IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1627	 37.40	0	1732508..1733368	+	286	157164620	-	CCC13826_2132	-	ATP phosphoribosyltransferase regulatory subunit
1628	 45.16	+1	1733371..1734621	+	416	157165191	purA	CCC13826_2131	-	adenylosuccinate synthetase
1629	 38.30	0	1734618..1735040	+	140	157164985	-	CCC13826_2130	-	hypothetical protein
1630	 42.91	0	1735040..1735603	+	187	157165534	-	CCC13826_2129	-	ATPase, AAA family protein
1631	 34.36	0	1735692..1736273	+	193	157164088	-	CCC13826_2128	-	hypothetical protein
1632	 45.75	+1	1736326..1739586	-	1086	157164628	carB	CCC13826_2127	-	carbamoyl phosphate synthase large subunit
1633	 40.14	0	1739586..1740305	-	239	157164160	-	CCC13826_2126	-	putative hemagglutinin/hemolysin-related protein
1634	 44.61	+1	1740331..1741368	-	345	157165639	-	CCC13826_2125	-	cell shape determining protein MreB
1635	 42.58	0	1741378..1742610	-	410	157165299	clpX	CCC13826_2124	-	ATP-dependent protease ATP-binding subunit
1636	 44.97	+1	1743423..1743869	-	148	157165313	fabZ	CCC13826_2122	-	(3R)-hydroxymyristoyl-ACP dehydratase
1637	 42.62	0	1743980..1745056	-	358	157164337	-	CCC13826_2121	-	putative orphan protein
1638	 37.60	0	1745083..1745832	-	249	157163939	-	CCC13826_2120	-	putative ABC transporter, ATP-binding protein
1639	 41.56	0	1745829..1746509	-	226	157165480	-	CCC13826_2119	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1640	 41.07	0	1746506..1747306	-	266	157165589	-	CCC13826_2118	-	peptide ABC transporter, permease protein
1641	 40.04	0	1747303..1748241	-	312	157164487	pepD	CCC13826_2117	-	dipeptidase
1642	 39.27	0	1748254..1749786	-	510	157164930	-	CCC13826_2116	-	hypothetical protein
1643	 37.95	0	1749961..1753299	+	1112	157165048	-	CCC13826_2114	-	diaminopimelate epimerase (DAP epimerase)
1644	 37.78	0	1753296..1753700	-	134	157164436	rplT	CCC13826_2115	-	50S ribosomal protein L20
1645	 43.63	0	1753815..1754018	+	67	157165773	-	CCC13826_2113	-	hypothetical protein
1646	 43.57	0	1754015..1754512	+	165	157163950	-	CCC13826_2112	-	anti-oxidant AhpCTSA family protein
1647	 31.47	-1	1754521..1756236	+	571	157164581	-	CCC13826_2111	-	phosphoribosylformylglycinamidine cyclo-ligase
1648	 40.19	0	1756263..1756904	+	213	157165280	-	CCC13826_2110	-	hypothetical protein
1649	 43.39	0	1757005..1757919	+	304	157165029	ilvE	CCC13826_2109	-	branched-chain amino acid aminotransferase
1650	 44.03	0	1757936..1759048	+	370	157165488	-	CCC13826_2108	-	SPFH domain-containing protein
1651	 40.95	0	1759051..1759785	+	244	157164332	-	CCC13826_2107	-	hydrolase
1652	 33.52	-1	1759775..1760305	+	176	157165716	-	CCC13826_2106	-	putative integral membrane protein
1653	 38.32	0	1760296..1760856	+	186	157165289	-	CCC13826_2105	-	DNA gyrase subunit B
1654	 45.42	+1	1761014..1762345	-	443	157164344	accC	CCC13826_2104	-	biotin carboxylase
1655	 43.05	0	1762345..1762797	-	150	157163904	accB	CCC13826_2103	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1656	 41.82	0	1762883..1763542	-	219	157165456	modB	CCC13826_2102	-	molybdate ABC transporter, permease protein
1657	 39.91	0	1763551..1764249	-	232	157165002	modA	CCC13826_2101	-	molybdate ABC transporter, periplasmic molybdate-binding protein
1658	 42.88	0	1764377..1765465	+	362	157164098	-	CCC13826_2100	-	nicotinate phosphoribosyltransferase
1659	 37.95	0	1765474..1765971	+	165	157165729	tlpA	CCC13826_2099	-	methyl-accepting chemotaxis protein
