IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.82   STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
644	 37.88	+1	629571..631088	+	505	154149226	atpA	CHAB381_0685	-	F0F1 ATP synthase subunit alpha
645	 30.86	0	631098..631988	+	296	154148712	atpG	CHAB381_0686	-	F0F1 ATP synthase subunit gamma
646	 37.77	+1	631999..633396	+	465	154148258	atpD	CHAB381_0687	-	F0F1 ATP synthase subunit beta
647	 34.86	0	633409..633801	+	130	154149016	atpC	CHAB381_0688	-	F0F1 ATP synthase subunit epsilon
648	 34.20	0	633802..634380	+	192	154149487	-	CHAB381_0689	-	ExbB\TolQ family transport protein
649	 32.58	0	634380..634778	+	132	154148539	-	CHAB381_0690	-	ExbD\TolR family transport protein
650	 30.80	0	634783..635649	+	288	154149245	-	CHAB381_0691	-	putative periplasmic protein
651	 32.38	0	635659..636912	+	417	154148092	-	CHAB381_0692	-	translocation protein TolB
652	 35.70	0	636978..637442	+	154	154149070	-	CHAB381_0693	-	Omp18
653	 32.36	0	637444..638262	+	272	154147891	-	CHAB381_0694	-	TPR repeat-containing protein
654	 24.96	-1	638442..639707	-	421	154148076	-	CHAB381_0695	-	hypothetical protein
655	 39.57	+1	640018..640578	+	186	154148701	-	CHAB381_0696	-	fkbp-type peptidyl-prolyl cis-trans isomerase slyd (PPIase) (rotamase)
656	 35.91	0	640582..641511	+	309	154149227	fabD	CHAB381_0697	-	malonyl CoA-acyl carrier protein transacylase
657	 38.30	+1	641508..642191	+	227	154148467	mtnN	CHAB381_0698	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
658	 35.79	0	642188..642919	+	243	154148598	-	CHAB381_0699	-	PP-loop family protein
659	 34.88	0	643219..645159	+	646	154149342	-	CHAB381_0700	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
660	 36.67	0	645170..646486	+	438	154149232	-	CHAB381_0701	-	putative Na+/solute symporter
661	 33.81	0	646461..647294	+	277	154148504	-	CHAB381_0702	-	thiamine monophosphate kinase
662	 26.44	-1	647427..647861	+	144	154148127	-	CHAB381_0703	-	type III restriction-modification system: methylase
663	 34.54	0	648598..649344	-	248	154149073	-	CHAB381_0704	-	pseudouridine synthase
664	 32.89	0	649328..650467	-	379	154148795	-	CHAB381_0705	-	3-deoxy-D-manno-octulosonic-acid transferase
665	 32.62	0	650467..651171	-	234	154148691	-	CHAB381_0706	-	hypothetical protein
666	 32.51	0	651181..651909	-	242	154149251	-	CHAB381_0707	-	hypothetical protein
667	 39.07	+1	651922..652827	-	301	154148297	glyQ	CHAB381_0708	-	glycyl-tRNA synthetase subunit alpha
668	 35.47	0	653073..654995	-	640	154148722	-	CHAB381_0710	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
669	 35.08	0	655073..656047	+	324	154149393	bioB	CHAB381_0711	-	biotin synthase
670	 33.50	0	656040..656654	+	204	154147971	ribE	CHAB381_0712	-	riboflavin synthase subunit alpha
671	 31.46	0	656618..657364	+	248	154149093	-	CHAB381_0713	-	hypothetical protein
672	 23.08	-1	657554..657670	+	38	154148220	-	CHAB381_0714	-	hypothetical protein
673	 33.65	0	657747..659621	-	624	154148465	-	CHAB381_0715	-	RNA polymerase sigma factor RpoD
674	 35.70	0	659755..660387	+	210	154149244	-	CHAB381_0716	-	hypothetical protein
675	 35.40	0	660384..661544	+	386	154148678	-	CHAB381_0717	-	acetylornithine aminotransferase
