IslandPathversion 1.0

IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.82 STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
465	 27.78	0	458396..458719	-	107	154148829	-	CHAB381_0499	-	hypothetical protein
466	 34.70	0	458733..459827	-	364	154148037	prfB	CHAB381_0500	-	peptide chain release factor 2
467	 32.48	0	459937..460758	+	273	154148340	panC	CHAB381_0501	-	pantoate--beta-alanine ligase
468	 34.33	0	460760..462061	+	433	154149538	-	CHAB381_0502	-	hypothetical protein
469	 29.02	0	462042..463037	+	331	154149315	-	CHAB381_0504	-	tRNA(Ile)-lysidine synthase
470	 25.94	-1	463017..463760	-	247	154148100	-	CHAB381_0503	-	hypothetical protein
471	 34.90	0	463817..464455	-	212	154148245	-	CHAB381_0505	-	lipoprotein
472	 35.81	0	464436..465725	-	429	154149237	miaB	CHAB381_0506	-	tRNA-I(6)A37 thiotransferase enzyme MiaB
473	 28.40	0	465722..465964	-	80	154149491	-	CHAB381_0507	-	hypothetical protein
474	 35.06	0	466126..467226	+	366	154148222	nusA	CHAB381_0508	-	transcription elongation factor NusA
475	 32.60	0	467481..468575	+	364	154148772	-	CHAB381_0509	-	hypothetical protein
476	 28.99	0	468568..468843	+	91	154149218	-	CHAB381_0510	-	hypothetical protein
477	 32.31	0	468836..470002	+	388	154148489	-	CHAB381_0511	-	hypothetical protein
478	 31.33	0	469999..470646	+	215	154149411	-	CHAB381_0512	-	ABC transporter, ATP-binding protein
479	 30.21	0	470643..471602	+	319	154148650	-	CHAB381_0513	-	hypothetical protein
480	 27.02	0	471664..472392	-	242	154148828	-	CHAB381_0514	-	methyltransferase domain-containing protein
481	 34.75	0	472376..472729	-	117	154148068	-	CHAB381_0515	-	zinc uptake regulation protein
482	 33.67	0	473055..473954	+	299	154149361	-	CHAB381_0516	-	periplasmic solute binding protein
483	 32.73	0	473999..474820	+	273	154148800	-	CHAB381_0517	-	manganese transport system ATP-binding protein MntA
484	 34.97	0	474813..475607	+	264	154148927	-	CHAB381_0518	-	cation ABC transporter, permease protein
485	 35.34	0	475838..476335	+	165	154147936	bcp	CHAB381_0519	-	bacterioferritin comigratory protein
486	 31.12	0	476393..477205	+	270	154149175	-	CHAB381_0520	-	amino acid
487	 19.51	-2	477354..477476	-	40	154148139	-	CHAB381_0521	-	hypothetical protein
488	 33.99	0	477610..478827	-	405	154148445	pgi	CHAB381_0522	-	glucose-6-phosphate isomerase
489	 34.54	0	478814..479644	-	276	154149225	galU	CHAB381_0523	-	UTP-glucose-1-phosphate uridylyltransferase
490	 27.78	0	479714..480289	+	191	154148673	-	CHAB381_0524	-	thymidylate synthase
491	 33.87	0	480384..481124	-	246	154149441	-	CHAB381_0525	-	putative secreted protein
492	 33.33	0	481270..482037	+	255	154148472	-	CHAB381_0526	-	M24/M37 family peptidase
493	 34.23	0	482104..482547	+	147	154148597	-	CHAB381_0527	-	hypothetical protein
494	 30.92	0	482557..483219	+	220	154149518	-	CHAB381_0528	-	transcriptional activator protein CopR
495	 23.74	-1	483209..484375	+	388	154148352	-	CHAB381_0529	-	sensor histidine kinase
496	 34.01	0	484377..485714	-	445	154149340	-	CHAB381_0530	-	sodium- and chloride-dependent transporter
497	 27.39	0	485854..486240	+	128	154148994	-	CHAB381_0531	-	hypothetical protein