1660	 43.76	0	1766027..1766899	+	290	157165250	-	CCC13826_2098	-	S-ribosylhomocysteine lyase (autoinducer-2 productionprotein LuxS; AI-2 synthesis protein)
1661	 40.45	0	1766899..1767165	+	88	157164876	fliQ	CCC13826_2097	-	flagellar biosynthesis protein FliQ
1662	 42.61	0	1767162..1767959	+	265	157164383	murB	CCC13826_2096	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1663	 32.11	-1	1767968..1768456	+	162	157164278	-	CCC13826_2095	-	addiction module antitoxin
1664	 46.63	+1	1768519..1769616	+	365	157164266	recA	CCC13826_2094	-	recombinase A
1665	 47.56	+1	1769616..1770866	+	416	157164833	eno	CCC13826_2093	-	phosphopyruvate hydratase
1666	 39.18	0	1770863..1771153	+	96	157164412	-	CCC13826_2092	-	hypothetical protein
1667	 37.17	0	1771159..1772019	+	286	157164078	-	CCC13826_2091	-	putative periplasmic protein
1668	 40.40	0	1772086..1773147	+	353	157164045	-	CCC13826_2090	-	transport protein
1669	 45.84	+1	1773883..1776873	-	996	157165618	-	CCC13826_2089	-	orotate phosphoribosyltransferase (oprt; oprtase)
1670	 45.66	+1	1776887..1777624	-	245	157165183	-	CCC13826_2088	-	methyl-accepting chemotaxis sensory transducer
1671	 40.19	0	1780499..1781461	-	320	157164974	-	CCC13826_2191	-	putative two-component sensor
1672	 39.54	0	1781454..1782017	-	187	157164201	-	CCC13826_2192	-	hypothetical protein
1673	 41.09	0	1782242..1782499	+	85	157164632	-	CCC13826_2193	-	hypothetical protein
1674	 47.24	+1	1782820..1784085	-	421	157164713	leuC	CCC13826_2194	-	3-isopropylmalate dehydratase large subunit
1675	 29.63	-1	1784433..1784567	-	44	157165138	-	CCC13826_2195	-	hypothetical protein
1676	 42.31	0	1784641..1786455	+	604	157165438	-	CCC13826_2196	-	methyl-accepting chemotaxis protein
1677	 37.94	0	1786527..1787849	+	440	157163885	-	CCC13826_2197	-	Hsp12 variant C
1678	 46.20	+1	1787852..1788193	+	113	157164019	-	CCC13826_2198	-	hypothetical protein
1679	 41.84	0	1788482..1789057	+	191	157164965	-	CCC13826_2199	-	putative transport-associated
1680	 39.90	0	1789060..1791510	-	816	157164665	-	CCC13826_2200	-	hypothetical protein
1681	 36.32	0	1791510..1792112	-	200	157164142	ttg2D	CCC13826_2201	-	toluene tolerance protein Ttg2D
1682	 40.93	0	1792115..1792825	-	236	157165770	-	CCC13826_2202	-	ABC transporter ATPase
1683	 38.70	0	1792980..1793762	+	260	157165486	-	CCC13826_2203	-	molybdenum-pterin binding domain-containing protein
1684	 43.12	0	1793763..1794518	+	251	157164768	modA	CCC13826_2204	-	molybdate ABC transporter, periplasmic molybdate-binding protein
1685	 38.72	0	1794515..1794904	+	129	157164347	-	CCC13826_2205	-	beta-lactamase HcpA
1686	 40.79	0	1794907..1795764	+	285	157164060	-	CCC13826_2281	-	RNA pseudouridine synthase
1687	 43.41	0	1795764..1796438	+	224	157165201	modB	CCC13826_2282	-	molybdate ABC transporter, permease protein
1688	 39.76	0	1796475..1796972	+	165	157164976	-	CCC13826_2283	-	putative BcpB
1689	 37.25	0	1796982..1798538	+	518	157164979	-	CCC13826_2284	-	dimethyladenosine transferase
1690	 38.28	0	1798540..1799004	+	154	157164899	-	CCC13826_2285	-	DNA helicase related protein
1691	 40.17	0	1799007..1799810	-	267	157165331	-	CCC13826_2286	-	protein CysQ
1692	 46.48	+1	1799807..1801084	-	425	157164090	gltA	CCC13826_2287	-	citrate (Si)-synthase
1693	 42.10	0	1801087..1802250	-	387	157164493	-	CCC13826_2288	-	radical SAM protein
