IslandPathversion 1.0

IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.82 STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
313	 29.87	0	301144..301461	+	105	154149178	-	CHAB381_0333	-	hypothetical protein
314	 31.00	0	302048..303205	+	385	154148406	arsB	CHAB381_0334	-	arsenical-resistance protein
315	 34.14	0	303208..304203	+	331	154149200	-	CHAB381_0335	-	permease
316	 31.84	0	304289..304690	+	133	154148262	-	CHAB381_0336	-	hypothetical protein
317	 34.18	0	304872..305108	+	78	154149397	-	CHAB381_0337	-	ArsC
318	 27.38	0	305196..305363	+	55	154148462	-	CHAB381_0338	-	threonine dehydratase catabolic (threonine deaminase)
319	 36.32	0	306048..306818	-	256	154148000	murB	CHAB381_0339	-	UDP-N-acetylenolpyruvoylglucosamine reductase
320	 39.33	+1	306823..307689	-	288	154148760	-	CHAB381_0340	-	hypothetical protein
321	 25.44	-1	308087..308200	-	37	154148078	-	CHAB381_0341	-	hypothetical protein
322	 35.00	0	308181..308600	+	139	154149252	-	CHAB381_0342	-	RDD protein
323	 21.11	-2	308822..309001	+	59	154148299	-	CHAB381_0343	-	hypothetical protein
324	 33.57	0	309385..310242	-	285	154149542	-	CHAB381_0344	-	patatin family phospholipase
325	 40.31	+1	310277..311638	-	453	154148755	-	CHAB381_0345	-	glutamate dehydrogenase
326	 29.44	0	311631..312323	-	230	154147991	-	CHAB381_0346	-	hypothetical protein
327	 36.16	0	312712..313419	-	235	154149041	ung	CHAB381_0347	-	uracil-DNA glycosylase
328	 31.32	0	313419..314459	-	346	154148031	-	CHAB381_0348	-	ABC-type multidrug transport system permease component
329	 31.60	0	314456..315550	-	364	154149255	-	CHAB381_0349	-	putative ABC transporter, permease protein
330	 34.81	0	315547..317172	-	541	154148279	-	CHAB381_0350	-	ABC transporter, ATP-binding protein
331	 35.88	0	317169..318149	-	326	154149454	-	CHAB381_0351	-	secretion protein HlyD
332	 26.67	0	318456..318665	-	69	154148273	-	CHAB381_0352	-	hypothetical protein
333	 30.37	0	318652..320742	-	696	154149333	-	CHAB381_0353	-	metal transporting atpase Mta72
334	 30.58	0	320739..321101	-	120	154148326	-	CHAB381_0354	-	hypothetical protein
335	 33.33	0	321079..321357	-	92	154149473	-	CHAB381_0355	-	hypothetical protein
336	 29.91	0	321357..321677	-	106	154148553	-	CHAB381_0356	-	hypothetical protein
337	 23.05	-1	321678..321998	-	106	154149520	-	CHAB381_0357	-	hypothetical protein
338	 30.56	0	322385..323359	-	324	154148595	-	CHAB381_0358	-	integral membrane protein
339	 30.38	0	323452..325077	-	541	154148912	-	CHAB381_0359	-	hypothetical protein
340	 20.83	-2	325100..325411	-	103	154148207	-	CHAB381_0360	-	hypothetical protein
341	 34.23	0	326302..326859	-	185	154149092	frr	CHAB381_0361	-	ribosome recycling factor
342	 36.36	0	326925..327254	-	109	154148365	secG	CHAB381_0362	-	preprotein translocase, SecG subunit
343	 32.20	0	327368..328072	-	234	154149510	-	CHAB381_0363	-	hypothetical protein
344	 31.72	0	328129..328809	-	226	154148817	-	CHAB381_0364	-	hypothetical protein
345	 32.56	0	328790..329434	-	214	154149290	-	CHAB381_0365	-	superoxide dismutase (Fe)
346	 33.60	0	334533..335645	-	370	154148559	-	CHAB381_0367	-	quinolone resistence protein major facilitator family transporter
