IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.82   STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
76	 35.12	0	78896..79510	+	204	154148894	rplD	CHAB381_0085	-	50S ribosomal protein L4
77	 34.40	0	79512..79793	+	93	154148877	rplW	CHAB381_0086	-	50S ribosomal protein L23
78	 37.67	+1	79795..80625	+	276	154147959	rplB	CHAB381_0087	-	50S ribosomal protein L2
79	 32.62	0	80625..80906	+	93	154149120	rpsS	CHAB381_0088	-	30S ribosomal protein S19
80	 36.97	0	80916..81245	+	109	154149283	rplV	CHAB381_0089	-	50S ribosomal protein L22
81	 35.34	0	81248..81943	+	231	154149468	rpsC	CHAB381_0090	-	30S ribosomal protein S3
82	 36.62	0	81946..82371	+	141	154148600	rplP	CHAB381_0091	-	50S ribosomal protein L16
83	 26.88	0	82358..82543	+	61	154149231	rpmC	CHAB381_0092	-	50S ribosomal protein L29
84	 32.94	0	82554..82805	+	83	154148095	rpsQ	CHAB381_0093	-	30S ribosomal protein S17
85	 38.75	+1	82805..83173	+	122	154148791	rplN	CHAB381_0094	-	50S ribosomal protein L14
86	 30.74	0	83173..83403	+	76	154148233	rplX	CHAB381_0095	-	50S ribosomal protein L24
87	 31.32	0	83407..83952	+	181	154148087	-	CHAB381_0096	-	50S ribosomal protein L5
88	 38.17	+1	83954..84139	+	61	154149067	rpsN	CHAB381_0097	-	ribosomal protein S14p/S29e
89	 32.58	0	84149..84544	+	131	154149530	rpsH	CHAB381_0098	-	30S ribosomal protein S8
90	 34.26	0	84620..85156	+	178	154148630	-	CHAB381_0099	-	50S ribosomal protein L6
91	 31.09	0	85166..85522	+	118	154148292	rplR	CHAB381_0100	-	50S ribosomal protein L18
92	 31.97	0	85532..85972	+	146	154148935	rpsE	CHAB381_0101	-	30S ribosomal protein S5
93	 36.32	0	85983..86384	+	133	154148588	rplO	CHAB381_0102	-	50S ribosomal protein L15
94	 33.49	0	86384..87649	+	421	154149113	-	CHAB381_0103	-	preprotein translocase subunit SecY
95	 34.78	0	87649..88407	+	252	154148348	map	CHAB381_0104	-	methionine aminopeptidase
96	 37.55	+1	88404..88877	+	157	154149511	ybaK	CHAB381_0105	-	YbaK/ebsC protein
97	 31.72	0	88904..89521	+	205	154148799	-	CHAB381_0106	-	putative methyl transferase
98	 30.40	0	89982..90800	-	272	154149336	dapF	CHAB381_0107	-	diaminopimelate epimerase
99	 26.57	-1	90775..91380	-	201	154148632	coaE	CHAB381_0108	-	dephospho-CoA kinase
100	 37.70	+1	91454..92437	+	327	154148180	purM	CHAB381_0109	-	phosphoribosylaminoimidazole synthetase
101	 33.09	0	92494..93321	-	275	154149306	-	CHAB381_0110	-	putative periplasmic protein
102	 35.78	0	93406..94794	+	462	154147872	gltX	CHAB381_0111	-	glutamyl-tRNA synthetase
103	 36.94	0	94791..96038	+	415	154149335	-	CHAB381_0112	-	NADP-dependent malic enzyme (NADP-me)
104	 36.34	0	96035..97465	+	476	154148015	pncB	CHAB381_0113	-	putative nicotinate phosphoribosyltransferase
105	 37.24	+1	97753..98853	+	366	154148765	aroC	CHAB381_0114	-	chorismate synthase
106	 36.76	0	98918..99325	+	135	154148930	-	CHAB381_0115	-	N-terminal methylation domain-containing protein
107	 34.02	0	99360..99794	-	144	154148389	moaE	CHAB381_0116	-	molybdopterin converting factor, subunit 2