676	 30.21	0	661534..662493	+	319	154149401	-	CHAB381_0718	-	hypothetical protein
677	 30.36	0	662495..662830	+	111	154147946	-	CHAB381_0719	-	hypothetical protein
678	 35.74	0	662823..663404	+	193	154149090	-	CHAB381_0720	-	putative methyltransferase
679	 32.81	0	663401..664165	+	254	154148289	-	CHAB381_0721	-	hypothetical protein
680	 36.34	0	664179..664943	+	254	154148852	-	CHAB381_0722	-	inner membrane protein YfcA
681	 34.93	0	665010..665696	+	228	154148073	atpB	CHAB381_0723	-	F0F1 ATP synthase subunit A
682	 28.80	0	665746..666252	-	168	154148615	-	CHAB381_0724	-	outer-membrane lipoprotein carrier protein
683	 24.69	-1	666300..666704	-	134	154149161	-	CHAB381_0725	-	hypothetical protein
684	 30.11	0	666713..667705	-	330	154148410	-	CHAB381_0726	-	hypothetical protein
685	 35.47	0	667706..669622	-	638	154149034	metG	CHAB381_0727	-	methionyl-tRNA synthetase
686	 31.88	0	669632..669838	-	68	154148134	-	CHAB381_0728	-	hypothetical protein
687	 35.11	0	669831..670673	-	280	154148004	fbp	CHAB381_0729	-	fructose-1,6-bisphosphatase
688	 32.70	0	670714..671190	-	158	154149071	mobB	CHAB381_0730	-	molybdopterin-guanine dinucleotide biosynthesis protein B
689	 30.92	0	671285..671782	+	165	154149544	-	CHAB381_0731	-	putative lipoprotein
690	 34.41	0	671897..672637	-	246	154148822	-	CHAB381_0732	-	putative secreted protein
691	 14.89	-2	672850..672990	+	46	154149054	-	CHAB381_0733	-	hypothetical protein
692	 35.09	0	673684..674481	+	265	154149309	panB	CHAB381_0735	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
693	 30.70	0	674580..675263	+	227	154148372	-	CHAB381_0736	-	beta-lactamase HcpA
694	 36.75	0	675269..676291	+	340	154148614	ruvB	CHAB381_0737	-	Holliday junction DNA helicase B
695	 31.44	0	676278..677336	+	352	154149249	-	CHAB381_0738	-	acid membrane antigen A
696	 33.12	0	677477..686509	+	3010	154148132	-	CHAB381_0739	-	hypothetical protein
697	 15.08	-2	686700..686951	-	83	154148839	-	CHAB381_0740	-	ATPase subunit 6
698	 31.18	0	688306..688722	-	138	154148178	-	CHAB381_0743	-	putative metalloprotease
699	 36.80	0	688789..689451	+	220	154149359	-	CHAB381_0744	-	ExsB protein
700	 35.12	0	689552..690223	+	223	154148743	-	CHAB381_0745	-	two-component regulator
701	 31.22	0	690337..691473	+	378	154148063	-	CHAB381_0746	-	histidine kinase
702	 41.77	+1	691868..692116	+	82	154148996	-	CHAB381_0747	-	ferredoxin
703	 33.75	0	692116..693564	+	482	154148239	-	CHAB381_0748	-	phosphatase
704	 18.13	-2	693862..694203	-	113	154148366	-	CHAB381_0749	-	putative sulfatase
705	 35.00	0	694348..694827	-	159	154149380	-	CHAB381_0750	-	flavodoxin
706	 27.07	0	695358..695756	-	132	154148865	-	CHAB381_0751	-	hypothetical protein
707	 24.40	-1	695915..698074	-	719	154148780	-	CHAB381_0752	-	hypothetical protein
708	 25.40	-1	698229..698417	-	62	154148777	-	CHAB381_0753	-	hypothetical protein
709	 24.87	-1	698779..700101	-	440	154148007	-	CHAB381_0754	-	hypothetical protein
710	 27.56	0	700061..700528	-	155	154148558	-	CHAB381_0755	-	seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS)
