IslandPathversion 1.0

IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.82 STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
699	 36.80	0	688789..689451	+	220	154149359	-	CHAB381_0744	-	ExsB protein
700	 35.12	0	689552..690223	+	223	154148743	-	CHAB381_0745	-	two-component regulator
701	 31.22	0	690337..691473	+	378	154148063	-	CHAB381_0746	-	histidine kinase
702	 41.77	+1	691868..692116	+	82	154148996	-	CHAB381_0747	-	ferredoxin
703	 33.75	0	692116..693564	+	482	154148239	-	CHAB381_0748	-	phosphatase
704	 18.13	-2	693862..694203	-	113	154148366	-	CHAB381_0749	-	putative sulfatase
705	 35.00	0	694348..694827	-	159	154149380	-	CHAB381_0750	-	flavodoxin
706	 27.07	0	695358..695756	-	132	154148865	-	CHAB381_0751	-	hypothetical protein
707	 24.40	-1	695915..698074	-	719	154148780	-	CHAB381_0752	-	hypothetical protein
708	 25.40	-1	698229..698417	-	62	154148777	-	CHAB381_0753	-	hypothetical protein
709	 24.87	-1	698779..700101	-	440	154148007	-	CHAB381_0754	-	hypothetical protein
710	 27.56	0	700061..700528	-	155	154148558	-	CHAB381_0755	-	seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS)
711	 24.20	-1	700598..701287	-	229	154149527	-	CHAB381_0756	-	hypothetical protein
712	 31.29	0	701312..701752	-	146	154149330	-	CHAB381_0757	-	hypothetical protein
713	 27.16	0	701813..701974	-	53	154148141	-	CHAB381_0758	-	galactosyltransferase
714	 30.12	0	702377..703402	-	341	154148191	-	CHAB381_0760	-	general glycosylation pathway protein
715	 23.40	-1	703438..703578	+	46	154148278	-	CHAB381_0761	-	hypothetical protein
716	 24.19	-1	703813..704895	-	360	154148807	-	CHAB381_0762	-	integrase phage family protein
717	 33.86	0	705278..706606	+	442	154148567	selA	CHAB381_0765	-	L-seryl-tRNA selenium transferase
718	 32.40	0	706599..708416	+	605	154148887	selB	CHAB381_0766	-	selenocysteine-specific translation elongation factor
719	 36.63	0	708535..710325	-	596	154149490	lepA	CHAB381_0767	-	GTP-binding protein LepA
720	 33.97	0	710381..711169	-	262	154148582	-	CHAB381_0768	-	DNA polymerase III subunit epsilon
721	 35.67	0	711179..711820	-	213	154149308	rpe	CHAB381_0769	-	ribulose-phosphate 3-epimerase
722	 38.02	+1	711950..712141	+	63	154148353	rpmB	CHAB381_0770	-	ribosomal protein L28
723	 34.57	0	712160..713290	+	376	154148168	-	CHAB381_0771	-	hypothetical protein
724	 35.11	0	713283..714464	+	393	154149060	argJ	CHAB381_0772	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
725	 36.87	0	714890..715426	-	178	154147871	-	CHAB381_0773	-	hexapaptide repeat-containing transferase
726	 28.16	0	715520..717202	+	560	154148837	-	CHAB381_0774	-	putative membrane-associated, metal-dependent hydrolase
727	 33.11	0	717242..718606	-	454	154148318	-	CHAB381_0775	-	sodium-dependent transporter
728	 30.97	0	718754..719641	-	295	154149188	-	CHAB381_0776	-	putative nicotinate (nicotinamide) nucleotide adenylyltransferase
729	 37.75	+1	719707..720702	+	331	154148155	gap	CHAB381_0777	-	glyceraldehyde-3-phosphate dehydrogenase, type I
730	 38.92	+1	720718..721935	+	405	154148947	pgk	CHAB381_0778	-	phosphoglycerate kinase
731	 34.62	0	721935..722633	+	232	154148733	tpiA	CHAB381_0779	-	triosephosphate isomerase
