IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1830	 35.86	0	1928890..1929126	+	78	157163915	-	CCC13826_0306	-	hypothetical protein
1831	 40.71	0	1929123..1929461	+	112	157164418	-	CCC13826_0305	-	hypothetical protein
1832	 37.33	0	1929738..1929887	+	49	157165211	-	CCC13826_0304	-	heat-inducible transcription repressor HrcA
1833	 35.90	0	1929875..1930381	+	168	157165753	-	CCC13826_0303	-	co-chaperone protein GrpE
1834	 42.20	0	1930335..1931789	+	484	157165560	dnaK	CCC13826_0302	-	chaperone and heat shock protein 70
1835	 43.11	0	1931834..1932058	+	74	157164646	-	CCC13826_0301	-	metallo-beta-lactamase family protein
1836	 45.95	+1	1932097..1932318	+	73	157164428	-	CCC13826_0300	-	NH(3)-dependent NAD(+) synthetase
1837	 35.36	0	1932752..1933492	+	246	157165010	-	CCC13826_0299	-	spore coat polysaccharide biosynthesis protein spsC-like protein
1838	 43.02	0	1933574..1934698	+	374	157165340	-	CCC13826_0298	-	PepSY-associated TM helix family protein
1839	 45.85	+1	1934770..1935792	+	340	157164305	-	CCC13826_0297	-	ribonucleotide-diphosphate reductase subunit beta
1840	 42.48	0	1935782..1936273	+	163	157165293	-	CCC13826_0296	-	hypothetical protein
1841	 45.18	+1	1936274..1937041	+	255	157164556	-	CCC13826_0295	-	nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1842	 45.47	+1	1937084..1937734	+	216	157164175	pcm	CCC13826_0294	-	protein-L-isoaspartate O-methyltransferase
1843	 40.58	0	1937752..1938234	-	160	157165416	-	CCC13826_0293	-	hypothetical protein
1844	 38.80	0	1938364..1938948	-	194	157164835	-	CCC13826_0292	-	hypothetical protein
1845	 36.99	0	1939117..1939335	+	72	157164504	-	CCC13826_0291	-	hypothetical protein
1846	 36.05	0	1939362..1939655	-	97	157164058	-	CCC13826_0290	-	polyphosphate kinase 2
1847	 31.71	-1	1939690..1939812	-	40	157165334	-	CCC13826_0289	-	hypothetical protein
1848	 37.41	0	1939851..1940438	-	195	157164886	-	CCC13826_0288	-	putative outer membrane protein
1849	 43.59	0	1940598..1942205	-	535	157165222	recJ	CCC13826_0910	-	single-stranded-DNA-specific exonuclease RecJ
1850	 34.96	0	1942162..1942284	-	40	157165404	-	CCC13826_0909	-	hypothetical protein
1851	 44.22	0	1942487..1944121	-	544	157164699	pyrG	CCC13826_0908	-	CTP synthetase
1852	 29.24	-1	1944211..1944381	-	56	157164279	-	CCC13826_0907	-	transglutaminase family protein
1853	 41.02	0	1944465..1946000	+	511	157165133	-	CCC13826_0906	-	ubiquinol oxidase
1854	 41.24	0	1945993..1947117	+	374	157165621	cydB	CCC13826_0905	-	cytochrome D ubiquinol oxidase, subunit II
1855	 36.77	0	1947225..1947893	-	222	157165516	-	CCC13826_0904	-	hypothetical protein
1856	 27.48	-2	1948119..1949228	+	369	157163984	-	CCC13826_0903	-	hypothetical protein
1857	 26.38	-2	1949239..1949799	-	186	157164402	-	CCC13826_0902	-	foldase protein PrsA
1858	 44.14	0	1950110..1951876	+	588	157164826	-	CCC13826_0901	-	fructose-bisphosphate aldolase
1859	 32.48	-1	1951913..1952263	-	116	157165641	-	CCC13826_0900	-	hypothetical protein
1860	 38.66	0	1952330..1967572	-	5080	157164648	-	CCC13826_0899	-	large repetitive protein
1861	 39.52	0	1972434..1973840	-	468	157165552	-	CCC13826_0016	-	hypothetical protein
1862	 41.62	0	1974013..1977234	-	1073	157163916	-	CCC13826_0015	-	hypothetical protein
1863	 21.28	-2	1977341..1977481	+	46	157164378	-	CCC13826_0014	-	hypothetical protein
