IslandPathversion 1.0

IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.82 STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
249	 34.33	0	238987..240489	-	500	154148294	-	CHAB381_0266	-	hypothetical protein
250	 33.97	0	240486..240959	-	157	154148929	-	CHAB381_0267	-	resolvase
251	 35.09	0	241232..241972	+	246	154148827	-	CHAB381_0268	-	hypothetical protein
252	 36.57	0	242877..243185	+	102	154149039	-	CHAB381_0271	-	hypothetical protein
253	 28.37	0	243186..243548	+	120	154149124	-	CHAB381_0272	-	hypothetical protein
254	 29.13	0	243538..243846	+	102	154148430	-	CHAB381_0273	-	hypothetical protein
255	 31.67	0	243839..244078	+	79	154149417	-	CHAB381_0274	-	putative lipoprotein
256	 34.81	0	244071..244409	+	112	154148642	-	CHAB381_0275	-	hypothetical protein
257	 34.52	0	244396..244983	+	195	154148627	-	CHAB381_0276	-	hypothetical protein
258	 39.13	+1	245001..245915	+	304	154149442	-	CHAB381_0277	-	hypothetical protein
259	 27.74	0	245926..246426	+	166	154148967	-	CHAB381_0278	-	hypothetical protein
260	 28.16	0	246558..246731	+	57	154147913	-	CHAB381_0279	-	hypothetical protein
261	 37.35	+1	246728..248320	+	530	154148189	-	CHAB381_0280	-	phage tape measure protein
262	 44.72	+2	248325..249167	+	280	154149418	-	CHAB381_0281	-	hypothetical protein
263	 37.16	+1	249170..250318	+	382	154148937	-	CHAB381_0282	-	hypothetical protein
264	 37.32	+1	250318..251295	+	325	154148236	-	CHAB381_0283	-	hypothetical protein
265	 35.34	0	251288..252334	+	348	154148034	-	CHAB381_0284	-	hypothetical protein
266	 34.90	0	252331..252903	+	190	154148953	-	CHAB381_0285	-	hypothetical protein
267	 37.70	+1	252896..253651	+	251	154148247	-	CHAB381_0286	-	hypothetical protein
268	 39.32	+1	253653..255707	+	684	154149009	-	CHAB381_0287	-	hypothetical protein
269	 40.35	+1	255719..255946	+	75	154149213	-	CHAB381_0288	-	hypothetical protein
270	 39.42	+1	255957..256268	+	103	154148456	-	CHAB381_0289	-	hypothetical protein
271	 35.19	0	256271..256648	+	125	154149391	-	CHAB381_0290	-	hypothetical protein
272	 28.33	0	256770..257669	+	299	154148094	-	CHAB381_0291	-	DNA-directed DNA polymerase
273	 37.85	+1	257942..258118	-	58	154148869	-	CHAB381_0292	-	hypothetical protein
274	 23.08	-1	258130..258246	+	38	154147901	-	CHAB381_0293	-	hypothetical protein
275	 36.61	0	258548..259066	-	172	154149204	ppa	CHAB381_0294	-	inorganic diphosphatase
276	 36.10	0	259301..259879	-	192	154148086	-	CHAB381_0295	-	adenylate kinase
277	 37.61	+1	259876..261630	-	584	154149426	aspS	CHAB381_0296	-	aspartyl-tRNA synthetase
278	 33.33	0	261833..262708	+	291	154148323	-	CHAB381_0297	-	inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)
279	 31.62	0	262713..264233	+	506	154147949	-	CHAB381_0298	-	DNA repair protein RecN
280	 35.02	0	264318..265088	+	256	154148554	-	CHAB381_0299	-	putative deoxyribonuclease Sll1786
281	 30.33	0	265098..266063	+	321	154148150	-	CHAB381_0300	-	regulatory protein dnir
282	 39.00	+1	266098..266820	+	240	154149193	-	CHAB381_0301	-	rare lipoprotein A rlpa
