IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
699	 28.27	-2	758509..758745	-	78	157164893	-	CCC13826_0652	-	hypothetical protein
700	 33.00	-1	759004..759303	-	99	157165341	-	CCC13826_0651	-	hypothetical protein
701	 41.72	0	759902..760843	+	313	157165374	-	CCC13826_0649	-	DNA primase
702	 26.98	-2	760835..760960	-	41	157164924	-	CCC13826_2242	-	putative periplasmic protein
703	 43.11	0	760931..762997	+	688	157164067	-	CCC13826_0648	-	N-carbamoyl-L-amino acid hydrolase (L-carbamoylase)
704	 41.36	0	763092..763577	-	161	157164482	-	CCC13826_0647	-	Hsp12 variant C
705	 37.10	0	763648..764310	-	220	157164014	-	CCC13826_0646	-	hypothetical protein
706	 44.92	+1	764286..765605	-	439	157165415	dcuC	CCC13826_0645	-	DcuC protein
707	 42.08	0	765702..767633	+	643	157164849	-	CCC13826_0644	-	peptidase T (tripeptide aminopeptidase; aminotripeptidase; tripeptidase)
708	 31.26	-1	767635..768069	+	144	157164807	-	CCC13826_0643	-	hypothetical protein
709	 41.53	0	768146..769657	+	503	157164242	-	CCC13826_0642	-	hypothetical protein
710	 42.67	0	769657..771102	+	481	157165661	-	CCC13826_0641	-	hypothetical protein
711	 45.34	+1	771229..773169	+	646	157164537	-	CCC13826_1610	-	hypothetical protein
712	 43.30	0	773537..774910	+	457	157164031	-	CCC13826_1611	-	sodium/neurotransmitter symporter family protein
713	 41.38	0	774914..776032	+	372	157165437	-	CCC13826_1612	-	prophage protein gp49
714	 40.65	0	776041..777243	+	400	157165245	-	CCC13826_1613	-	XRE family transcriptional regulator
715	 43.81	0	778519..779301	+	260	157164295	-	CCC13826_1616	-	hypothetical protein
716	 42.83	0	779294..779809	+	171	157165690	-	CCC13826_1617	-	hypothetical protein
717	 37.18	0	779830..780219	+	129	157165439	-	CCC13826_1618	-	thioesterase family protein
718	 38.56	0	780232..781512	-	426	157164863	-	CCC13826_1619	-	hypothetical protein
719	 30.28	-1	781509..782162	-	217	157164524	-	CCC13826_1620	-	uracil-DNA glycosylase superfamily protein
720	 38.52	0	782286..782420	+	44	157163975	rpmH	CCC13826_2243	-	50S ribosomal protein L34
721	 31.72	-1	782558..782743	+	61	157165694	-	CCC13826_1621	-	hypothetical protein
722	 28.65	-2	782740..783081	+	113	157165305	-	CCC13826_1622	-	hypothetical protein
723	 37.07	0	783082..784635	+	517	157164729	-	CCC13826_1623	-	putative inner membrane protein translocase component YidC
724	 38.28	0	784635..785726	+	363	157165106	-	CCC13826_1624	-	hypothetical protein
725	 41.63	0	785723..787048	+	441	157164829	trmE	CCC13826_1625	-	tRNA modification GTPase TrmE
726	 43.13	0	787090..787671	+	193	157164238	-	CCC13826_1626	-	modulator of drug activity B
727	 35.83	0	787746..788465	+	239	157164027	-	CCC13826_1627	-	hypothetical protein
728	 43.81	0	790715..791764	+	349	157165196	-	CCC13826_1629	-	R2.LlaJI
729	 40.27	0	791766..792500	+	244	157165606	-	CCC13826_1630	-	silent information regulator protein Sir2
730	 37.57	0	792501..793067	+	188	157165182	-	CCC13826_1631	-	hypothetical protein
731	 45.27	+1	793098..794630	+	510	157165620	purH	CCC13826_1632	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