498	 17.46	-2	486521..486646	+	41	154148238	-	CHAB381_0532	-	hypothetical protein
499	 37.08	+1	486694..487626	-	310	154148885	nifR	CHAB381_0533	-	NifR3 family protein
500	 31.32	0	487659..488651	-	330	154147994	-	CHAB381_0534	-	hypothetical protein
501	 31.64	0	488662..489015	-	117	154149522	dksA	CHAB381_0535	-	DnaK suppressor protein
502	 30.48	0	489025..489480	-	151	154147919	-	CHAB381_0536	-	hypothetical protein
503	 36.59	0	489473..490363	-	296	154148982	accD	CHAB381_0537	-	acetyl-CoA carboxylase subunit beta
504	 34.98	0	490449..492518	-	689	154147905	-	CHAB381_0538	-	transporter
505	 35.56	0	492528..493469	-	313	154148629	-	CHAB381_0539	-	immunogenic protein
506	 37.19	+1	493553..494200	-	215	154149357	-	CHAB381_0540	-	cobalt import ATP-binding protein CbiO
507	 28.42	0	494197..494847	-	216	154148342	-	CHAB381_0541	-	putative cobalt ABC transporter CbiQ, permease subunit
508	 29.75	0	494844..495290	-	148	154149050	-	CHAB381_0542	-	hypothetical protein
509	 36.43	0	495287..495868	-	193	154148148	-	CHAB381_0543	-	cobalt transport protein CbiM
510	 21.43	-1	496077..496202	+	41	154148923	-	CHAB381_0544	-	hypothetical protein
511	 34.78	0	496206..496964	-	252	154147896	-	CHAB381_0545	-	ABC-type Co2+ transport system, periplasmic component
512	 32.93	0	497090..497584	+	164	154148357	luxS	CHAB381_0546	-	S-ribosylhomocysteinase
513	 30.60	0	497596..497997	-	133	154148199	-	CHAB381_0547	-	protein YhbP
514	 31.45	0	498047..498736	+	229	154148752	-	CHAB381_0548	-	deoxyuridine triphosphatase domain-containing protein
515	 33.42	0	499506..501884	-	792	154148009	lon	CHAB381_0549	-	ATP-dependent protease La
516	 32.55	0	501894..502532	-	212	154148931	-	CHAB381_0550	-	competence lipoprotein
517	 33.97	0	502616..503401	+	261	154148187	proC	CHAB381_0551	-	pyrroline-5-carboxylate reductase
518	 31.37	0	503478..504089	+	203	154148395	-	CHAB381_0552	-	prepilin-type N- terminal cleavage/methylation domain-containing protein
519	 32.16	0	504102..505037	+	311	154149476	-	CHAB381_0553	-	prepilin-type N- terminal cleavage/methylation domain-containing protein
520	 31.08	0	505034..505477	+	147	154148552	-	CHAB381_0554	-	hypothetical protein
521	 28.91	0	505491..506033	+	180	154148855	-	CHAB381_0555	-	sigma 54 modulation protein/ribosomal protein S30EA
522	 33.26	0	506246..507580	+	444	154147877	ffh	CHAB381_0556	-	signal recognition particle protein
523	 35.09	0	507642..507869	+	75	154147869	rpsP	CHAB381_0557	-	ribosomal protein S16
524	 33.33	0	507872..508114	+	80	154148786	-	CHAB381_0558	-	hypothetical protein
525	 27.87	0	508107..508637	+	176	154147973	rimM	CHAB381_0559	-	16S rRNA processing protein RimM
526	 30.77	0	508634..509335	+	233	154148537	trmD	CHAB381_0560	-	tRNA (guanine-N(1)-)-methyltransferase
527	 33.33	0	509332..509688	+	118	154149466	rplS	CHAB381_0561	-	50S ribosomal protein L19
528	 26.72	0	510826..511218	+	130	154149293	-	CHAB381_0562	-	thioesterase family protein
529	 34.99	0	511295..512743	-	482	154148285	-	CHAB381_0563	-	RND efflux system, outer membrane lipoprotein CmeC
530	 35.36	0	512736..515900	-	1054	154149372	-	CHAB381_0564	-	AcrB protein
