IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.82   STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
33	 34.20	0	31652..32572	-	306	154149040	-	CHAB381_0033	-	auxin efflux carrier (AEC) family protein
34	 34.05	0	32839..33813	-	324	154147873	-	CHAB381_0034	-	putative transporter
35	 32.37	0	33806..34219	-	137	154148901	-	CHAB381_0035	-	putative periplasmic protein
36	 36.52	0	34540..35010	+	156	154148599	moaC	CHAB381_0036	-	molybdenum cofactor biosynthesis protein C
37	 29.59	0	34988..35254	+	88	154149521	-	CHAB381_0037	-	hypothetical protein
38	 29.21	0	35264..36475	+	403	154148408	-	CHAB381_0038	-	hypothetical protein
39	 34.27	0	36540..36752	+	70	154148128	rpsU	CHAB381_0039	-	30S ribosomal protein S21
40	 30.45	0	36847..37470	+	207	154148536	-	CHAB381_0040	-	hypothetical protein
41	 38.29	+1	37787..38371	+	194	154149253	folE	CHAB381_0041	-	GTP cyclohydrolase I
42	 40.97	+1	38443..39633	+	396	154148303	nifS	CHAB381_0042	-	NifS family cysteine desulfurase
43	 39.68	+1	39647..40639	+	330	154148924	-	CHAB381_0043	-	nitrogen fixation protein NifU
44	 28.95	0	41321..41434	-	37	154149259	-	CHAB381_0044	-	hypothetical protein
45	 36.55	0	41881..42813	+	310	154148917	-	CHAB381_0045	-	glycerate dehydrogenase
46	 33.49	0	43307..44581	+	424	154148911	-	CHAB381_0047	-	coproporphyrinogen III oxidase
47	 20.29	-2	44613..44750	-	45	154148429	-	CHAB381_0048	-	hypothetical protein
48	 22.39	-1	44926..45126	+	66	154148240	-	CHAB381_0049	-	hypothetical protein
49	 38.45	+1	45659..46636	-	325	154148301	trpS	CHAB381_0050	-	tryptophanyl-tRNA synthetase
50	 30.16	0	46648..47151	-	167	154149247	-	CHAB381_0051	-	hypothetical protein
51	 32.16	0	47155..47667	-	170	154148531	aroK	CHAB381_0052	-	shikimate kinase
52	 35.43	0	47657..49039	-	460	154149467	-	CHAB381_0053	-	GTP-binding protein EngA
53	 34.68	0	49139..50032	+	297	154148280	-	CHAB381_0054	-	integral membrane protein
54	 40.20	+1	50042..50857	+	271	154148818	kdsA	CHAB381_0055	-	2-dehydro-3-deoxyphosphooctonate aldolase
55	 36.70	0	50992..51258	+	88	154149305	-	CHAB381_0056	-	cytosine-specific methyltransferase NlaX (M.NlaX)
56	 37.62	+1	53815..55026	-	403	154148609	lys1	CHAB381_0061	-	saccharopine dehydrogenase
57	 30.40	0	59435..60526	-	363	154148129	-	CHAB381_0063	-	hypothetical protein
58	 28.22	0	60529..61584	-	351	154147883	-	CHAB381_0064	-	modification methylase EcoRI (adenine-specificmethyltransferase EcoRI) (M.EcoRI)
59	 27.12	0	61595..62689	-	364	154148820	-	CHAB381_0065	-	modification methylase EcoRI (adenine-specificmethyltransferase EcoRI) (M.EcoRI)
60	 32.08	0	63206..63841	+	211	154148044	-	CHAB381_0066	-	hypothetical protein
61	 28.72	0	63950..64621	+	223	154149506	-	CHAB381_0067	-	hypothetical protein
62	 23.40	-1	64738..64878	+	46	154149451	-	CHAB381_0068	-	transposase
63	 25.45	-1	65290..65454	+	54	154148332	-	CHAB381_0069	-	ComE operon protein 1
64	 21.97	-1	65672..65803	-	43	154148412	-	CHAB381_0070	-	hypothetical protein
65	 38.39	+1	66054..68882	-	942	154148692	uvrA	CHAB381_0072	-	excinuclease ABC subunit A