1864	 45.51	+1	1977596..1978630	+	344	157164983	-	CCC13826_0013	-	putative phage integrase
1865	 47.57	+1	1978649..1980397	+	582	157165359	ilvD	CCC13826_0012	-	dihydroxy-acid dehydratase
1866	 45.03	+1	1980453..1981187	-	244	157163924	-	CCC13826_0011	-	phosphomethylpyrimidine kinase superfamily protein
1867	 38.73	0	1981273..1981809	-	178	157164222	-	CCC13826_0010	-	hypothetical protein
1868	 28.21	-2	1981886..1982002	+	38	157164486	-	CCC13826_0008	-	hypothetical protein
1869	 42.06	0	1986226..1989171	-	981	157164908	-	CCC13826_0007	-	putative lipoprotein
1870	 22.40	-2	1989443..1989625	-	60	157165380	-	CCC13826_0006	-	hypothetical protein
1871	 39.28	0	1989686..1990375	-	229	157164314	-	CCC13826_0005	-	response regulator receiver domain-containing protein
1872	 38.91	0	1990379..1992028	-	549	157164739	-	CCC13826_0004	-	His kinase A
1873	 46.54	+1	1992076..1992696	-	206	157165175	ttrA	CCC13826_0003	-	putative disulfide oxidoreductase
1874	 42.62	0	1992705..1993361	-	218	157165622	xerC	CCC13826_0002	-	integrase/recombinase
1875	 30.37	-1	1993500..1993769	-	89	157164073	-	CCC13826_0001	-	addiction module antitoxin
1876	 34.34	0	1993762..1993959	-	65	157164507	-	CCC13826_2334	-	hypothetical protein
1877	 43.88	0	1994096..1994740	+	214	157164883	-	CCC13826_1910	-	enolase (2-phosphoglycerate dehydratase; 2-phospho-D-glycerate hydro-lyase)
1878	 35.74	0	1994853..1995143	+	96	157164848	-	CCC13826_1909	-	hypothetical protein
1879	 35.06	0	1995182..1995412	-	76	157165452	-	CCC13826_1908	-	hypothetical protein
1880	 43.49	0	1995409..1995969	-	186	157164173	-	CCC13826_1907	-	general stress protein 14 (GSP14)
1881	 48.22	+1	1995985..1997529	-	514	157164599	-	CCC13826_1906	-	flagellar biosynthetic protein FliQ
1882	 41.41	0	1997563..1998243	-	226	157164126	-	CCC13826_1905	-	antibiotic biosynthesis monooxygenase domain-containing protein
1883	 39.22	0	1998257..1998766	-	169	157164601	-	CCC13826_1904	-	hypothetical protein
1884	 45.30	+1	1998817..2000253	-	478	157164369	pncB	CCC13826_1903	-	nicotinate phosphoribosyltransferase
1885	 44.36	0	2000293..2001063	-	256	157165677	-	CCC13826_1902	-	putative molybdenum ABC transporter, periplasmic binding protein
1886	 43.61	0	2001060..2001701	-	213	157165479	-	CCC13826_1901	-	oxidoreductase htatip2
1887	 45.29	+1	2001731..2002876	-	381	157163944	fabE	CCC13826_1900	-	biotin carboxyl carrier protein
1888	 41.84	0	2002961..2003665	-	234	157163946	-	CCC13826_1899	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1889	 43.32	0	2003914..2006016	-	700	157164943	nrdD	CCC13826_1897	-	anaerobic ribonucleoside triphosphate reductase
1890	 41.67	0	2006318..2006761	+	147	157165531	-	CCC13826_1896	-	histidine biosynthesis bifunctional protein hisIE
1891	 44.82	+1	2006823..2009198	-	791	157165034	-	CCC13826_1895	-	ribonucleotide-diphosphate reductase subunit alpha
1892	 47.15	+1	2009550..2010881	-	443	157165476	purB	CCC13826_1894	-	adenylosuccinate lyase
1893	 40.80	0	2011069..2011992	+	307	157163990	-	CCC13826_1893	-	disulfide isomerase
1894	 41.27	0	2012286..2013431	-	381	157164532	-	CCC13826_1892	-	radical SAM protein
1895	 33.48	-1	2013428..2014108	-	226	157164421	bcp	CCC13826_1891	-	bacterioferritin comigratory protein Bcp
1896	 45.50	+1	2014108..2014863	-	251	157164967	hisF	CCC13826_1890	-	imidazoleglycerol phosphate synthase, cyclase subunit
