IslandPathversion 1.0

IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.82 STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1125	 22.66	-1	1129405..1130163	-	252	154148501	-	CHAB381_1193	-	hypothetical protein
1126	 32.83	0	1130280..1133066	-	928	154149211	-	CHAB381_1194	-	type I secretion target GGXGXDXXX repeat-containing protein
1127	 26.31	-1	1133063..1133902	-	279	154149320	-	CHAB381_1195	-	hypothetical protein
1128	 27.43	0	1133908..1134618	-	236	154148393	-	CHAB381_1196	-	hypothetical protein
1129	 33.41	0	1134790..1136178	-	462	154148905	-	CHAB381_1197	-	hypothetical protein
1130	 27.55	0	1136178..1137110	-	310	154148613	-	CHAB381_1198	-	hypothetical protein
1131	 34.40	0	1137212..1138810	-	532	154149115	-	CHAB381_1199	-	hemolysin-type calcium binding protein
1132	 23.32	-1	1138823..1139551	-	242	154147963	-	CHAB381_1200	-	hypothetical protein
1133	 34.48	0	1139662..1140795	-	377	154148928	-	CHAB381_1201	-	type I secretion target GGXGXDXXX repeat-containing protein
1134	 25.64	-1	1140813..1141007	-	64	154148020	-	CHAB381_1202	-	hypothetical protein
1135	 27.27	0	1141109..1141735	-	208	154148327	-	CHAB381_1203	-	hypothetical protein
1136	 19.05	-2	1142075..1142263	-	62	154148213	-	CHAB381_1204	-	hypothetical protein
1137	 20.83	-2	1142742..1143029	-	95	154148274	-	CHAB381_1205	-	hypothetical protein
1138	 32.97	0	1143063..1144169	-	368	154149044	trmU	CHAB381_1206	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1139	 31.82	0	1144166..1144759	-	197	154147894	-	CHAB381_1207	-	hypothetical protein
1140	 30.96	0	1144769..1145527	-	252	154149023	-	CHAB381_1208	-	ParaA family ATPase
1141	 31.56	0	1145530..1146036	-	168	154148891	folK	CHAB381_1209	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1142	 34.10	0	1146033..1147070	-	345	154148164	-	CHAB381_1210	-	Xaa-Pro peptidase
1143	 37.61	+1	1147063..1147530	-	155	154149541	aroQ	CHAB381_1211	-	3-dehydroquinate dehydratase, type II
1144	 32.76	0	1147616..1148839	+	407	154147920	-	CHAB381_1212	-	chlorohydrolase
1145	 34.82	0	1148827..1149702	+	291	154148512	sppA	CHAB381_1213	-	signal peptide peptidase SppA, 36K type
1146	 39.09	+1	1149751..1150323	+	190	154149456	-	CHAB381_1214	-	hypothetical protein
1147	 32.34	0	1150320..1151021	+	233	154149003	-	CHAB381_1215	-	transformation system protein
1148	 38.31	+1	1151542..1152828	-	428	154148194	hisD	CHAB381_1216	-	histidinol dehydrogenase
1149	 34.72	0	1152853..1153719	-	288	154148206	-	CHAB381_1217	-	1-aminocyclopropane-1-carboxylate deaminase
1150	 30.37	0	1153725..1154738	-	337	154148493	-	CHAB381_1218	-	putative chemotaxis protein MotB
1151	 25.83	-1	1154728..1155900	-	390	154149236	-	CHAB381_1219	-	hypothetical protein
1152	 37.18	+1	1155910..1156974	-	354	154148727	fbaA	CHAB381_1220	-	fructose-bisphosphate aldolase
1153	 32.48	0	1156986..1157801	-	271	154148403	-	CHAB381_1221	-	foldase protein PrsA
1154	 33.80	0	1157875..1158513	+	212	154149294	nth	CHAB381_1222	-	endonuclease III
1155	 33.86	0	1158525..1159094	-	189	154148140	-	CHAB381_1223	-	signal-transduction sensor protein
1156	 29.22	0	1159195..1159632	+	145	154149014	-	CHAB381_1224	-	hypothetical protein
1157	 33.24	0	1159849..1161999	+	716	154149036	-	CHAB381_1225	-	penicillin-binding protein
