957800	-	261	57237768	-	CJE1018	-	His/Glu/Gln/Arg/opine ABC transporter permease
988	 29.60	0	957823..959028	-	401	57237769	-	CJE1019	-	permease, putative
989	 33.10	0	959025..961613	-	862	57237770	secA	CJE1020	-	preprotein translocase subunit SecA
990	 26.86	0	961713..962222	+	169	161486705	lolA	CJE1021	-	outer-membrane lipoprotein carrier protein
991	 27.62	0	962219..962953	-	244	57237772	-	CJE1022	-	hypothetical protein
992	 26.34	0	962963..964306	-	447	57237773	-	CJE1023	-	hypothetical protein
993	 25.98	-1	964355..965701	+	448	57237774	-	CJE1024	-	putative lipoprotein
994	 33.10	0	965713..966585	-	290	57237775	-	CJE1025	-	carbon-nitrogen family hydrolase
995	 28.49	0	966582..967469	-	295	57237776	-	CJE1026	-	cation efflux family protein
996	 29.04	0	967466..968443	-	325	57237777	-	CJE1027	-	peptidyl-arginine deiminase family protein
997	 29.20	0	968542..968976	-	144	57237778	-	CJE1028	-	putative lipoprotein
998	 27.50	0	968992..969111	-	39	57237779	-	CJE1029	-	hypothetical protein
999	 31.84	0	969127..969660	-	177	57237780	-	CJE1030	-	methyl-accepting chemotaxis protein
1000	 33.86	0	970677..972209	-	510	57237781	purH	CJE1033	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1001	 29.58	0	972212..972850	-	212	57237782	-	CJE1034	-	DnaJ domain-containing protein
1002	 35.48	+1	972979..975165	-	728	57237783	purL	CJE1035	-	phosphoribosylformylglycinamidine synthase II
1003	 30.93	0	975176..976504	-	442	57237784	trmE	CJE1036	-	tRNA modification GTPase TrmE
1004	 30.65	0	976497..977315	-	272	57237785	-	CJE1037	-	hypothetical protein
1005	 31.07	0	977312..978904	-	530	57237786	-	CJE1038	-	putative inner membrane protein translocase component YidC
1006	 26.02	-1	978901..979242	-	113	57237787	-	CJE1039	-	hypothetical protein
1007	 28.13	0	979239..979565	-	108	57237788	rnpA	CJE1040	-	ribonuclease P protein component
1008	 40.74	+2	979562..979696	-	44	57237789	rpmH	CJE1041	-	50S ribosomal protein L34
1009	 25.21	-1	979827..980306	+	159	57237790	-	CJE1042	-	acetyltransferase
1010	 24.96	-1	980303..980911	+	202	57237791	-	CJE1043	-	hypothetical protein
1011	 29.22	0	980908..982098	+	396	57237792	-	CJE1044	-	hypothetical protein
1012	 26.40	0	982090..982464	-	124	57237793	-	CJE1045	-	thioesterase family protein
1013	 35.35	+1	982572..982670	-	32	57237794	-	CJE1046	-	hypothetical protein
1014	 23.26	-1	984859..984987	+	42	57237795	-	CJE1048	-	hypothetical protein
1015	 30.70	0	985084..985197	+	37	57237796	-	CJE1049	-	hypothetical protein
1016	 32.20	0	985215..985391	+	58	57237797	-	CJE1050	-	hypothetical protein
1017	 30.70	0	985388..985501	-	37	57237798	-	CJE1051	-	hypothetical protein
1018	 28.81	0	985554..986084	+	176	57237799	-	CJE1052	-	hypothetical protein
1019	 33.33	0	986086..986409	+	107	57237800	-	CJE1053	-	hypothetical protein
1020	 31.15	0	986550..986732	+	60	57237801	-	CJE1054	-	hypothetical protein