66	 32.14	0	69049..69549	+	166	154149170	-	CHAB381_0073	-	hypothetical protein
67	 30.84	0	69537..70697	+	386	154148346	-	CHAB381_0074	-	hypothetical protein
68	 34.90	0	70699..71337	+	212	154149480	-	CHAB381_0075	-	3-oxoacyl-[acyl-carrier protein] reductase
69	 25.00	-1	71354..71521	+	55	154148564	-	CHAB381_0076	-	hypothetical protein
70	 18.14	-2	75181..75417	+	78	154147977	-	CHAB381_0079	-	hypothetical protein
71	 35.25	0	75446..76747	-	433	154149098	-	CHAB381_0080	-	putative aminotransferase
72	 28.57	0	76759..77682	+	307	154147961	-	CHAB381_0081	-	ATPase
73	 25.79	-1	77849..78007	-	52	154148984	-	CHAB381_0082	-	hypothetical protein
74	 42.31	+2	78002..78313	+	103	154148252	rpsJ	CHAB381_0083	-	30S ribosomal protein S10
75	 36.81	0	78324..78899	+	191	154148794	rplC	CHAB381_0084	-	50S ribosomal protein L3
76	 35.12	0	78896..79510	+	204	154148894	rplD	CHAB381_0085	-	50S ribosomal protein L4
77	 34.40	0	79512..79793	+	93	154148877	rplW	CHAB381_0086	-	50S ribosomal protein L23
78	 37.67	+1	79795..80625	+	276	154147959	rplB	CHAB381_0087	-	50S ribosomal protein L2
79	 32.62	0	80625..80906	+	93	154149120	rpsS	CHAB381_0088	-	30S ribosomal protein S19
80	 36.97	0	80916..81245	+	109	154149283	rplV	CHAB381_0089	-	50S ribosomal protein L22
81	 35.34	0	81248..81943	+	231	154149468	rpsC	CHAB381_0090	-	30S ribosomal protein S3
82	 36.62	0	81946..82371	+	141	154148600	rplP	CHAB381_0091	-	50S ribosomal protein L16
83	 26.88	0	82358..82543	+	61	154149231	rpmC	CHAB381_0092	-	50S ribosomal protein L29
84	 32.94	0	82554..82805	+	83	154148095	rpsQ	CHAB381_0093	-	30S ribosomal protein S17
85	 38.75	+1	82805..83173	+	122	154148791	rplN	CHAB381_0094	-	50S ribosomal protein L14
86	 30.74	0	83173..83403	+	76	154148233	rplX	CHAB381_0095	-	50S ribosomal protein L24
87	 31.32	0	83407..83952	+	181	154148087	-	CHAB381_0096	-	50S ribosomal protein L5
88	 38.17	+1	83954..84139	+	61	154149067	rpsN	CHAB381_0097	-	ribosomal protein S14p/S29e
89	 32.58	0	84149..84544	+	131	154149530	rpsH	CHAB381_0098	-	30S ribosomal protein S8
90	 34.26	0	84620..85156	+	178	154148630	-	CHAB381_0099	-	50S ribosomal protein L6
91	 31.09	0	85166..85522	+	118	154148292	rplR	CHAB381_0100	-	50S ribosomal protein L18
92	 31.97	0	85532..85972	+	146	154148935	rpsE	CHAB381_0101	-	30S ribosomal protein S5
93	 36.32	0	85983..86384	+	133	154148588	rplO	CHAB381_0102	-	50S ribosomal protein L15
94	 33.49	0	86384..87649	+	421	154149113	-	CHAB381_0103	-	preprotein translocase subunit SecY
95	 34.78	0	87649..88407	+	252	154148348	map	CHAB381_0104	-	methionine aminopeptidase
96	 37.55	+1	88404..88877	+	157	154149511	ybaK	CHAB381_0105	-	YbaK/ebsC protein
97	 31.72	0	88904..89521	+	205	154148799	-	CHAB381_0106	-	putative methyl transferase
98	 30.40	0	89982..90800	-	272	154149336	dapF	CHAB381_0107	-	diaminopimelate epimerase
99	 26.57	-1	90775..91380	-	201	154148632	coaE	CHAB381_0108	-	dephospho-CoA kinase
100	 37.70	+1	91454..92437	+	327	154148180	purM	CHAB381_0109	-	phosphoribosylaminoimidazole synthetase
101	 33.09	0	92494..93321	-	275	154149306	-	CHAB381_0110	-	putative periplasmic protein