283	 37.52	+1	266822..267394	+	190	154149199	hisB	CHAB381_0302	-	imidazoleglycerol-phosphate dehydratase
284	 34.76	0	267391..267879	+	162	154148202	-	CHAB381_0303	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase)
285	 28.46	0	267870..268382	+	170	154148999	-	CHAB381_0304	-	hypothetical protein
286	 29.11	0	268364..268837	+	157	154148051	-	CHAB381_0305	-	OstA family protein
287	 31.91	0	268834..269466	+	210	154147982	-	CHAB381_0306	-	GTP-binding protein
288	 32.90	0	269460..269918	+	152	154148667	-	CHAB381_0307	-	acetyltransferase
289	 29.24	0	269885..270373	+	162	154149381	-	CHAB381_0308	-	hypothetical protein
290	 37.44	+1	270370..272196	+	608	154148433	mrdA	CHAB381_0309	-	penicillin-binding protein 2
291	 32.37	0	272174..272902	+	242	154148448	-	CHAB381_0310	-	phage protein Gp37/Gp68
292	 30.27	0	273116..280144	+	2342	154148651	-	CHAB381_0311	-	hypothetical protein
293	 33.91	0	280529..281218	-	229	154148639	modB	CHAB381_0313	-	molybdate ABC transporter, permease protein
294	 17.39	-2	281215..281352	-	45	154149358	-	CHAB381_0314	-	hypothetical protein
295	 34.15	0	281415..282269	-	284	154147924	-	CHAB381_0315	-	sulfate/thiosulfate import ATP-binding protein CysA (Sulfate-transporting ATPase)
296	 29.77	0	282266..282658	-	130	154149109	-	CHAB381_0316	-	hypothetical protein
297	 35.90	0	282648..283388	-	246	154149022	modA	CHAB381_0317	-	molybdate ABC transporter, periplasmic molybdate-binding protein
298	 32.57	0	283409..284194	-	261	154149318	-	CHAB381_0318	-	ModE family transcriptional regulator
299	 35.79	0	284347..285039	+	230	154148618	-	CHAB381_0319	-	VacJ family lipoprotein
300	 33.67	0	285041..285628	+	195	154149385	ttg2D	CHAB381_0320	-	toluene tolerance protein Ttg2D
301	 32.68	0	285625..288066	+	813	154149369	-	CHAB381_0321	-	putative integral membrane protein
302	 28.23	0	288063..288806	+	247	154149146	-	CHAB381_0322	-	putative integral membrane protein
303	 38.27	+1	288836..289483	+	215	154148870	-	CHAB381_0323	-	rubrerythrin
304	 34.71	0	289584..290456	+	290	154148693	-	CHAB381_0324	-	prenyltransferase
305	 29.17	0	290466..290777	+	103	154149075	-	CHAB381_0325	-	hypothetical protein
306	 34.90	0	290770..291726	+	318	154148170	moaA	CHAB381_0326	-	molybdenum cofactor biosynthesis protein A
307	 33.74	0	291726..292469	+	247	154149121	-	CHAB381_0327	-	radical SAM domain-containing protein
308	 36.08	0	292470..293051	+	193	154149198	-	CHAB381_0328	-	putative 6-pyruvoyl tetrahydrobiopterin synthase (ptps)(ptp synthase)
309	 33.96	0	293913..294392	+	159	154148506	-	CHAB381_0329	-	mercuric transport protein periplasmic component
310	 28.17	0	296734..296946	+	70	154149479	-	CHAB381_0330	-	hypothetical protein
311	 28.31	0	296983..297798	+	271	154148524	-	CHAB381_0331	-	hypothetical protein
312	 29.87	0	297829..300366	+	845	154149514	-	CHAB381_0332	-	dead/deah box helicase domain-containing protein
313	 29.87	0	301144..301461	+	105	154149178	-	CHAB381_0333	-	hypothetical protein
314	 31.00	0	302048..303205	+	385	154148406	arsB	CHAB381_0334	-	arsenical-resistance protein
315	 34.14	0	303208..304203	+	331	154149200	-	CHAB381_0335	-	permease
