IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
294	 43.93	0	309547..310839	+	430	157165412	-	CCC13826_0766	-	ABC transport permease protein-involved in lipoprotein release
295	 40.33	0	310826..311968	+	380	157164311	-	CCC13826_0767	-	integral membrane protein-permease component, involved in lipoprotein release
296	 43.62	0	311970..312659	+	229	157164544	-	CCC13826_0768	-	response regulatory protein
297	 41.41	0	312649..313143	+	164	157164992	-	CCC13826_0769	-	thioredoxin family protein
298	 41.07	0	313153..313734	+	193	157165554	-	CCC13826_0770	-	hypothetical protein
299	 34.29	0	313766..315016	+	416	157164614	cynT	CCC13826_0771	-	carbonic anyhydrase
300	 41.57	0	315072..317438	-	788	157165202	-	CCC13826_0772	-	integral membrane protein
301	 44.98	+1	317438..318682	-	414	157165746	serS	CCC13826_0773	-	seryl-tRNA synthetase
302	 42.40	0	318704..319144	-	146	157165208	secG	CCC13826_0774	-	protein translocation protein, low temperature
303	 46.27	+1	319153..320118	-	321	157164791	trpS	CCC13826_0775	-	tryptophanyl-tRNA synthetase
304	 40.42	0	320826..321347	-	173	157164600	aroK	CCC13826_0776	-	shikimate kinase
305	 43.84	0	321328..322716	-	462	157165129	-	CCC13826_0777	-	GTP-binding protein EngA
306	 41.08	0	322869..323759	+	296	157165602	-	CCC13826_0778	-	hypothetical protein
307	 43.45	0	323770..324570	+	266	157164076	kdsA	CCC13826_0779	-	2-dehydro-3-deoxyphosphooctonate aldolase
308	 40.00	0	324656..325105	+	149	157164725	-	CCC13826_0780	-	hypothetical protein
309	 41.98	0	325436..325759	+	107	157163927	-	CCC13826_0782	-	methionyl-tRNA formyltransferase
310	 46.28	+1	325806..326276	+	156	157164346	ribH	CCC13826_0783	-	riboflavin synthase subunit beta
311	 41.67	0	326278..326673	+	131	157163972	nusB	CCC13826_0784	-	transcription antitermination protein NusB
312	 31.99	-1	328022..328468	+	148	157165346	rplW	CCC13826_0788	-	50S ribosomal protein L23
313	 50.98	+2	330220..330423	-	67	157165512	-	CCC13826_0790	-	chain A, Nikr in Open conformation and nickel bound to high-affinity Sites
314	 37.33	0	332780..333805	-	341	157165736	soj	CCC13826_0794	-	SpoOJ regulator
315	 40.26	0	333861..335579	+	572	157165046	dnaG	CCC13826_0795	-	DNA primase
316	 45.15	+1	336919..338238	+	439	157165081	-	CCC13826_0797	-	aminobenzoyl-glutamate utilization protein A
317	 40.49	0	338235..338933	+	232	157164766	-	CCC13826_0798	-	peptidase E
318	 42.32	0	340268..341491	+	407	157164794	pepT	CCC13826_0800	-	peptidase T
319	 44.00	0	341566..342540	+	324	157164253	ylxH	CCC13826_0801	-	ATP-binding protein
320	 34.15	0	342644..342766	+	40	157165435	-	CCC13826_0802	-	periplasmic binding protein
321	 36.60	0	343165..343929	+	254	157165009	-	CCC13826_0803	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
322	 34.30	0	344716..346671	+	651	157164557	pepQ	CCC13826_0804	-	prolidase (Xaa-Pro dipeptidase; PepQ)
323	 34.17	0	346809..348008	+	399	157164131	-	CCC13826_0805	-	3-dehydroquinate dehydratase (3-dehydroquinase; type iidhqase)
324	 37.45	0	348427..348693	+	88	157165762	-	CCC13826_0806	-	prophage protein gp49
325	 32.63	-1	348690..348974	+	94	157164380	-	CCC13826_0807	-	helix-turn-helix domain-containing protein
326	 36.11	0	349168..351186	-	672	157164659	-	CCC13826_0165	-	AAA ATPase, central region