732	 39.78	+1	722630..723451	+	273	154148152	-	CHAB381_0780	-	enoyl-(acyl carrier protein) reductase
733	 31.83	0	723448..724380	+	310	154148480	-	CHAB381_0781	-	polysaccharide biosynthesis protein
734	 31.28	0	724367..725194	+	275	154148219	-	CHAB381_0782	-	DNA ligase
735	 36.46	0	725214..726203	+	329	154148706	galE	CHAB381_0783	-	UDP-glucose 4-epimerase
736	 17.89	-2	726754..726876	-	40	154149437	-	CHAB381_0784	-	hypothetical protein
737	 40.10	+1	727067..727258	-	63	154148003	-	CHAB381_0785	-	hypothetical protein
738	 24.37	-1	727255..727689	-	144	154148747	-	CHAB381_0786	-	putative DNA double-strand break repair Rad50 ATPase
739	 26.47	-1	727679..729646	-	655	154148056	-	CHAB381_0787	-	dynamin family protein
740	 24.68	-1	731460..732638	-	392	154148243	-	CHAB381_0789	-	hypothetical protein
741	 22.67	-1	734206..734355	+	49	154148875	-	CHAB381_0792	-	hypothetical protein
742	 31.41	0	734978..735394	-	138	154147927	-	CHAB381_0793	-	Plp4
743	 36.48	0	735450..740000	-	1516	154149537	-	CHAB381_0794	-	outer membrane protein
744	 43.19	+2	739219..739827	+	202	154148576	-	CHAB381_0795	-	putative DNA-directed RNA polymerase II, large subunit
745	 37.96	+1	740597..740920	-	107	154149063	-	CHAB381_0798	-	DNA-binding protein HU 1 (DNA-binding protein II) (HB)
746	 25.07	-1	741072..741809	-	245	154148186	-	CHAB381_0799	-	hypothetical protein
747	 36.31	0	742033..743475	+	480	154148914	-	CHAB381_0801	-	acetyl-CoA carboxylase
748	 27.57	0	743475..743717	+	80	154148591	-	CHAB381_0802	-	hypothetical protein
749	 27.64	0	743736..744824	+	362	154148090	-	CHAB381_0803	-	hypothetical protein
750	 32.61	0	745637..746875	+	412	154149233	nhaA	CHAB381_0804	-	Na+/H+ antiporter NhaA
751	 15.87	-2	747134..747322	-	62	154148670	-	CHAB381_0805	-	hypothetical protein
752	 36.48	0	747778..748158	+	126	154149364	recG	CHAB381_0807	-	ATP-dependent DNA helicase RecG
753	 18.25	-2	748245..748370	-	41	154148916	-	CHAB381_0808	-	hypothetical protein
754	 39.83	+1	748379..749809	-	476	154147951	-	CHAB381_0809	-	NadC family protein
755	 31.99	0	750269..751531	-	420	154149047	-	CHAB381_0810	-	aminoacyl-histidine dipeptidase
756	 34.50	0	751586..752443	+	285	154148082	-	CHAB381_0811	-	hypothetical protein
757	 12.82	-2	752470..752625	+	51	154149374	-	CHAB381_0812	-	hypothetical protein
758	 31.74	0	752920..753735	+	271	154148689	-	CHAB381_0813	-	polar amino acid ABC uptake transporter substrate binding protein
759	 23.16	-1	753923..754099	-	58	154149404	-	CHAB381_0814	-	hypothetical protein
760	 26.02	-1	754376..754498	-	40	154148371	-	CHAB381_0815	-	hypothetical protein
761	 29.87	0	755344..755718	-	124	154148568	-	CHAB381_0817	-	hypothetical protein
762	 33.55	0	755721..756653	-	310	154148181	mraW	CHAB381_0818	-	S-adenosyl-methyltransferase MraW
763	 28.07	0	756718..757287	+	189	154148977	-	CHAB381_0819	-	hypothetical protein
764	 29.78	0	757422..758885	+	487	154148500	-	CHAB381_0820	-	putative peptidyl-prolyl cis-trans isomerase D-like protein
765	 34.44	0	758878..760227	+	449	154149208	ftsA	CHAB381_0821	-	cell division protein FtsA
766	 38.15	+1	760239..761381	+	380	154148476	ftsZ	CHAB381_0822	-	cell division protein FtsZ