732	 43.23	0	794707..795747	+	346	157164923	-	CCC13826_1633	-	peptide methionine sulfoxide reductase family protein
733	 39.71	0	796161..797351	+	396	157164033	-	CCC13826_1635	-	peptidase M50
734	 45.12	+1	797357..797653	+	98	157164371	-	CCC13826_1375	-	YitW
735	 40.96	0	797927..799066	-	379	157165230	ftsZ	CCC13826_1374	-	cell division protein FtsZ
736	 35.87	0	799081..800499	-	472	157165758	ftsA	CCC13826_1086	-	cell division protein FtsA
737	 32.78	-1	800505..801962	-	485	157164574	-	CCC13826_1085	-	glutamate-1-semialdehyde 2,1-aminomutase
738	 35.88	0	802102..802689	-	195	157164611	-	CCC13826_1084	-	hypothetical protein
739	 39.50	0	802735..803739	+	334	157164915	mraW	CCC13826_1083	-	S-adenosyl-methyltransferase MraW
740	 34.01	0	803742..804035	+	97	157165361	-	CCC13826_1082	-	hypothetical protein
741	 35.44	0	804026..805975	+	649	157164225	-	CCC13826_1080	-	FlhB domain-containing protein
742	 34.52	0	805954..806460	-	168	157165760	-	CCC13826_1081	-	hypothetical protein
743	 41.64	0	806565..807431	+	288	157164644	-	CCC13826_1079	-	methyl-accepting chemotaxis sensory transducer
744	 39.86	0	807428..807871	+	147	157165033	-	CCC13826_1078	-	purine nucleoside phosphorylase
745	 37.17	0	807864..808358	+	164	157165306	-	CCC13826_1077	-	chemotaxis protein methyltransferase
746	 42.56	0	808355..810370	+	671	157164850	-	CCC13826_1076	-	DNA gyrase subunit A
747	 40.61	0	810371..811690	+	439	157164403	-	CCC13826_1075	-	hypothetical protein
748	 38.52	0	811687..812226	+	179	157163919	-	CCC13826_1074	-	putative periplasmic protein
749	 40.55	0	812254..812766	-	170	157165665	-	CCC13826_1073	-	outer-membrane lipoprotein carrier protein
750	 42.00	0	812864..815470	+	868	157165105	secA	CCC13826_1072	-	preprotein translocase subunit SecA
751	 41.00	0	815522..816721	+	399	157165025	-	CCC13826_1071	-	Rrf2 family protein
752	 37.50	0	817223..817486	-	87	157163894	-	CCC13826_1069	-	addiction module antitoxin
753	 36.08	0	817489..817743	-	84	157164214	-	CCC13826_1068	-	addiction module antitoxin
754	 41.64	0	817823..819448	-	541	157165634	-	CCC13826_1067	-	monovalent cation:proton antiporter-2 (CPA2) family protein
755	 35.47	0	819452..819826	-	124	157165189	czcD	CCC13826_1066	-	cation-efflux system membrane protein
756	 41.58	0	819830..820726	-	298	157164558	-	CCC13826_1065	-	DnaJ domain-containing protein
757	 40.88	0	820882..822285	+	467	157164029	-	CCC13826_1064	-	protease DO
758	 40.41	0	822383..823060	+	225	157164458	-	CCC13826_1063	-	response regulator receiver domain-containing protein
759	 38.24	0	823060..824301	+	413	157163896	-	CCC13826_1062	-	sensor histidine kinase
760	 36.76	0	824332..824769	+	145	157164299	-	CCC13826_1061	-	hypothetical protein
761	 37.50	0	824956..825099	-	47	157165567	-	CCC13826_1060	-	hypothetical protein
762	 36.11	0	825414..825593	+	59	157165260	-	CCC13826_1059	-	transformation system protein
763	 44.81	+1	825632..826903	-	423	157164414	-	CCC13826_1058	-	methyl-accepting chemotaxis protein
764	 33.33	-1	827011..827343	+	110	157164473	-	CCC13826_1057	-	hypothetical protein