711	 24.20	-1	700598..701287	-	229	154149527	-	CHAB381_0756	-	hypothetical protein
712	 31.29	0	701312..701752	-	146	154149330	-	CHAB381_0757	-	hypothetical protein
713	 27.16	0	701813..701974	-	53	154148141	-	CHAB381_0758	-	galactosyltransferase
714	 30.12	0	702377..703402	-	341	154148191	-	CHAB381_0760	-	general glycosylation pathway protein
715	 23.40	-1	703438..703578	+	46	154148278	-	CHAB381_0761	-	hypothetical protein
716	 24.19	-1	703813..704895	-	360	154148807	-	CHAB381_0762	-	integrase phage family protein
717	 33.86	0	705278..706606	+	442	154148567	selA	CHAB381_0765	-	L-seryl-tRNA selenium transferase
718	 32.40	0	706599..708416	+	605	154148887	selB	CHAB381_0766	-	selenocysteine-specific translation elongation factor
719	 36.63	0	708535..710325	-	596	154149490	lepA	CHAB381_0767	-	GTP-binding protein LepA
720	 33.97	0	710381..711169	-	262	154148582	-	CHAB381_0768	-	DNA polymerase III subunit epsilon
721	 35.67	0	711179..711820	-	213	154149308	rpe	CHAB381_0769	-	ribulose-phosphate 3-epimerase
722	 38.02	+1	711950..712141	+	63	154148353	rpmB	CHAB381_0770	-	ribosomal protein L28
723	 34.57	0	712160..713290	+	376	154148168	-	CHAB381_0771	-	hypothetical protein
724	 35.11	0	713283..714464	+	393	154149060	argJ	CHAB381_0772	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
725	 36.87	0	714890..715426	-	178	154147871	-	CHAB381_0773	-	hexapaptide repeat-containing transferase
726	 28.16	0	715520..717202	+	560	154148837	-	CHAB381_0774	-	putative membrane-associated, metal-dependent hydrolase
727	 33.11	0	717242..718606	-	454	154148318	-	CHAB381_0775	-	sodium-dependent transporter
728	 30.97	0	718754..719641	-	295	154149188	-	CHAB381_0776	-	putative nicotinate (nicotinamide) nucleotide adenylyltransferase
729	 37.75	+1	719707..720702	+	331	154148155	gap	CHAB381_0777	-	glyceraldehyde-3-phosphate dehydrogenase, type I
730	 38.92	+1	720718..721935	+	405	154148947	pgk	CHAB381_0778	-	phosphoglycerate kinase
731	 34.62	0	721935..722633	+	232	154148733	tpiA	CHAB381_0779	-	triosephosphate isomerase
732	 39.78	+1	722630..723451	+	273	154148152	-	CHAB381_0780	-	enoyl-(acyl carrier protein) reductase
733	 31.83	0	723448..724380	+	310	154148480	-	CHAB381_0781	-	polysaccharide biosynthesis protein
734	 31.28	0	724367..725194	+	275	154148219	-	CHAB381_0782	-	DNA ligase
735	 36.46	0	725214..726203	+	329	154148706	galE	CHAB381_0783	-	UDP-glucose 4-epimerase
736	 17.89	-2	726754..726876	-	40	154149437	-	CHAB381_0784	-	hypothetical protein
737	 40.10	+1	727067..727258	-	63	154148003	-	CHAB381_0785	-	hypothetical protein
738	 24.37	-1	727255..727689	-	144	154148747	-	CHAB381_0786	-	putative DNA double-strand break repair Rad50 ATPase
739	 26.47	-1	727679..729646	-	655	154148056	-	CHAB381_0787	-	dynamin family protein
740	 24.68	-1	731460..732638	-	392	154148243	-	CHAB381_0789	-	hypothetical protein
741	 22.67	-1	734206..734355	+	49	154148875	-	CHAB381_0792	-	hypothetical protein
742	 31.41	0	734978..735394	-	138	154147927	-	CHAB381_0793	-	Plp4
743	 36.48	0	735450..740000	-	1516	154149537	-	CHAB381_0794	-	outer membrane protein
31.82	MEAN

5.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.