1158	 29.57	0	1162046..1167073	+	1675	154149147	-	CHAB381_1226	-	alpha-2-macroglobulin family protein
1159	 34.97	0	1167147..1169771	+	874	154148039	valS	CHAB381_1227	-	valyl-tRNA synthetase
1160	 24.94	-1	1169774..1170595	+	273	154148956	-	CHAB381_1228	-	restriction endonuclease R.IB
1161	 30.39	0	1170588..1171403	+	271	154148672	-	CHAB381_1229	-	DNA methylase
1162	 29.00	0	1171400..1171768	+	122	154148792	-	CHAB381_1230	-	transmembrane signal peptide protein
1163	 33.72	0	1173284..1174306	+	340	154148200	-	CHAB381_1233	-	methionine import ATP-binding protein MetN
1164	 37.35	+1	1174309..1174980	+	223	154148490	-	CHAB381_1234	-	D-methionine transport system permease protein MetI
1165	 36.79	0	1175576..1175893	-	105	154148228	-	CHAB381_1235	-	cytochrome c553
1166	 33.70	0	1176011..1177114	-	367	154149137	-	CHAB381_1236	-	ubiquinol--cytochrome c reductase, cytochrome c1 subunit
1167	 33.10	0	1177117..1178376	-	419	154148978	-	CHAB381_1237	-	cytochrome B
1168	 42.21	+1	1178386..1178892	-	168	154148257	petA	CHAB381_1238	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1169	 20.75	-2	1179337..1179495	+	52	154148665	-	CHAB381_1240	-	hypothetical protein
1170	 36.95	0	1179613..1180911	+	432	154148011	-	CHAB381_1241	-	proton/sodium-glutamate symport protein (glutamate-aspartate carrierprotein)
1171	 22.69	-1	1181521..1182018	+	165	154149412	-	CHAB381_1242	-	hypothetical protein
1172	 38.39	+1	1182444..1183472	-	342	154148386	asd	CHAB381_1243	-	aspartate-semialdehyde dehydrogenase
1173	 35.62	0	1183459..1186086	-	875	154147908	gyrA	CHAB381_1244	-	DNA gyrase subunit A
1174	 33.71	0	1186296..1187102	+	268	154148664	-	CHAB381_1245	-	amino acid
1175	 32.49	0	1187281..1189305	-	674	154148492	glyS	CHAB381_1246	-	glycyl-tRNA synthetase subunit beta
1176	 29.45	0	1189319..1190632	-	437	154149223	-	CHAB381_1247	-	putative endonuclease/exonuclease/phosphatase
1177	 39.09	+1	1190629..1191114	-	161	154148507	-	CHAB381_1248	-	RNA methyltransferase
1178	 32.98	0	1191114..1191953	-	279	154149406	purU	CHAB381_1249	-	formyltetrahydrofolate deformylase
1179	 29.48	0	1192100..1193398	+	432	154148637	-	CHAB381_1250	-	hypothetical protein
1180	 32.84	0	1193408..1194016	+	202	154148920	gmk	CHAB381_1251	-	guanylate kinase
1181	 34.90	0	1194026..1194217	+	63	154147975	-	CHAB381_1252	-	twin argininte translocase protein A
1182	 35.90	0	1194244..1194438	+	64	154148926	-	CHAB381_1253	-	twin-arginine translocation protein TatA/E
1183	 33.08	0	1194442..1196019	+	525	154148135	argS	CHAB381_1254	-	arginyl-tRNA synthetase
1184	 33.40	0	1196019..1197599	+	526	154147958	-	CHAB381_1255	-	DNA polymerase III subunit gamma/tau
1185	 38.78	+1	1197649..1198584	+	311	154148714	-	CHAB381_1256	-	ribose-phosphate pyrophosphokinase
1186	 15.08	-2	1198983..1199108	+	41	154149432	-	CHAB381_1257	-	hypothetical protein
1187	 32.52	0	1199121..1199735	+	204	154148067	-	CHAB381_1258	-	hypothetical protein
1188	 38.13	+1	1200143..1200871	-	242	154148825	-	CHAB381_1259	-	hypothetical protein
1189	 27.35	0	1201087..1201203	-	38	154148241	-	CHAB381_1260	-	hypothetical protein
1190	 33.16	0	1201309..1202457	-	382	154148647	-	CHAB381_1261	-	polyA polymerase family protein
1191	 28.73	0	1202417..1203046	-	209	154149190	-	CHAB381_1262	-	hypothetical protein
1192	 31.28	0	1203043..1203285	-	80	154148035	-	CHAB381_1263	-	hypothetical protein