102	 35.78	0	93406..94794	+	462	154147872	gltX	CHAB381_0111	-	glutamyl-tRNA synthetase
103	 36.94	0	94791..96038	+	415	154149335	-	CHAB381_0112	-	NADP-dependent malic enzyme (NADP-me)
104	 36.34	0	96035..97465	+	476	154148015	pncB	CHAB381_0113	-	putative nicotinate phosphoribosyltransferase
105	 37.24	+1	97753..98853	+	366	154148765	aroC	CHAB381_0114	-	chorismate synthase
106	 36.76	0	98918..99325	+	135	154148930	-	CHAB381_0115	-	N-terminal methylation domain-containing protein
107	 34.02	0	99360..99794	-	144	154148389	moaE	CHAB381_0116	-	molybdopterin converting factor, subunit 2
108	 30.18	0	99796..100017	-	73	154148751	-	CHAB381_0117	-	hypothetical protein
109	 36.59	0	100090..101316	+	408	154148229	nspC	CHAB381_0118	-	carboxynorspermidine decarboxylase
110	 25.88	-1	101471..101698	+	75	154148563	-	CHAB381_0119	-	hypothetical protein
111	 36.54	0	101881..102879	-	332	154148017	-	CHAB381_0120	-	O-sialoglycoprotein endopeptidase
112	 35.65	0	102876..103955	-	359	154148397	dxr	CHAB381_0121	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
113	 36.22	0	103949..104710	-	253	154148963	cdsA	CHAB381_0122	-	phosphatidate cytidylyltransferase
114	 29.07	0	104752..106065	-	437	154147985	-	CHAB381_0123	-	fibronectin/fibrinogen-binding protein
115	 39.44	+1	106123..107382	+	419	154148626	leuC	CHAB381_0124	-	3-isopropylmalate dehydratase large subunit
116	 32.07	0	107385..107939	+	184	154148621	-	CHAB381_0125	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
117	 34.37	0	107936..108904	+	322	154149331	-	CHAB381_0126	-	phospholipase A
118	 18.25	-2	108954..109079	-	41	154148375	-	CHAB381_0127	-	hypothetical protein
119	 31.75	0	109353..109478	-	41	154149135	-	CHAB381_0128	-	hypothetical protein
120	 37.99	+1	109824..111497	-	557	154148861	nrfA	CHAB381_0129	-	nitrite reductase (cytochrome; ammonia-forming)
121	 39.04	+1	111515..112057	-	180	154147870	nrfH	CHAB381_0130	-	cytochrome c nitrate reductase, small subunit
122	 32.42	0	112187..113275	-	362	154148617	ribD	CHAB381_0131	-	riboflavin biosynthesis protein RibD
123	 37.39	+1	113359..113925	-	188	154148096	efp	CHAB381_0132	-	elongation factor P
124	 34.92	0	113975..115549	-	524	154148993	recJ	CHAB381_0133	-	single-stranded-DNA-specific exonuclease RecJ
125	 36.35	0	115539..117164	-	541	154149163	pyrG	CHAB381_0134	-	CTP synthetase
126	 31.35	0	117385..118542	-	385	154149149	-	CHAB381_0135	-	bacteriophage-related integrase
127	 31.53	0	121315..122310	+	331	154148072	-	CHAB381_0138	-	hypothetical protein
128	 31.89	0	122323..122739	+	138	154147996	-	CHAB381_0139	-	single-strand binding protein family
129	 23.08	-1	122739..122972	+	77	154148758	-	CHAB381_0140	-	troponin C
130	 33.05	0	122969..123673	+	234	154149261	-	CHAB381_0141	-	TrbM protein
131	 26.72	0	123681..124028	+	115	154149079	-	CHAB381_0142	-	germination-specific N-acetylmuramoyl-L-alanine amidase
132	 27.37	0	124032..125858	+	608	154147960	-	CHAB381_0143	-	hypothetical protein
31.82	MEAN

5.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.