531	 34.18	0	515900..516964	-	354	154148438	-	CHAB381_0565	-	CmeA
532	 28.21	0	517084..517707	-	207	154148040	-	CHAB381_0566	-	transcription regulator protein
533	 34.09	0	517932..518195	+	87	154149215	groS	CHAB381_0567	-	co-chaperonin GroES
534	 37.44	+1	518211..519842	+	543	154148819	groL	CHAB381_0568	-	chaperonin GroEL
535	 15.56	-2	519889..520023	-	44	154148085	-	CHAB381_0569	-	hypothetical protein
536	 27.50	0	520301..520420	+	39	154148974	-	CHAB381_0570	-	hypothetical protein
537	 27.38	0	520689..521276	-	195	154148226	-	CHAB381_0571	-	hypothetical protein
538	 32.46	0	522022..523050	-	342	154148214	-	CHAB381_0572	-	D-alanyl-alanine synthetase A
539	 34.41	0	523064..523618	-	184	154148334	ruvA	CHAB381_0573	-	holliday junction DNA helicase RuvA
540	 29.35	0	523619..524170	-	183	154149345	-	CHAB381_0574	-	hypothetical protein
541	 29.53	0	524167..525033	-	288	154148511	-	CHAB381_0575	-	putative ABC transport system periplasmic substrate-binding protein
542	 36.34	0	525036..525767	-	243	154148704	-	CHAB381_0576	-	methionine import ATP-binding protein MetN
543	 31.52	0	525764..526867	-	367	154149262	-	CHAB381_0577	-	ABC transport system permease
544	 34.19	0	527140..528537	+	465	154148088	mviN	CHAB381_0578	-	integral membrane protein MviN
545	 34.54	0	528524..529930	+	468	154148402	cysS	CHAB381_0579	-	cysteinyl-tRNA synthetase
546	 33.22	0	529927..531642	+	571	154149325	-	CHAB381_0580	-	lipid A export ATP-binding/permease protein MsbA
547	 34.94	0	531712..532767	+	351	154148606	pyrD	CHAB381_0581	-	dihydroorotate dehydrogenase 2
548	 32.29	0	532768..534012	+	414	154148608	-	CHAB381_0582	-	M16 family peptidase
549	 38.35	+1	534015..534911	+	298	154149515	dapA	CHAB381_0583	-	dihydrodipicolinate synthase
550	 38.80	+1	534911..535696	+	261	154148012	-	CHAB381_0584	-	7-alpha-hydroxysteroid dehydrogenase
551	 34.57	0	535696..536259	+	187	154148964	pgsA	CHAB381_0585	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
552	 37.46	+1	536746..537423	-	225	154148976	-	CHAB381_0586	-	hypothetical protein
553	 23.66	-1	537445..538209	-	254	154148337	-	CHAB381_0587	-	hypothetical protein
554	 27.30	0	538328..538609	-	93	154148750	-	CHAB381_0588	-	hypothetical protein
555	 35.76	0	538744..539610	-	288	154148050	-	CHAB381_0589	-	peptidase M10A and M12B, matrixin and adamalysin
556	 23.79	-1	539623..540387	-	254	154149394	-	CHAB381_0590	-	hypothetical protein
557	 28.01	0	540505..540786	-	93	154148695	-	CHAB381_0591	-	hypothetical protein
558	 24.10	-1	541760..542506	-	248	154149201	-	CHAB381_0593	-	hypothetical protein
559	 34.48	0	542617..544017	-	466	154148969	-	CHAB381_0594	-	type I secretion target GGXGXDXXX repeat-containing protein
560	 32.82	0	543986..544180	-	64	154148216	-	CHAB381_0595	-	hypothetical protein
561	 20.58	-2	544283..545035	-	250	154149407	-	CHAB381_0596	-	hypothetical protein
562	 36.37	0	545152..546798	-	548	154148123	-	CHAB381_0597	-	ApxIVA Var3
563	 22.98	-1	546841..547584	-	247	154148816	-	CHAB381_0598	-	hypothetical protein
564	 32.32	0	547829..548719	-	296	154148005	-	CHAB381_0599	-	LysM domain-containing protein
31.82	MEAN

5.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.