327	 40.12	0	351318..352598	-	426	157165232	-	CCC13826_0810	-	hypothetical protein
328	 38.80	0	352641..353537	-	298	157164069	-	CCC13826_0811	-	hypothetical protein
329	 31.28	-1	353622..354206	-	194	157164608	-	CCC13826_0812	-	hypothetical protein
330	 28.61	-2	354267..355601	-	444	157164926	panB	CCC13826_0813	-	ketopantoate hydroxymethyltransferase
331	 37.39	0	355612..356868	-	418	157165448	-	CCC13826_0814	-	hypothetical protein
332	 39.46	0	356883..357470	-	195	157164302	-	CCC13826_0815	-	hypothetical protein
333	 38.62	0	357605..358399	+	264	157164577	amaA	CCC13826_0816	-	acid membrane antigen A
334	 30.95	-1	358417..359172	-	251	157165074	-	CCC13826_0817	-	hypothetical protein
335	 32.10	-1	359324..359566	+	80	157165004	-	CCC13826_0818	-	hypothetical protein
336	 29.31	-1	359563..360729	+	388	157164246	-	CCC13826_0819	-	modification methylase HaeIII (cytosine-specificmethyltransferase HaeIII; M.HaeIII)
337	 26.80	-2	360739..362208	+	489	157164649	-	CCC13826_0820	-	putative two-component sensor
338	 28.55	-2	362264..362890	+	208	157164857	-	CCC13826_0821	-	two component transcriptional regulator
339	 30.10	-1	362887..364125	+	412	157165780	-	CCC13826_0822	-	polysulfide reductase chain C (sulfur reductase chain C)
340	 28.79	-1	364199..365386	+	395	157164438	-	CCC13826_0824	-	hypothetical protein
341	 28.22	-2	365367..365972	-	201	157163860	-	CCC13826_0823	-	hypothetical protein
342	 43.10	0	366244..367062	+	272	157164501	-	CCC13826_0825	-	anaerobic C4-dicarboxylate transporter DcuA
343	 42.81	0	367116..368033	+	305	157165348	aspA	CCC13826_0826	-	aspartate ammonia-lyase
344	 41.77	0	368048..368296	+	82	157165385	-	CCC13826_0827	-	protein TonB
345	 32.20	-1	368468..369175	-	235	157164092	-	CCC13826_0828	-	biopolymer transport ExbD protein
346	 33.99	0	369944..370246	+	100	157164505	-	CCC13826_0945	-	hypothetical protein
347	 32.48	-1	370299..370769	+	156	157165199	-	CCC13826_0946	-	hypothetical protein
348	 29.20	-1	370922..371284	+	120	157165184	atoS	CCC13826_0947	-	signal-transducing protein, histidine kinase
349	 32.72	-1	371274..373724	+	816	157164441	-	CCC13826_0949	-	aminotransferase
350	 34.85	0	373698..374027	-	109	157165608	-	CCC13826_0948	-	ATPase
351	 33.48	-1	374099..375454	-	451	157164722	thiD	CCC13826_0950	-	phosphomethylpyrimidine kinase
352	 31.53	-1	375752..377524	+	590	157164852	-	CCC13826_0951	-	thiamine-phosphate pyrophosphorylase
353	 33.33	-1	377505..378830	+	441	157164216	-	CCC13826_0952	-	hypothetical protein
354	 33.15	-1	379223..380851	+	542	157165240	-	CCC13826_0953	-	hypothetical protein
355	 30.35	-1	380993..381562	+	189	157165584	-	CCC13826_0954	-	GTP-binding protein
356	 22.96	-2	382323..382457	+	44	157164158	-	CCC13826_0955	-	putative ATP
357	 44.00	0	382675..383733	-	352	157163978	-	CCC13826_0957	-	metal-activated pyridoxal enzyme
358	 44.72	+1	383867..385069	+	400	157164015	-	CCC13826_0958	-	trimethylamine-n-oxide reductase 1 (tmaoreductase 1; trimethylamine oxidase 1)
359	 35.34	0	385111..388350	-	1079	157165176	-	CCC13826_0959	-	hypothetical protein
360	 25.69	-2	389094..389237	-	47	157164300	-	CCC13826_0961	-	hypothetical protein
361	 28.68	-1	389238..389903	-	221	157164303	-	CCC13826_0962	-	hypothetical protein
362	 43.60	0	390018..391079	-	353	157165273	-	CCC13826_0963	-	CjaC