1021	 15.91	-2	986744..986875	-	43	57237802	-	CJE1055	-	hypothetical protein
1022	 30.02	0	988820..989695	+	291	57237803	-	CJE1058	-	methyltransferase, putative
1023	 35.92	+1	989768..990346	+	192	57237804	-	CJE1059	-	hypothetical protein
1024	 29.89	0	990347..990520	-	57	57237805	-	CJE1060	-	putative lipoprotein
1025	 27.08	0	990529..991056	-	175	57237806	-	CJE1061	-	thermonuclease family protein
1026	 33.25	0	991124..992392	+	422	57237807	pepD	CJE1062	-	aminoacyl-histidine dipeptidase
1027	 30.85	0	992375..993622	-	415	57237808	cjaB	CJE1063	-	transport protein CjaB
1028	 33.33	0	993663..994502	-	279	57237809	-	CJE1064	-	surface antigen, CjaA
1029	 27.61	0	994722..995840	+	372	57237810	jlpA	CJE1065	-	surface-exposed lipoprotein
1030	 27.26	0	995932..996672	+	246	57237811	-	CJE1066	-	hypothetical protein
1031	 33.07	0	996676..997827	-	383	57237812	hipO	CJE1067	-	hippurate hydrolase
1032	 29.25	0	997829..998440	-	203	57237813	-	CJE1068	-	hypothetical protein
1033	 19.47	-2	998544..998882	+	112	57237814	-	CJE1069	-	hypothetical protein
1034	 24.28	-1	998885..999646	-	253	57237815	-	CJE1070	-	hypothetical protein
1035	 30.73	0	999643..1000908	-	421	57237816	-	CJE1071	-	iron-sulfur cluster-binding domain-containing protein
1036	 30.60	0	1000910..1002265	-	451	57237817	hemN	CJE1072	-	coproporphyrinogen III oxidase
1037	 31.10	0	1002252..1002743	-	163	57237818	-	CJE1073	-	hypothetical protein
1038	 34.96	+1	1002740..1003660	-	306	57237819	argF	CJE1074	-	ornithine carbamoyltransferase
1039	 33.64	0	1003657..1004640	-	327	57237820	hemB	CJE1075	-	delta-aminolevulinic acid dehydratase
1040	 30.84	0	1004698..1005258	+	186	57237821	ribA	CJE1076	-	GTP cyclohydrolase II
1041	 25.40	-1	1005259..1005825	+	188	57237822	gidB	CJE1077	-	methyltransferase GidB
1042	 30.54	0	1005841..1006413	-	190	57237823	-	CJE1078	-	hypothetical protein
1043	 33.42	0	1006508..1007605	-	365	57237824	-	CJE1079	-	hypothetical protein
1044	 26.19	0	1007718..1008599	+	293	57237825	-	CJE1080	-	LysR family transcriptional regulator
1045	 30.77	0	1008679..1010547	+	622	57237826	rpoD	CJE1081	-	RNA polymerase sigma factor RpoD
1046	 27.68	0	1010563..1011075	-	170	57237827	sixA	CJE1082	-	phosphohistidine phosphatase SixA
1047	 26.40	0	1011072..1011590	-	172	57237828	-	CJE1083	-	rhomboid family protein
1048	 24.94	-1	1011689..1012105	+	138	57237829	-	CJE1084	-	hypothetical protein
1049	 29.25	0	1012113..1013729	-	538	57237830	-	CJE1085	-	cell division protein FtsH, putative
1050	 30.86	0	1013733..1014983	-	416	57237831	-	CJE1086	-	MiaB-like tRNA modifying enzyme
1051	 27.23	0	1014980..1016551	-	523	57237832	-	CJE1087	-	mechanosensitive ion channel family protein
1052	 28.60	0	1016548..1017603	-	351	57237833	aroB	CJE1088	-	3-dehydroquinate synthase
1053	 27.41	0	1017649..1019049	-	466	57237834	-	CJE1089	-	TrkA domain-containing protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.