1897	 41.72	0	2014866..2018144	-	1092	157164250	-	CCC13826_1889	-	hypothetical protein
1898	 36.06	0	2018251..2019093	+	280	157163959	ksgA	CCC13826_1888	-	dimethyladenosine transferase
1899	 43.92	0	2019059..2021212	+	717	157165115	-	CCC13826_1887	-	peptide ABC transporter, periplasmic peptide-binding protein
1900	 44.34	0	2021222..2022175	+	317	157164706	-	CCC13826_1886	-	arabinose 5-phosphate isomerase
1901	 42.25	0	2022177..2022950	+	257	157165467	-	CCC13826_1885	-	putative peptide ABC transporter, permease protein
1902	 42.35	0	2023698..2024207	-	169	157164356	-	CCC13826_1883	-	hypothetical protein
1903	 39.20	0	2024204..2025157	-	317	157163875	-	CCC13826_1882	-	hypothetical protein
1904	 41.85	0	2025154..2025822	-	222	157163867	-	CCC13826_1881	-	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase)
1905	 38.11	0	2025819..2026928	-	369	157165309	-	CCC13826_1880	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
1906	 37.63	0	2026918..2027103	-	61	157165247	-	CCC13826_1879	-	hypothetical protein
1907	 43.14	0	2027105..2027563	-	152	157164789	-	CCC13826_1878	-	NosL protein
1908	 41.07	0	2027560..2028102	-	180	157165367	-	CCC13826_1877	-	hypothetical protein
1909	 43.80	0	2028102..2028923	-	273	157164937	-	CCC13826_1876	-	carbamoyl-phosphate synthase large subunit
1910	 41.38	0	2028932..2031553	-	873	157164898	-	CCC13826_1875	-	NAD(FAD)-utilizing dehydrogenase
1911	 41.51	0	2031567..2032496	-	309	157164468	-	CCC13826_1874	-	polysulphide reductase, NrfD
1912	 41.67	0	2032498..2033181	-	227	157164044	-	CCC13826_1873	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1913	 40.18	0	2033189..2033947	-	252	157165615	-	CCC13826_1872	-	adenylosuccinate synthetase (imp--aspartate ligase; adss; ampsase)
1914	 42.43	0	2033992..2036058	-	688	157165065	-	CCC13826_1871	-	tRNA synthetase, class II
1915	 38.24	0	2036154..2037581	-	475	157164528	-	CCC13826_1870	-	hypothetical protein
1916	 41.30	0	2037571..2038260	-	229	157165169	frp	CCC13826_1869	-	NAD(P)H-flavin oxidoreductase
1917	 47.29	+1	2040340..2040948	-	202	157165330	pyrE	CCC13826_1866	-	orotate phosphoribosyltransferase
1918	 43.86	0	2041068..2042435	+	455	157164872	-	CCC13826_1865	-	citrate transporter
1919	 27.15	-2	2042474..2042764	+	96	157164194	-	CCC13826_1864	-	formate dehydrogenase, cytochrome B subunit
1920	 36.26	0	2042764..2042934	+	56	157165485	-	CCC13826_1863	-	DJ-1/PfpI family protein
1921	 43.15	0	2043153..2045597	+	814	157165263	flgE	CCC13826_1862	-	flagellar hook protein FlgE
1922	 40.79	0	2045657..2046313	+	218	157164602	thyX	CCC13826_1861	-	FAD-dependent thymidylate synthase
1923	 28.62	-2	2046367..2046642	-	91	157163966	-	CCC13826_1860	-	addiction module antitoxin
1924	 31.17	-1	2046642..2046872	-	76	157164318	-	CCC13826_1859	-	molybdopterin converting factor, subunit 2
1925	 39.02	0	2046939..2048045	-	368	157165591	-	CCC13826_1858	-	D12 class N6 adenine-specific DNA methyltransferase superfamily protein
1926	 41.67	0	2048047..2048562	-	171	157165538	luxS	CCC13826_1857	-	S-ribosylhomocysteinase
1927	 39.49	0	2048669..2050633	-	654	157165017	-	CCC13826_1856	-	acyl-CoA hydrolase
1928	 43.62	0	2050700..2051389	-	229	157164187	-	CCC13826_1855	-	mosc domain-containing protein
1929	 38.82	0	2051406..2051879	-	157	157165401	ruvC	CCC13826_1854	-	Holliday junction resolvase
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.