765	 41.19	0	827340..827963	+	207	157164056	-	CCC13826_1056	-	putative periplasmic protein
766	 34.90	0	828012..828266	+	84	157165355	-	CCC13826_1055	-	hypothetical protein
767	 41.98	0	828286..828690	+	134	157164922	-	CCC13826_1053	-	hypothetical protein
768	 42.68	0	829594..830877	+	427	157165194	hemA	CCC13826_1051	-	glutamyl-tRNA reductase
769	 44.74	+1	830867..832567	+	566	157165397	proS	CCC13826_1050	-	prolyl-tRNA synthetase
770	 38.19	0	832564..832995	+	143	157164329	-	CCC13826_1049	-	hypothetical protein
771	 46.24	+1	833004..833933	+	309	157164515	hemC	CCC13826_1048	-	porphobilinogen deaminase
772	 39.32	0	833936..834286	+	116	157164814	-	CCC13826_1047	-	putative putative periplasmic protein
773	 41.63	0	834601..835323	-	240	157164624	-	CCC13826_1046	-	NC domain-containing protein
774	 47.54	+1	835512..837320	+	602	157164959	-	CCC13826_1045	-	putative periplasmic protein
775	 27.45	-2	837623..837775	-	50	157165711	-	CCC13826_1044	-	CmeU
776	 38.73	0	838162..839181	-	339	157164202	-	CCC13826_1043	-	hypothetical protein
777	 42.58	0	839245..840066	+	273	157164313	-	CCC13826_1042	-	thiamine monophosphate kinase
778	 41.78	0	840044..841168	+	374	157164757	truD	CCC13826_1041	-	tRNA pseudouridine synthase D
779	 39.29	0	841402..842022	-	206	157165490	-	CCC13826_1040	-	S51 family peptidase
780	 38.61	0	842481..844451	-	656	157165044	-	CCC13826_1039	-	protease htpx
781	 20.63	-2	844553..844678	+	41	157164616	-	CCC13826_1038	-	hypothetical protein
782	 35.53	0	845393..845620	-	75	157164186	-	CCC13826_1037	-	hypothetical protein
783	 36.36	0	845613..845909	-	98	157164351	fliS	CCC13826_1036	-	flagellar protein FliS
784	 39.86	0	845994..847754	-	586	157164912	-	CCC13826_1035	-	flagellar capping protein
785	 40.91	0	847757..848152	-	131	157164223	flaG	CCC13826_1034	-	flagellar protein FlaG
786	 36.81	0	848272..848616	+	114	157164781	-	CCC13826_1033	-	ornithine carbamoyltransferase (OTCase)
787	 38.45	0	848613..849179	+	188	157164018	-	CCC13826_1032	-	putative methyltransferase
788	 43.11	0	849236..850288	+	350	157165414	flgI	CCC13826_1031	-	flagellar basal body P-ring protein
789	 35.33	0	850288..850587	+	99	157165455	-	CCC13826_1030	-	hypothetical protein
790	 36.98	0	850658..850849	+	63	157165015	-	CCC13826_1029	-	hypothetical protein
791	 38.43	0	850866..851297	+	143	157165167	-	CCC13826_1028	-	hypothetical protein
792	 40.76	0	851301..853172	+	623	157164728	flgK	CCC13826_0708	-	flagellar hook-associated protein FlgK
793	 37.76	0	853169..853936	+	255	157165731	-	CCC13826_0709	-	hypothetical protein
794	 46.74	+1	854003..854539	+	178	157165326	sodC	CCC13826_0161	-	copper/zinc superoxide dismutase
795	 41.34	0	854684..855445	+	253	157164354	-	CCC13826_0160	-	hypothetical protein
796	 40.50	0	855511..856194	+	227	157164001	atpB	CCC13826_0159	-	F0F1 ATP synthase subunit A
797	 43.89	0	857124..858506	-	460	157164157	-	CCC13826_0157	-	cytosine/purines/uracil/thiamine/allantoin family permease
798	 43.84	0	861041..862096	+	351	157165607	-	CCC13826_0154	-	glycoside hydrolase family 3 protein
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.