IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
848	 41.88	0	912662..913246	-	194	157165757	-	CCC13826_1333	-	NUDIX family hydrolase
849	 43.27	0	913231..914598	-	455	157165418	mgtE	CCC13826_1332	-	magnesium transporter
850	 40.34	0	914608..915777	-	389	157164560	-	CCC13826_1331	-	M23 peptidase domain-containing protein
851	 41.49	0	915892..916614	+	240	157163941	-	CCC13826_1330	-	hypothetical protein
852	 39.78	0	916618..917439	+	273	157165667	moeA	CCC13826_1329	-	putative molybdopterin biosynthesis protein
853	 40.82	0	917514..918542	-	342	157165143	-	CCC13826_1328	-	hypothetical protein
854	 40.80	0	918523..919245	-	240	157164825	-	CCC13826_1327	-	Ser/Thr protein phosphatase family protein
855	 45.80	+1	919372..920847	-	491	157165518	-	CCC13826_1326	-	elongation factor P (EF-P)
856	 37.61	0	920974..922143	-	389	157164130	-	CCC13826_1325	-	hypothetical protein
857	 39.97	0	922136..922798	-	220	157164687	-	CCC13826_1324	-	extracellular solute-binding protein
858	 35.95	0	922808..923113	-	101	157165219	pyk	CCC13826_1323	-	pyruvate kinase
859	 41.28	0	923177..924082	-	301	157165738	-	CCC13826_1322	-	auxin efflux carrier (AEC) family protein
860	 33.67	-1	924177..925937	-	586	157164551	ompR	CCC13826_0026	-	response regulator
861	 28.11	-2	926492..927085	-	197	157165023	-	CCC13826_0025	-	hypothetical protein
862	 33.78	-1	927078..928199	-	373	157164143	-	CCC13826_0024	-	recombination protein RecR
863	 42.59	0	928277..928492	-	71	157164171	-	CCC13826_0023	-	anthranilate synthase component II
864	 38.61	0	929815..930117	-	100	157164945	-	CCC13826_0021	-	DNA-binding protein HU 1 (DNA-binding protein II; HB)
865	 30.51	-1	933479..933655	-	58	157163945	-	CCC13826_1301	-	hypothetical protein
866	 42.46	0	933624..935693	+	689	157165698	-	CCC13826_1302	-	FtsK/SpoIIIE family protein
867	 34.93	0	935728..936480	+	250	157165291	-	CCC13826_1303	-	hypothetical protein
868	 37.40	0	937147..937269	+	40	157165474	-	CCC13826_2247	-	hypothetical protein
869	 28.57	-2	937483..937692	+	69	157165041	-	CCC13826_1200	-	hypothetical protein
870	 25.81	-2	937689..937967	+	92	157164377	-	CCC13826_1201	-	addiction module antidote protein
871	 27.56	-2	938283..938750	-	155	157164470	-	CCC13826_1203	-	two-component regulator
872	 22.36	-2	938747..938983	-	78	157164902	-	CCC13826_1204	-	SNF7 family protein
873	 34.03	0	939158..939586	+	142	157164715	-	CCC13826_1205	-	hypothetical protein
874	 39.64	0	939681..939902	+	73	157164897	-	CCC13826_1206	-	hypothetical protein
875	 33.33	-1	940179..940298	+	39	157165449	-	CCC13826_2248	-	hypothetical protein
876	 33.33	-1	940312..940431	+	39	157164053	ahpC	CCC13826_2249	-	alkyl hydroperoxide reductase
877	 33.49	-1	941167..941817	+	216	157165120	-	CCC13826_1208	-	3-oxoacyl-[acyl-carrier-protein] synthase 3
878	 30.22	-1	941821..942237	+	138	157165674	plsX	CCC13826_1209	-	fatty acid/phospholipid synthesis protein
879	 28.71	-1	942241..943365	+	374	157164212	-	CCC13826_1210	-	hypothetical protein
880	 32.37	-1	943316..944458	+	380	157163960	-	CCC13826_1211	-	type II and III secretion system protein
881	 33.04	-1	944687..946027	+	446	157165145	-	CCC13826_1212	-	nucleoside diphosphate kinase (NDK; NDP kinase; nucleoside-2-P kinase)