347	 37.21	+1	335645..336961	-	438	154148246	-	CHAB381_0368	-	sodium-dependent tyrosine transporter
348	 34.82	0	337205..337741	-	178	154149187	-	CHAB381_0369	-	hypothetical protein
349	 37.56	+1	337931..338971	+	346	154148059	-	CHAB381_0370	-	cytochrome c551 peroxidase (cytochrome cperoxidase) (CCP)
350	 28.88	0	339188..340174	-	328	154148938	-	CHAB381_0371	-	DNA polymerase III subunit delta
351	 34.16	0	340167..342092	-	641	154148680	-	CHAB381_0372	-	ribonuclease R
352	 29.43	0	342089..342883	-	264	154149132	-	CHAB381_0373	-	hypothetical protein
353	 39.78	+1	343013..344035	+	340	154148320	ilvC	CHAB381_0374	-	ketol-acid reductoisomerase
354	 33.24	0	344036..345100	+	354	154148192	-	CHAB381_0375	-	polysaccharide deacetylase family protein
355	 37.17	+1	345084..345890	+	268	154148585	-	CHAB381_0376	-	SMF family protein
356	 39.58	+1	345890..346273	+	127	154149272	-	CHAB381_0377	-	Holliday junction resolvase-like protein
357	 19.30	-2	346324..346437	-	37	154147939	-	CHAB381_0378	-	hypothetical protein
358	 31.46	0	347154..347687	-	177	154149546	-	CHAB381_0379	-	hypothetical protein
359	 32.70	0	347684..348319	-	211	154147881	-	CHAB381_0380	-	putative integral membrane protein
360	 31.55	0	349043..349378	+	111	154148915	-	CHAB381_0381	-	cysteine repeat-containing protein 1 PbCRM1
361	 25.45	-1	350249..350527	+	92	154148814	-	CHAB381_0383	-	hypothetical protein
362	 27.08	0	351034..351177	+	47	154148295	-	CHAB381_0384	-	hypothetical protein
363	 27.50	0	352172..352291	+	39	154149013	-	CHAB381_0385	-	hypothetical protein
364	 27.35	0	352300..352416	+	38	154148502	-	CHAB381_0386	-	hypothetical protein
365	 22.88	-1	352560..352712	+	50	154149209	-	CHAB381_0388	-	hypothetical protein
366	 15.08	-2	352709..352834	-	41	154148479	-	CHAB381_0387	-	hypothetical protein
367	 24.39	-1	353401..353523	+	40	154148921	-	CHAB381_0389	-	hypothetical protein
368	 17.83	-2	354122..354250	+	42	154149392	-	CHAB381_0390	-	hypothetical protein
369	 20.29	-2	354854..354991	+	45	154147930	-	CHAB381_0391	-	hypothetical protein
370	 21.05	-2	355085..355198	-	37	154148529	-	CHAB381_0392	-	hypothetical protein
371	 30.95	0	355538..355831	-	97	154148580	cas	CHAB381_0393	-	CRISPR-associated protein Cas2
372	 30.47	0	356837..357220	-	127	154148089	-	CHAB381_0395	-	CRISPR-associated protein Cas4
373	 29.55	0	357316..359694	-	792	154148157	-	CHAB381_0396	-	CRISPR-associated helicase Cas3 domain-containing protein
374	 31.37	0	359682..360395	-	237	154148469	cas5h	CHAB381_0397	-	CRISPR-associated protein Cas5, hmari subtype
375	 34.56	0	360392..361285	-	297	154149186	-	CHAB381_0398	-	hypothetical protein
376	 26.36	-1	361278..362912	-	544	154148676	-	CHAB381_0399	-	hypothetical protein
377	 30.51	0	362913..363620	-	235	154148681	cas	CHAB381_0400	-	CRISPR-associated protein Cas6
378	 40.64	+1	363824..364672	-	282	154148635	-	CHAB381_0401	-	Zn-dependent protease with chaperone function
379	 27.04	0	364998..366347	-	449	154148145	-	CHAB381_0402	-	sensory trasnduction histidine kinase
380	 32.28	0	366341..367006	-	221	154148866	-	CHAB381_0403	-	transcriptional activator protein CopR
