IslandPathversion 1.0

IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.82 STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
811	 18.33	-2	814112..814231	+	39	154148110	-	CHAB381_0869	-	hypothetical protein
812	 37.41	+1	814396..814812	+	138	154149409	-	CHAB381_0870	-	nickel-responsive regulator
813	 38.50	+1	815087..815938	+	283	154148503	hypB	CHAB381_0871	-	hydrogenase accessory protein HypB
814	 33.33	0	815938..816231	+	97	154148697	-	CHAB381_0872	-	hydrogenase assembly chaperone HypC/HupF
815	 35.82	0	816215..817300	+	361	154149459	hypD	CHAB381_0873	-	hydrogenase expression/formation protein HypD
816	 25.95	-1	817310..818284	+	324	154149006	-	CHAB381_0874	-	hypothetical protein
817	 32.60	0	821419..821691	-	90	154148474	-	CHAB381_0877	-	putative mercuric ion binding protein
818	 27.98	0	821718..822464	-	248	154148771	-	CHAB381_0878	-	TonB family protein
819	 28.12	0	822457..822840	-	127	154148033	expD	CHAB381_0879	-	TonB system transport protein ExbD
820	 33.10	0	822837..823259	-	140	154148544	exbB	CHAB381_0880	-	TonB-system energizer ExbB
821	 35.98	0	823519..824691	+	390	154149501	hypE	CHAB381_0881	-	hydrogenase expression/formation protein HypE
822	 35.67	0	825010..826251	-	413	154148160	-	CHAB381_0882	-	serine transporter
823	 27.19	0	826209..826322	-	37	154148873	-	CHAB381_0883	-	hypothetical protein
824	 15.60	-2	826315..826455	+	46	154148954	-	CHAB381_0884	-	hypothetical protein
825	 22.22	-1	826694..826810	-	38	154148221	-	CHAB381_0885	-	hypothetical protein
826	 31.82	0	826788..827447	-	219	154148455	-	CHAB381_0886	-	putative LMP1
827	 17.46	-2	827755..827880	-	41	154149402	-	CHAB381_0887	-	hypothetical protein
828	 26.67	0	827964..828098	-	44	154149448	-	CHAB381_0888	-	hypothetical protein
829	 40.33	+1	828106..829020	-	304	154148723	cysK	CHAB381_0889	-	cysteine synthase A
830	 32.37	0	829030..829443	-	137	154148775	-	CHAB381_0890	-	BadM/Rrf2 family transcriptional regulator
831	 37.42	+1	829440..830711	-	423	154148136	-	CHAB381_0891	-	O-acetylhomoserine sulfhydrylase
832	 29.70	0	830962..831291	+	109	154149139	-	CHAB381_0892	-	hypothetical protein
833	 32.70	0	831288..831917	+	209	154148415	-	CHAB381_0893	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
834	 29.55	0	832076..832366	+	96	154149347	-	CHAB381_0894	-	hypothetical protein
835	 32.21	0	832369..833262	+	297	154148638	-	CHAB381_0895	-	bifunctional short chain isoprenyl diphosphate synthase
836	 34.81	0	833262..834551	+	429	154149210	hemA	CHAB381_0896	-	glutamyl-tRNA reductase
837	 36.61	0	834541..836250	+	569	154148423	proS	CHAB381_0897	-	prolyl-tRNA synthetase
838	 24.48	-1	836244..836627	+	127	154148867	-	CHAB381_0898	-	hypothetical protein
839	 36.89	0	836624..837550	+	308	154148130	hemC	CHAB381_0899	-	porphobilinogen deaminase
840	 18.30	-2	837551..837949	+	132	154148700	-	CHAB381_0900	-	valyl-tRNA synthetase
841	 35.27	0	838022..839830	+	602	154147956	-	CHAB381_0901	-	3-polyprenyl-4hydroxybenzoate decarboxylase
842	 25.76	-1	839850..839981	+	43	154148494	-	CHAB381_0902	-	hypothetical protein
843	 26.53	-1	840092..840238	-	48	154149423	-	CHAB381_0903	-	hypothetical protein
844	 22.46	-1	840211..840348	+	45	154148417	-	CHAB381_0904	-	hypothetical protein