882	 27.10	-2	946035..946901	+	288	157164811	-	CCC13826_1213	-	ferredoxin, 4Fe-4S
883	 41.44	0	947318..947749	-	143	157165203	-	CCC13826_1216	-	excinuclease ABC subunit A
884	 39.23	0	947801..948682	-	293	157164756	walN	CCC13826_1217	-	WalN protein
885	 42.69	0	948813..950351	+	512	157163864	-	CCC13826_1218	-	phosphate transporter family protein
886	 43.87	0	950534..951757	+	407	157165398	argG	CCC13826_1219	-	argininosuccinate synthase
887	 40.94	0	951781..952227	+	148	157164966	rplI	CCC13826_1220	-	ribosomal protein L9
888	 42.88	0	952228..952761	+	177	157164513	rplU	CCC13826_1221	-	ATP-dependent protease peptidase subunit
889	 42.86	0	952770..954092	+	440	157165582	hslU	CCC13826_1222	-	ATP-dependent protease ATP-binding subunit
890	 37.47	0	954089..954958	+	289	157165568	era	CCC13826_1223	-	GTP-binding protein Era
891	 32.08	-1	955019..956539	+	506	157163937	dcuA	CCC13826_1224	-	anaerobic C4-dicarboxylate transporter DcuA
892	 31.17	-1	956536..957183	+	215	157164423	-	CCC13826_1225	-	hypothetical protein
893	 32.60	-1	957183..957593	+	136	157165267	-	CCC13826_1226	-	hypothetical protein
894	 37.98	0	957571..959097	+	508	157163858	-	CCC13826_1227	-	PP family ATPase
895	 33.94	0	959090..959917	+	275	157164200	-	CCC13826_1228	-	phosphoribosylaminoimidazole carboxylase
896	 34.93	0	959910..960785	+	291	157164658	-	CCC13826_1229	-	hypothetical protein
897	 31.85	-1	960782..961321	+	179	157165545	-	CCC13826_1230	-	hypothetical protein
898	 38.30	0	961321..963072	+	583	157164141	-	CCC13826_1231	-	L(+)-tartrate dehydratase subunit beta (L-TTD beta)
899	 38.59	0	963069..964304	+	411	157164422	-	CCC13826_1232	-	transcription regulator AsnC
900	 35.33	0	964332..964832	+	166	157165744	-	CCC13826_1233	-	methyl-accepting chemotaxis protein
901	 39.06	0	964834..966090	+	418	157165447	-	CCC13826_1234	-	methyl-accepting chemotaxis protein
902	 43.50	0	969224..969469	+	81	157165018	hemE	CCC13826_1237	-	uroporphyrinogen decarboxylase
903	 41.85	0	969469..969867	+	132	157165689	-	CCC13826_1238	-	hypothetical protein
904	 43.07	0	969860..970588	+	242	157164499	-	CCC13826_1239	-	ABC-transporter ATP-binding protein
905	 41.15	0	970589..971842	+	417	157163900	rpoN	CCC13826_1240	-	RNA polymerase factor sigma-54
906	 39.39	0	971843..972601	-	252	157165327	-	CCC13826_1241	-	hypothetical protein
907	 37.14	0	972718..973452	+	244	157164889	-	CCC13826_1243	-	hypothetical protein
908	 39.00	0	973444..974466	-	340	157164951	murG	CCC13826_1242	-	N-acetylglucosaminyl transferase
909	 44.25	0	974463..975635	-	390	157164714	-	CCC13826_1244	-	cell cycle protein FtsW
910	 39.16	0	975715..976503	+	262	157164289	murI	CCC13826_1245	-	glutamate racemase
911	 41.15	0	977321..978100	-	259	157165101	-	CCC13826_1247	-	nlpa lipoprotein
912	 41.19	0	979218..979892	-	224	157165329	-	CCC13826_1249	-	putative ABC transporter, permease protein
913	 40.23	0	979892..980848	-	318	157165099	-	CCC13826_1250	-	methionine import ATP-binding protein MetN
914	 48.63	+1	980881..981867	-	328	157164655	-	CCC13826_1251	-	diaminopimelate dehydrogenase
915	 42.66	0	982009..984765	-	918	157164498	valS	CCC13826_1252	-	valyl-tRNA synthetase