1193	 40.54	+1	1203285..1204352	-	355	154149000	leuB	CHAB381_1264	-	3-isopropylmalate dehydrogenase
1194	 34.58	0	1204362..1204841	-	159	154148307	-	CHAB381_1265	-	3-isopropylmalate dehydratase small subunit
1195	 29.98	0	1204896..1205492	-	198	154148847	-	CHAB381_1266	-	homogentisate export protein
1196	 30.04	0	1205588..1206073	+	161	154148510	-	CHAB381_1267	-	hypothetical protein
1197	 35.00	0	1206120..1207142	+	340	154149184	hemE	CHAB381_1268	-	uroporphyrinogen decarboxylase
1198	 32.89	0	1207139..1208041	+	300	154149425	-	CHAB381_1270	-	radical SAM domain-containing protein
1199	 36.61	0	1208038..1208526	-	162	154148711	-	CHAB381_1269	-	flavodoxin FldA
1200	 26.36	-1	1208531..1209247	-	238	154148805	-	CHAB381_1271	-	hypothetical protein
1201	 35.56	0	1209238..1209552	-	104	154147925	-	CHAB381_1272	-	hypothetical protein
1202	 29.51	0	1209657..1210283	+	208	154148886	trpF	CHAB381_1273	-	N-(5'phosphoribosyl)anthranilate isomerase
1203	 38.58	+1	1210334..1211515	+	393	154148171	trpB	CHAB381_1274	-	tryptophan synthase subunit beta
1204	 33.47	0	1211508..1212251	+	247	154148065	trpA	CHAB381_1275	-	tryptophan synthase subunit alpha
1205	 27.20	0	1212254..1213231	+	325	154149083	-	CHAB381_1276	-	hypothetical protein
1206	 33.08	0	1213690..1215693	-	667	154148694	-	CHAB381_1277	-	5-methylaminomethyl-2-thiouridine methyltransferase
1207	 34.11	0	1215693..1216976	-	427	154149400	-	CHAB381_1278	-	N-acetylmuramoyl-L-alanine amidase
1208	 39.93	+1	1216960..1218051	-	363	154149069	-	CHAB381_1279	-	2-nitropropane dioxygenase family oxidoreductase
1209	 33.25	0	1218061..1219272	-	403	154147934	tyrS	CHAB381_1280	-	tyrosyl-tRNA synthetase
1210	 33.10	0	1219283..1221469	-	728	154148413	-	CHAB381_1281	-	GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase)
1211	 33.33	0	1221441..1221665	-	74	154148131	rpoZ	CHAB381_1282	-	DNA-directed RNA polymerase, omega subunit
1212	 36.83	0	1221678..1222391	-	237	154149434	pyrH	CHAB381_1283	-	uridylate kinase
1213	 30.12	0	1222442..1223749	-	435	154148671	-	CHAB381_1284	-	M24/M37 family peptidase
1214	 31.37	0	1223746..1224561	-	271	154148196	-	CHAB381_1285	-	cell division protein FtsX
1215	 37.68	+1	1224558..1225247	-	229	154149504	-	CHAB381_1286	-	lipoprotein-releasing system ATP-binding protein LolD
1216	 31.04	0	1225235..1226410	-	391	154148836	-	CHAB381_1287	-	tRNA (guanine-N(7))-methyltransferase
1217	 36.46	0	1226410..1227594	-	394	154148293	-	CHAB381_1288	-	fibronectin type III domain-containing protein
1218	 31.94	0	1227560..1228633	-	357	154148379	-	CHAB381_1289	-	RluA family pseudouridine synthase
1219	 32.97	0	1228654..1229754	+	366	154149191	-	CHAB381_1290	-	cell cycle protein
1220	 32.79	0	1229774..1230142	-	122	154149367	-	CHAB381_1291	-	HIT family protein
1221	 35.74	0	1230233..1231312	-	359	154148378	serC	CHAB381_1292	-	phosphoserine aminotransferase
1222	 34.45	0	1231322..1232485	-	387	154148736	xseA	CHAB381_1293	-	exodeoxyribonuclease VII large subunit
1223	 33.89	0	1232556..1233272	-	238	154147990	-	CHAB381_1294	-	ubiquinone/menaquinone biosynthesis methyltransferase
1224	 24.83	-1	1233272..1234471	-	399	154149183	-	CHAB381_1295	-	hypothetical protein
31.82	MEAN

5.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.