108	 30.18	0	99796..100017	-	73	154148751	-	CHAB381_0117	-	hypothetical protein
109	 36.59	0	100090..101316	+	408	154148229	nspC	CHAB381_0118	-	carboxynorspermidine decarboxylase
110	 25.88	-1	101471..101698	+	75	154148563	-	CHAB381_0119	-	hypothetical protein
111	 36.54	0	101881..102879	-	332	154148017	-	CHAB381_0120	-	O-sialoglycoprotein endopeptidase
112	 35.65	0	102876..103955	-	359	154148397	dxr	CHAB381_0121	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
113	 36.22	0	103949..104710	-	253	154148963	cdsA	CHAB381_0122	-	phosphatidate cytidylyltransferase
114	 29.07	0	104752..106065	-	437	154147985	-	CHAB381_0123	-	fibronectin/fibrinogen-binding protein
115	 39.44	+1	106123..107382	+	419	154148626	leuC	CHAB381_0124	-	3-isopropylmalate dehydratase large subunit
116	 32.07	0	107385..107939	+	184	154148621	-	CHAB381_0125	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
117	 34.37	0	107936..108904	+	322	154149331	-	CHAB381_0126	-	phospholipase A
118	 18.25	-2	108954..109079	-	41	154148375	-	CHAB381_0127	-	hypothetical protein
119	 31.75	0	109353..109478	-	41	154149135	-	CHAB381_0128	-	hypothetical protein
120	 37.99	+1	109824..111497	-	557	154148861	nrfA	CHAB381_0129	-	nitrite reductase (cytochrome; ammonia-forming)
121	 39.04	+1	111515..112057	-	180	154147870	nrfH	CHAB381_0130	-	cytochrome c nitrate reductase, small subunit
122	 32.42	0	112187..113275	-	362	154148617	ribD	CHAB381_0131	-	riboflavin biosynthesis protein RibD
123	 37.39	+1	113359..113925	-	188	154148096	efp	CHAB381_0132	-	elongation factor P
124	 34.92	0	113975..115549	-	524	154148993	recJ	CHAB381_0133	-	single-stranded-DNA-specific exonuclease RecJ
125	 36.35	0	115539..117164	-	541	154149163	pyrG	CHAB381_0134	-	CTP synthetase
126	 31.35	0	117385..118542	-	385	154149149	-	CHAB381_0135	-	bacteriophage-related integrase
127	 31.53	0	121315..122310	+	331	154148072	-	CHAB381_0138	-	hypothetical protein
128	 31.89	0	122323..122739	+	138	154147996	-	CHAB381_0139	-	single-strand binding protein family
129	 23.08	-1	122739..122972	+	77	154148758	-	CHAB381_0140	-	troponin C
130	 33.05	0	122969..123673	+	234	154149261	-	CHAB381_0141	-	TrbM protein
131	 26.72	0	123681..124028	+	115	154149079	-	CHAB381_0142	-	germination-specific N-acetylmuramoyl-L-alanine amidase
132	 27.37	0	124032..125858	+	608	154147960	-	CHAB381_0143	-	hypothetical protein
133	 25.09	-1	125980..126270	+	96	154148882	-	CHAB381_0144	-	hypothetical protein
134	 27.97	0	126899..127327	+	142	154147895	-	CHAB381_0145	-	hypothetical protein
135	 26.17	-1	127350..127670	+	106	154149012	-	CHAB381_0146	-	nucleotidyltransferase family protein
136	 27.48	0	128233..129855	-	540	154148782	-	CHAB381_0148	-	relaxase/mobilization nuclease domain-containing protein
137	 23.90	-1	130587..131837	+	416	154149403	-	CHAB381_0150	-	Cpp17
138	 25.33	-1	131888..132112	-	74	154148970	-	CHAB381_0151	-	hypothetical protein
139	 21.04	-2	132205..132741	-	178	154149435	-	CHAB381_0152	-	hypothetical protein
140	 23.58	-1	132775..133338	-	187	154148864	-	CHAB381_0153	-	Cpp12