916	 36.84	0	984798..984911	+	37	157165558	-	CCC13826_2252	-	hypothetical protein
917	 39.58	0	984887..990010	-	1707	157164622	-	CCC13826_1253	-	alpha-2-macroglobulin family protein
918	 38.96	0	990012..992180	-	722	157163917	-	CCC13826_1254	-	flagellar P-ring protein (basal body P-ring protein)
919	 41.99	0	992246..994279	+	677	157163928	-	CCC13826_1255	-	putative site-specific DNA methyltransferase
920	 42.46	0	994333..995526	+	397	157164385	-	CCC13826_1256	-	membrane fusion protein (MFP) family auxiliary transport protein
921	 43.96	0	995527..997455	+	642	157165296	-	CCC13826_1257	-	macrolide export ATP-binding/permease protein MacB
922	 39.42	0	997457..998803	+	448	157165728	-	CCC13826_1258	-	putative flagellar hook-associated protein 2
923	 39.23	0	998808..999299	+	163	157164199	fliS	CCC13826_1259	-	flagellar protein
924	 21.60	-2	999832..999993	+	53	157164786	-	CCC13826_1260	-	hypothetical protein
925	 36.35	0	1000035..1000532	-	165	157165290	-	CCC13826_1261	-	phosphoglycerate mutase family protein
926	 40.59	0	1000529..1001341	-	270	157164584	-	CCC13826_1262	-	hypothetical protein
927	 37.85	0	1001328..1001903	-	191	157165578	-	CCC13826_1263	-	peptidase E
928	 37.15	0	1001887..1002567	-	226	157164046	-	CCC13826_1264	-	hypothetical protein
929	 45.94	+1	1002706..1003974	+	422	157164419	murA	CCC13826_1265	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
930	 41.52	0	1003977..1005137	+	386	157164837	-	CCC13826_1266	-	MoeA domain-containing protein
931	 36.93	0	1005328..1006134	+	268	157165005	-	CCC13826_1268	-	flagellar basal body P-ring biosynthesis protein FlgA
932	 44.38	0	1006131..1006682	+	183	157165444	-	CCC13826_1269	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
933	 43.31	0	1006679..1007149	+	156	157165743	coaD	CCC13826_1270	-	phosphopantetheine adenylyltransferase
934	 37.07	0	1007151..1007738	+	195	157165350	tmk	CCC13826_1271	-	thymidylate kinase
935	 42.71	0	1007768..1008994	+	408	157165317	hisS	CCC13826_1272	-	histidyl-tRNA synthetase
936	 42.43	0	1008991..1010826	+	611	157165425	speA	CCC13826_1273	-	arginine decarboxylase
937	 43.34	0	1010838..1012016	+	392	157164956	-	CCC13826_1274	-	aspartate aminotransferase
938	 37.25	0	1012016..1012219	+	67	157164798	thiS	CCC13826_1275	-	thiamine biosynthesis protein ThiS
939	 44.37	0	1012227..1013078	+	283	157163881	thiF	CCC13826_1276	-	thiamine biosynthesis protein ThiF
940	 44.68	+1	1013843..1014997	+	384	157165154	thiH	CCC13826_1278	-	thiamine biosynthesis protein ThiH
941	 39.84	0	1014990..1015604	+	204	157164124	-	CCC13826_1279	-	thiamine monophosphate synthase
942	 43.46	0	1015706..1020406	-	1566	157164674	-	CCC13826_1280	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
943	 44.06	0	1020726..1021583	-	285	157164881	-	CCC13826_1281	-	hypothetical protein
944	 42.96	0	1021586..1022551	-	321	157165688	-	CCC13826_1282	-	O-acetylhomoserine (thiol)-lyase
945	 46.17	+1	1022561..1024399	-	612	157164353	-	CCC13826_1283	-	succinate dehydrogenase flavoprotein subunit
946	 21.21	-2	1024626..1024757	+	43	157163921	-	CCC13826_1284	-	hypothetical protein
947	 38.86	0	1024799..1025812	-	337	157165166	-	CCC13826_1285	-	periplasmic binding protein
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.