845	 33.33	0	841007..842101	-	364	154149130	-	CHAB381_0905	-	competence/damage-inducible domain-containing protein
846	 35.07	0	842196..844961	+	921	154148579	ileS	CHAB381_0906	-	isoleucyl-tRNA synthetase
847	 37.53	+1	845052..846410	+	452	154149337	-	CHAB381_0907	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
848	 37.59	+1	846416..847873	+	485	154149366	guaB	CHAB381_0908	-	inositol-5-monophosphate dehydrogenase
849	 36.95	0	847873..848979	+	368	154148628	metX	CHAB381_0909	-	homoserine O-acetyltransferase
850	 28.86	0	848967..849167	+	66	154147917	-	CHAB381_0910	-	hypothetical protein
851	 30.07	0	849164..849991	+	275	154148858	-	CHAB381_0911	-	carbon-nitrogen family hydrolase
852	 23.47	-1	849995..850420	+	141	154149119	-	CHAB381_0912	-	hypothetical protein
853	 31.59	0	850514..850858	+	114	154147888	-	CHAB381_0913	-	hydrogenase expression/synthesis, HypA
854	 25.25	-1	851145..852431	+	428	154148424	-	CHAB381_0914	-	hypothetical protein
855	 33.54	0	852927..853406	-	159	154148909	-	CHAB381_0915	-	phosphohistidine phosphatase SixA
856	 30.50	0	853527..854339	-	270	154148227	-	CHAB381_0916	-	hypothetical protein
857	 31.65	0	854326..854859	-	177	154147965	-	CHAB381_0917	-	rhomboid family protein
858	 29.58	0	854869..855534	-	221	154148900	-	CHAB381_0918	-	hypothetical protein
859	 37.39	+1	855649..856905	+	418	154149368	murA	CHAB381_0919	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
860	 30.39	0	856902..858089	+	395	154148710	-	CHAB381_0920	-	molybdopterin biosynthesis enzyme
861	 35.53	0	858217..858762	+	181	154149405	-	CHAB381_0922	-	phenylacrylic acid decarboxylase (PAD)
862	 36.46	0	858759..859238	+	159	154148715	coaD	CHAB381_0923	-	phosphopantetheine adenylyltransferase
863	 29.76	0	859232..859819	+	195	154148244	tmk	CHAB381_0924	-	thymidylate kinase
864	 34.14	0	859816..861048	+	410	154148607	hisS	CHAB381_0925	-	histidyl-tRNA synthetase
865	 35.67	0	861045..862886	+	613	154148932	speA	CHAB381_0926	-	arginine decarboxylase
866	 38.10	+1	862891..863583	+	230	154148205	cysE	CHAB381_0927	-	serine O-acetyltransferase
867	 36.81	0	863628..864806	+	392	154148384	-	CHAB381_0928	-	aspartate aminotransferase
868	 28.83	0	864906..865127	+	73	154149271	-	CHAB381_0929	-	hypothetical protein
869	 29.66	0	865117..866178	+	353	154148359	-	CHAB381_0930	-	alpha/beta hydrolase fold
870	 28.54	0	866172..867611	+	479	154149379	-	CHAB381_0931	-	Mur ligase family protein
871	 37.90	+1	867622..868737	+	371	154148625	-	CHAB381_0932	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
872	 17.04	-2	869137..869271	+	44	154149370	-	CHAB381_0933	-	hypothetical protein
873	 28.44	0	869384..869608	-	74	154148027	-	CHAB381_0934	-	hypothetical protein
874	 30.87	0	869608..870621	-	337	154148857	-	CHAB381_0935	-	hypothetical protein
875	 34.54	0	870618..871031	-	137	154148684	-	CHAB381_0936	-	BadM/Rrf2 family transcriptional regulator
876	 33.33	0	871195..871467	+	90	154149212	rpsO	CHAB381_0937	-	ribosomal protein S15
877	 35.63	0	871570..874224	+	884	154147932	secA	CHAB381_0938	-	preprotein translocase subunit SecA
878	 37.45	+1	874429..875619	+	396	154148848	-	CHAB381_0939	-	lipoprotein release system transmembrane protein