363	 45.45	+1	391172..392623	+	483	157164006	pyk	CCC13826_0964	-	pyruvate kinase
364	 43.92	0	393506..394648	-	380	157165410	dnaJ	CCC13826_0965	-	chaperone protein DnaJ
365	 18.70	-2	394657..394779	+	40	157165091	-	CCC13826_2226	-	hypothetical protein
366	 38.69	0	394772..395443	+	223	157165656	-	CCC13826_0966	-	His/Glu/Gln/Arg/opine amino acid ABC transporter permease
367	 41.69	0	395440..396696	+	418	157163989	putP	CCC13826_0967	-	proline permease
368	 44.68	+1	396693..397265	+	190	157164121	recR	CCC13826_0968	-	recombination protein RecR
369	 44.34	0	397349..398965	+	538	157164235	-	CCC13826_0969	-	anthranilate synthase/para-aminobenzoate synthase glutamine amidotransferase subunit
370	 41.79	0	398952..399566	+	204	157165676	trpF	CCC13826_0970	-	N-(5'phosphoribosyl)anthranilate isomerase
371	 48.22	+1	399556..400737	+	393	157164360	trpB	CCC13826_0972	-	tryptophan synthase subunit beta
372	 42.40	0	400730..401479	+	249	157165000	trpA	CCC13826_0973	-	tryptophan synthase subunit alpha
373	 35.48	0	401557..401976	+	139	157165750	-	CCC13826_0974	-	Mrr restriction system protein (EcoKMrr)
374	 36.79	0	401973..402290	+	105	157164107	fliN	CCC13826_0975	-	flagellar motor switch protein
375	 36.75	0	402287..403165	+	292	157163901	-	CCC13826_0976	-	hypothetical protein
376	 31.25	-1	403185..403328	-	47	157164434	-	CCC13826_0977	-	fumarate reductase flavoprotein subunit
377	 40.92	0	404145..405593	-	482	157164963	frdC	CCC13826_0978	-	fumarate reductase
378	 38.98	0	405597..406817	-	406	157165522	-	CCC13826_0979	-	prolipoprotein diacylglyceryl transferase
379	 40.48	0	406853..407524	-	223	157164291	-	CCC13826_0980	-	response regulator receiver domain-containing protein
380	 34.56	0	407601..407927	-	108	157164726	folB	CCC13826_0981	-	dihydroneopterin aldolase
381	 42.48	0	407924..408535	-	203	157164453	-	CCC13826_0982	-	putative glycerol-3-phosphate acyltransferase PlsY
382	 41.81	0	408595..410883	-	762	157165103	-	CCC13826_0983	-	hypothetical protein
383	 40.72	0	410892..411974	-	360	157164559	-	CCC13826_0984	-	type IV pilus assembly protein PilZ
384	 43.83	0	412097..412696	-	199	157164012	-	CCC13826_0985	-	2-cys peroxiredoxin BAS1, (Thiol-specific antioxidant protein)
385	 41.89	0	412894..413898	-	334	157165417	-	CCC13826_0986	-	3-oxoacyl-(acyl carrier protein) synthase III
386	 39.39	0	413902..414891	-	329	157164231	plsX	CCC13826_0987	-	putative glycerol-3-phosphate acyltransferase PlsX
387	 40.82	0	414895..415041	-	48	157164792	rpmF	CCC13826_0988	-	50S ribosomal protein L32
388	 30.00	-1	415053..415412	-	119	157164284	-	CCC13826_0989	-	hypothetical protein
389	 37.68	0	415427..415840	-	137	157163948	-	CCC13826_0990	-	nucleoside diphosphate kinase (NDK; NDP kinase; nucleoside-2-P kinase)
390	 47.02	+1	415943..416227	-	94	157165682	-	CCC13826_0991	-	CDP-diacylglycerol--serine O-phosphatidyltransferase (phosphatidylserine synthase)
391	 43.83	0	416401..419229	+	942	157165157	uvrA	CCC13826_0992	-	excinuclease ABC subunit A
392	 34.16	0	419275..420357	+	360	157164102	-	CCC13826_0993	-	putative cell division protease FtsH-like protein
393	 29.73	-1	420354..421628	+	424	157164639	-	CCC13826_0994	-	ribosomal protein L11 methyltransferase (L11 Mtase)
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.