141	 25.40	-1	133422..134429	-	335	154147933	-	CHAB381_0154	-	hypothetical protein
142	 23.66	-1	134401..134886	-	161	154148325	-	CHAB381_0155	-	hypothetical protein
143	 21.54	-1	134903..135148	-	81	154149447	-	CHAB381_0156	-	hypothetical protein
144	 20.56	-2	135132..135311	-	59	154149102	-	CHAB381_0157	-	hypothetical protein
145	 25.65	-1	135408..136292	-	294	154148179	-	CHAB381_0158	-	zeta toxin superfamily protein
146	 24.65	-1	136289..136576	-	95	154147875	-	CHAB381_0159	-	hypothetical protein
147	 29.18	0	136683..143036	-	2117	154149046	-	CHAB381_0160	-	Cpp14
148	 23.90	-1	143118..143933	-	271	154148545	-	CHAB381_0162	-	hypothetical protein
149	 24.66	-1	143944..144381	-	145	154149246	-	CHAB381_0163	-	lytic transglycosylase, catalytic
150	 28.64	0	144392..146542	-	716	154148360	-	CHAB381_0164	-	DNA topoisomerase 3 (DNA topoisomerase III)
151	 19.35	-2	146554..147897	-	447	154149082	-	CHAB381_0165	-	hypothetical protein
152	 29.96	0	147910..148710	-	266	154148106	-	CHAB381_0166	-	hypothetical protein
153	 24.06	-1	148728..149654	-	308	154148821	-	CHAB381_0167	-	hypothetical protein
154	 27.83	0	149654..150343	-	229	154149472	-	CHAB381_0168	-	Cpp45
155	 21.36	-1	150340..150765	-	141	154148570	-	CHAB381_0169	-	Cpp44
156	 29.64	0	150762..152738	-	658	154149168	-	CHAB381_0170	-	cmgd4
157	 30.05	0	152728..153489	-	253	154148275	-	CHAB381_0171	-	Cpp33
158	 30.90	0	153486..154472	-	328	154148018	virB	CHAB381_0172	-	P-type DNA transfer ATPase VirB11
159	 22.62	-1	154476..154643	-	55	154148881	-	CHAB381_0173	-	hypothetical protein
160	 28.55	0	154652..155863	-	403	154148212	-	CHAB381_0174	-	cmgb10
161	 24.52	-1	155856..156785	-	309	154148925	virB	CHAB381_0175	-	P-type conjugative transfer protein VirB9
162	 27.88	0	156790..157467	-	225	154149274	-	CHAB381_0176	-	cmgB8
163	 20.43	-2	157467..157652	-	61	154148311	-	CHAB381_0177	-	hypothetical protein
164	 29.00	0	157652..158689	-	345	154149461	-	CHAB381_0178	-	hypothetical protein
165	 28.12	0	158705..159472	-	255	154148596	-	CHAB381_0179	-	transport associated protein 4
166	 29.36	0	159475..161160	-	561	154148853	-	CHAB381_0180	-	cmgb3/4
167	 33.59	0	161256..161645	+	129	154147948	-	CHAB381_0181	-	NADH dehydrogenase subunit A
168	 42.35	+2	161627..162136	+	169	154148789	-	CHAB381_0182	-	NADH dehydrogenase subunit B
169	 33.59	0	162136..162924	+	262	154148319	-	CHAB381_0183	-	NADH dehydrogenase subunit C
170	 41.32	+1	162924..164150	+	408	154149066	nuoD	CHAB381_0184	-	NADH dehydrogenase subunit D
171	 32.47	0	164147..164377	+	76	154148904	-	CHAB381_0185	-	hypothetical protein
172	 27.93	0	164374..165039	+	221	154148054	-	CHAB381_0186	-	hypothetical protein
173	 34.38	0	165041..167323	+	760	154149064	-	CHAB381_0187	-	NADH dehydrogenase subunit G
174	 37.75	+1	167316..168311	+	331	154148117	-	CHAB381_0188	-	NADH dehydrogenase subunit H
175	 34.49	0	168320..168922	+	200	154149243	-	CHAB381_0189	-	NADH dehydrogenase subunit I
31.82	MEAN

5.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.