767	 27.55	0	761430..761948	+	172	154149230	-	CHAB381_0823	-	putative nitroimidazole resistance protein
768	 34.86	0	762008..763186	+	392	154148052	-	CHAB381_0824	-	recombination factor protein RarA
769	 30.08	0	763263..763877	+	204	154148572	-	CHAB381_0825	-	G:T/U mismatch-specific DNA glycosylase
770	 28.79	0	765079..765717	-	212	154148804	-	CHAB381_0827	-	hypothetical protein
771	 31.94	0	767170..768897	-	575	154149500	-	CHAB381_0829	-	hypothetical protein
772	 35.91	0	768901..770721	-	606	154149127	glmS	CHAB381_0830	-	D-fructose-6-phosphate amidotransferase
773	 24.68	-1	770811..771203	-	130	154149194	-	CHAB381_0831	-	hypothetical protein
774	 36.72	0	771269..772330	+	353	154148036	-	CHAB381_0832	-	hypothetical protein
775	 34.23	0	772330..772776	+	148	154148773	-	CHAB381_0833	-	phosphoribosyltransferase
776	 34.20	0	772776..773933	+	385	154149505	-	CHAB381_0834	-	major facilitator transporter
777	 27.49	0	773908..775122	+	404	154148550	-	CHAB381_0835	-	putative integral membrane protein
778	 35.62	0	775146..775844	+	232	154148250	-	CHAB381_0837	-	N- methylation
779	 29.33	0	775841..776389	-	182	154149265	-	CHAB381_0836	-	acetyltransferase
780	 33.49	0	776581..777225	-	214	154148688	-	CHAB381_0838	-	lipoprotein-releasing system ATP-binding protein LolD
781	 34.47	0	777228..778286	-	352	154147926	tsf	CHAB381_0839	-	elongation factor Ts
782	 34.58	0	778286..779089	-	267	154148854	rpsB	CHAB381_0840	-	30S ribosomal protein S2
783	 32.66	0	779237..780277	-	346	154147983	-	CHAB381_0841	-	hypothetical protein
784	 33.02	0	780356..781324	-	322	154149322	-	CHAB381_0842	-	peptidyl-arginine deiminase family protein
785	 29.99	0	781321..782067	-	248	154148369	-	CHAB381_0843	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
786	 30.59	0	782079..783353	-	424	154148232	-	CHAB381_0844	-	putative periplasmic protein
787	 33.18	0	783347..784015	-	222	154149141	purQ	CHAB381_0845	-	phosphoribosylformylglycinamidine synthase subunit I
788	 35.02	0	784012..784248	-	78	154147940	purS	CHAB381_0846	-	phosphoribosylformylglycinamidine synthase, PurS protein
789	 32.22	0	784259..784978	-	239	154148519	purC	CHAB381_0847	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
790	 34.44	0	785003..786262	-	419	154149250	-	CHAB381_0848	-	carboxy--processing protease (C-terminal-processing protease)
791	 34.61	0	786442..789018	+	858	154148486	-	CHAB381_0849	-	chaperone ClpB
792	 29.14	0	789171..789599	-	142	154149094	-	CHAB381_0850	-	hypothetical protein
793	 33.56	0	789592..790470	-	292	154148183	rarD	CHAB381_0851	-	RarD protein
794	 35.77	0	790582..791937	+	451	154148948	-	CHAB381_0852	-	3-deoxy-7-phosphoheptulonate synthase
795	 33.91	0	791938..792807	+	289	154147943	-	CHAB381_0853	-	fumarylacetoacetate hydrolase family protein
796	 31.55	0	792812..793372	+	186	154148674	-	CHAB381_0854	-	hypothetical protein
797	 31.67	0	793369..794208	+	279	154149140	lgt	CHAB381_0855	-	prolipoprotein diacylglyceryl transferase
798	 33.77	0	794265..794945	+	226	154148612	-	CHAB381_0856	-	fumarate reductase respiratory complex, transmembrane subunit
31.82	MEAN

5.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.