381	 24.83	-1	366994..367440	-	148	154148343	-	CHAB381_0404	-	nucleotidyltransferase domain-containing protein
382	 36.90	0	367433..368218	-	261	154149301	pstB	CHAB381_0405	-	phosphate ABC transporter, ATP-binding protein
383	 35.33	0	368228..369079	-	283	154148114	pstA	CHAB381_0406	-	phosphate ABC transporter, permease protein PstA
384	 37.20	+1	369079..369957	-	292	154148345	pstC	CHAB381_0407	-	phosphate ABC transporter, permease protein PstC
385	 37.95	+1	370036..371052	-	338	154148565	pstS	CHAB381_0408	-	phosphate ABC transporter, phosphate-binding protein PstS
386	 30.63	0	371155..371967	+	270	154149344	-	CHAB381_0409	-	ABC transporter phosphate binding protein
387	 27.91	0	371930..372058	+	42	154148785	-	CHAB381_0410	-	hypothetical protein
388	 31.37	0	372031..372438	+	135	154148184	-	CHAB381_0411	-	hypothetical protein
389	 34.70	0	372440..373099	+	219	154149486	-	CHAB381_0412	-	hypothetical protein
390	 29.63	0	373578..373793	-	71	154148322	-	CHAB381_0413	-	hypothetical protein
391	 32.52	0	373839..373961	+	40	154148907	-	CHAB381_0415	-	hypothetical protein
392	 32.46	0	373958..374071	-	37	154147955	-	CHAB381_0414	-	hypothetical protein
393	 28.49	0	374668..375348	-	226	154149058	-	CHAB381_0417	-	putative TPR domain containing protein
394	 34.71	0	375437..376819	+	460	154148662	-	CHAB381_0418	-	phosphomannomutase/phosphoglucomutase (PMM/PGM)
395	 29.65	0	376806..377918	+	370	154149399	-	CHAB381_0419	-	chain length determinant protein
396	 36.00	0	377911..378921	+	336	154148940	-	CHAB381_0420	-	alanine racemase
397	 29.62	0	379695..380906	-	403	154148368	-	CHAB381_0421	-	ComEC/Rec2 family protein
398	 34.36	0	381121..381315	+	64	154149096	-	CHAB381_0422	-	hypothetical protein
399	 41.49	+1	384250..384813	+	187	154148560	-	CHAB381_0425	-	formate dehydrogenase iron-sulfur subunit
400	 33.74	0	385119..387800	+	893	154149519	-	CHAB381_0426	-	anaerobic ribonucleoside triphosphate reductase
401	 31.42	0	387904..388581	+	225	154148652	-	CHAB381_0427	-	anaerobic ribonucleoside-triphosphate reductase activating protein
402	 31.58	0	388724..389236	+	170	154148046	-	CHAB381_0428	-	hypothetical protein
403	 22.81	-1	389463..389576	+	37	154149353	-	CHAB381_0429	-	hypothetical protein
404	 33.51	0	389583..390140	-	185	154148444	rnhB	CHAB381_0430	-	ribonuclease HII
405	 26.38	-1	390147..391253	-	368	154148312	-	CHAB381_0431	-	putative helix-turn-helix containsing protein
406	 32.34	0	391371..392078	+	235	154149257	-	CHAB381_0432	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
407	 32.51	0	392071..392799	+	242	154148892	-	CHAB381_0433	-	glutamine transport ATP-binding protein GlnQ
408	 33.20	0	392814..393554	+	246	154148143	-	CHAB381_0434	-	arginine-binding periplasmic protein 1
409	 32.75	0	393564..394076	+	170	154149453	-	CHAB381_0435	-	hypothetical protein
410	 35.61	0	394069..394683	+	204	154147874	thiE	CHAB381_0436	-	thiamine-phosphate pyrophosphorylase
411	 34.75	0	394670..395446	+	258	154149465	-	CHAB381_0437	-	putative undecaprenol kinase
412	 34.83	0	395661..396461	+	266	154148477	-	CHAB381_0438	-	antigenic protein
31.82	MEAN

5.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.