1694	 27.35	-2	1802278..1802394	+	38	157165532	-	CCC13826_2289	-	RNA pseudouridine synthase
1695	 33.75	-1	1802367..1802849	+	160	157164119	-	CCC13826_2290	-	hypothetical protein
1696	 42.74	0	1802860..1802976	+	38	157164689	-	CCC13826_2291	-	hypothetical protein
1697	 40.40	0	1803451..1803804	-	117	157165249	crcB	CCC13826_2292	-	CrcB protein
1698	 47.62	+1	1803804..1804643	-	279	157165117	-	CCC13826_2293	-	biotin synthase
1699	 37.18	0	1804899..1805054	+	51	157165666	nrdD	CCC13826_2294	-	oxygen-sensitive ribonucleoside-triphosphate reductase
1700	 44.31	0	1805317..1806036	-	239	157164127	-	CCC13826_2295	-	hypothetical protein
1701	 44.96	+1	1806096..1808210	-	704	157164552	topA	CCC13826_2296	-	DNA topoisomerase I
1702	 39.60	0	1808412..1809911	+	499	157164988	-	CCC13826_2297	-	flagellin B
1703	 37.61	0	1810187..1810957	-	256	157165433	-	CCC13826_2298	-	flagellin modification protein A
1704	 36.58	0	1810944..1811651	-	235	157163906	-	CCC13826_2299	-	N-acylneuraminate cytidylyltransferase
1705	 35.66	0	1811644..1812546	-	300	157165259	-	CCC13826_2300	-	oxidoreductase family protein
1706	 38.87	0	1812560..1813606	-	348	157164273	-	CCC13826_2301	-	nucleotidyl transferase
1707	 37.30	0	1813603..1814763	-	386	157165593	-	CCC13826_2302	-	UDP-N-acetylglucosamine 2-epimerase
1708	 40.22	0	1814760..1815761	-	333	157165127	-	CCC13826_2303	-	general stress protein 14 (GSP14)
1709	 42.97	0	1815786..1816397	-	203	157164184	-	CCC13826_2304	-	hypothetical protein
1710	 42.62	0	1816400..1817551	-	383	157164585	-	CCC13826_2305	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
1711	 45.99	+1	1820904..1821464	-	186	157165301	dcd	CCC13826_2308	-	deoxycytidine triphosphate deaminase
1712	 42.94	0	1821588..1822430	+	280	157164358	-	CCC13826_2309	-	hydrogenase-4 component C
1713	 35.65	0	1822451..1823011	+	186	157163949	hyfB	CCC13826_2310	-	hydrogenase-4 component B
1714	 34.67	0	1823280..1823876	+	198	157164145	-	CCC13826_2311	-	electron transport protein HydN
1715	 33.94	0	1823879..1825027	-	382	157165052	-	CCC13826_2312	-	hypothetical protein
1716	 36.58	0	1826222..1827115	+	297	157164701	-	CCC13826_2314	-	hypothetical protein
1717	 41.45	0	1827138..1829429	+	763	157165411	-	CCC13826_2315	-	putative anaerobic dehydrogenase
1718	 42.39	0	1829441..1829992	+	183	157163871	fbcH	CCC13826_2316	-	ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
1719	 35.35	0	1830003..1830647	+	214	157164082	fbcF	CCC13826_2317	-	ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit
1720	 39.66	0	1830651..1831535	+	294	157164510	-	CCC13826_2318	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1721	 43.42	0	1831591..1832145	-	184	157165134	-	CCC13826_2319	-	2-acylglycerophosphoethanolamine acyltransferase
1722	 41.63	0	1838221..1842981	-	1586	157165566	yckK	CCC13826_1696	-	amino acid ABC transporter, periplasmic binding protein
1723	 39.54	0	1843068..1843502	-	144	157164885	-	CCC13826_1697	-	putative endoribonuclease L-PSP
1724	 39.45	0	1843537..1844010	+	157	157163870	-	CCC13826_1699	-	L-cystine permease protein TcyB
1725	 38.89	0	1843988..1844527	-	179	157165547	-	CCC13826_1698	-	L-cystine-binding protein TcyA
1726	 47.24	+1	1844570..1845130	-	186	157164667	-	CCC13826_1700	-	L-cystine import ATP-binding protein TcyC
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.