879	 30.81	0	876211..877476	-	421	154148538	-	CHAB381_0940	-	NLP/P60
880	 31.32	0	877521..878858	+	445	154149488	-	CHAB381_0941	-	TPR domain-containing protein
881	 21.48	-1	879293..879427	-	44	154149512	-	CHAB381_0942	-	hypothetical protein
882	 36.48	0	879929..880819	-	296	154148876	-	CHAB381_0943	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
883	 35.37	0	880816..882237	-	473	154147935	-	CHAB381_0944	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
884	 15.79	-2	882300..882413	-	37	154149354	-	CHAB381_0945	-	hypothetical protein
885	 35.16	0	882434..883144	-	236	154148634	hisA	CHAB381_0946	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
886	 30.56	0	883144..883755	-	203	154149171	hisH	CHAB381_0947	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
887	 34.89	0	883749..884648	-	299	154149254	-	CHAB381_0948	-	general glycosylation pathway protein
888	 32.00	0	884642..886435	-	597	154148308	-	CHAB381_0949	-	general glycosylation pathway protein
889	 36.25	0	886432..887529	-	365	154149502	-	CHAB381_0950	-	putative perosamine synthetase
890	 40.14	+1	887590..888177	-	195	154148878	-	CHAB381_0951	-	general glycosylation pathway protein
891	 31.85	0	888164..888769	-	201	154149097	-	CHAB381_0952	-	general glycosylation pathway protein
892	 34.86	0	888762..889877	-	371	154148021	-	CHAB381_0953	-	galactosyltransferase
893	 32.47	0	889941..892130	-	729	154149323	-	CHAB381_0954	-	general glycosylation pathway protein
894	 32.89	0	892117..893235	-	372	154148421	-	CHAB381_0955	-	glycosyl transferase, group 1 family protein
895	 30.36	0	893232..894275	-	347	154147890	-	CHAB381_0956	-	general glycosylation pathway protein
896	 30.78	0	894272..895249	-	325	154149052	-	CHAB381_0957	-	ss-1,4-galactosyltransferase
897	 33.05	0	895233..896309	-	358	154148364	-	CHAB381_0958	-	general glycosylation pathway protein
898	 31.81	0	896306..897226	-	306	154149334	-	CHAB381_0959	-	Cps2I
899	 30.85	0	897223..898269	-	348	154148534	-	CHAB381_0960	-	putative WfaX
900	 32.68	0	898266..899489	-	407	154149462	-	CHAB381_0961	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
901	 32.88	0	899486..901021	-	511	154149085	-	CHAB381_0962	-	virulence factor MviN family protein
902	 29.82	0	901021..901476	-	151	154148231	-	CHAB381_0963	-	ecotin
903	 38.51	+1	901598..902524	+	308	154148387	pyrB	CHAB381_0964	-	aspartate carbamoyltransferase
904	 37.55	+1	902527..903807	+	426	154148442	-	CHAB381_0965	-	dihydroorotase (DHOase)
905	 20.37	-2	903909..904070	-	53	154148091	-	CHAB381_0966	-	hypothetical protein
906	 20.00	-2	904261..904530	-	89	154149032	-	CHAB381_0967	-	hypothetical protein
907	 32.26	0	904508..905806	+	432	154148830	glmU	CHAB381_0968	-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
908	 34.27	0	905803..906981	+	392	154148032	coaBC	CHAB381_0969	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
909	 33.63	0	906978..907658	+	226	154149378	uppS	CHAB381_0970	-	di-trans,poly-cis-decaprenylcistransferase
910	 33.33	0	907683..908444	+	253	154148659	-	CHAB381_0971	-	peptidase A24 N- domain-containing protein
31.82	MEAN

5.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.