316	 31.84	0	304289..304690	+	133	154148262	-	CHAB381_0336	-	hypothetical protein
317	 34.18	0	304872..305108	+	78	154149397	-	CHAB381_0337	-	ArsC
318	 27.38	0	305196..305363	+	55	154148462	-	CHAB381_0338	-	threonine dehydratase catabolic (threonine deaminase)
319	 36.32	0	306048..306818	-	256	154148000	murB	CHAB381_0339	-	UDP-N-acetylenolpyruvoylglucosamine reductase
320	 39.33	+1	306823..307689	-	288	154148760	-	CHAB381_0340	-	hypothetical protein
321	 25.44	-1	308087..308200	-	37	154148078	-	CHAB381_0341	-	hypothetical protein
322	 35.00	0	308181..308600	+	139	154149252	-	CHAB381_0342	-	RDD protein
323	 21.11	-2	308822..309001	+	59	154148299	-	CHAB381_0343	-	hypothetical protein
324	 33.57	0	309385..310242	-	285	154149542	-	CHAB381_0344	-	patatin family phospholipase
325	 40.31	+1	310277..311638	-	453	154148755	-	CHAB381_0345	-	glutamate dehydrogenase
326	 29.44	0	311631..312323	-	230	154147991	-	CHAB381_0346	-	hypothetical protein
327	 36.16	0	312712..313419	-	235	154149041	ung	CHAB381_0347	-	uracil-DNA glycosylase
328	 31.32	0	313419..314459	-	346	154148031	-	CHAB381_0348	-	ABC-type multidrug transport system permease component
329	 31.60	0	314456..315550	-	364	154149255	-	CHAB381_0349	-	putative ABC transporter, permease protein
330	 34.81	0	315547..317172	-	541	154148279	-	CHAB381_0350	-	ABC transporter, ATP-binding protein
331	 35.88	0	317169..318149	-	326	154149454	-	CHAB381_0351	-	secretion protein HlyD
332	 26.67	0	318456..318665	-	69	154148273	-	CHAB381_0352	-	hypothetical protein
333	 30.37	0	318652..320742	-	696	154149333	-	CHAB381_0353	-	metal transporting atpase Mta72
334	 30.58	0	320739..321101	-	120	154148326	-	CHAB381_0354	-	hypothetical protein
335	 33.33	0	321079..321357	-	92	154149473	-	CHAB381_0355	-	hypothetical protein
336	 29.91	0	321357..321677	-	106	154148553	-	CHAB381_0356	-	hypothetical protein
337	 23.05	-1	321678..321998	-	106	154149520	-	CHAB381_0357	-	hypothetical protein
338	 30.56	0	322385..323359	-	324	154148595	-	CHAB381_0358	-	integral membrane protein
339	 30.38	0	323452..325077	-	541	154148912	-	CHAB381_0359	-	hypothetical protein
340	 20.83	-2	325100..325411	-	103	154148207	-	CHAB381_0360	-	hypothetical protein
341	 34.23	0	326302..326859	-	185	154149092	frr	CHAB381_0361	-	ribosome recycling factor
342	 36.36	0	326925..327254	-	109	154148365	secG	CHAB381_0362	-	preprotein translocase, SecG subunit
343	 32.20	0	327368..328072	-	234	154149510	-	CHAB381_0363	-	hypothetical protein
344	 31.72	0	328129..328809	-	226	154148817	-	CHAB381_0364	-	hypothetical protein
345	 32.56	0	328790..329434	-	214	154149290	-	CHAB381_0365	-	superoxide dismutase (Fe)
346	 33.60	0	334533..335645	-	370	154148559	-	CHAB381_0367	-	quinolone resistence protein major facilitator family transporter
347	 37.21	+1	335645..336961	-	438	154148246	-	CHAB381_0368	-	sodium-dependent tyrosine transporter
348	 34.82	0	337205..337741	-	178	154149187	-	CHAB381_0369	-	hypothetical protein
31.82	MEAN

5.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.