IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1585	 42.30	0	1690070..1690504	-	144	157165195	-	CCC13826_0284	-	GTP cyclohydrolase I (GTP-CH-I)
1586	 39.79	0	1690495..1692105	-	536	157165078	-	CCC13826_2177	-	glycosyl transferase, group 2 family protein
1587	 40.53	0	1692102..1693658	-	518	157165647	-	CCC13826_2176	-	trigger factor (TF)
1588	 37.36	0	1693648..1694193	-	181	157164232	-	CCC13826_2175	-	ATP-dependent Clp protease proteolytic subunit
1589	 34.96	0	1694183..1694428	-	81	157164698	-	CCC13826_2174	-	putative diguanylate cyclase
1590	 38.76	0	1694431..1694688	-	85	157164785	-	CCC13826_2173	-	acyl carrier protein
1591	 37.08	0	1694672..1695418	-	248	157164846	-	CCC13826_2172	-	acyltransferase family protein
1592	 39.76	0	1695408..1696076	-	222	157165478	-	CCC13826_2171	-	hypothetical protein
1593	 42.21	0	1696076..1696492	-	138	157163940	-	CCC13826_2170	-	phosphoribosylglycinamide formyltransferase
1594	 46.25	+1	1696505..1697758	-	417	157165107	terC	CCC13826_2169	-	TerC protein
1595	 41.22	0	1698470..1698913	-	147	157164185	-	CCC13826_2167	-	cation ABC transporter, permease protein
1596	 44.82	+1	1698910..1700076	-	388	157165481	norM	CCC13826_2166	-	MatE efflux family protein
1597	 39.15	0	1700063..1700440	-	125	157164491	-	CCC13826_2165	-	hypothetical protein
1598	 31.99	-1	1700466..1700987	-	173	157165664	-	CCC13826_2164	-	4'-phosphopantetheinyl transferase superfamily protein
1599	 38.01	0	1700968..1701651	-	227	157165685	-	CCC13826_2163	-	periplasmic solute binding protein for ABC transport system
1600	 27.19	-2	1701828..1701941	-	37	157165288	-	CCC13826_2162	-	hypothetical protein
1601	 34.67	0	1702079..1702228	-	49	157164269	-	CCC13826_2161	-	putative ferric uptake regulation protein
1602	 43.86	0	1702507..1703361	-	284	157165574	-	CCC13826_2160	-	hypothetical protein
1603	 44.44	+1	1703361..1703954	-	197	157164703	-	CCC13826_2159	-	LemA family protein
1604	 40.54	0	1704064..1709490	-	1808	157164321	-	CCC13826_2158	-	hypothetical protein
1605	 38.97	0	1709784..1710191	-	135	157165056	-	CCC13826_2157	-	protein YhbP
1606	 33.93	0	1710192..1710527	-	111	157164368	-	CCC13826_2156	-	putative L-arabinose ABC transporter
1607	 37.93	0	1710645..1711166	+	173	157165565	dgkA	CCC13826_2155	-	diacylglycerol kinase
1608	 38.87	0	1711185..1711925	-	246	157165130	-	CCC13826_2154	-	putative integral membrane protein
1609	 38.36	0	1711922..1712617	-	231	157165300	-	CCC13826_2153	-	dUTPase
1610	 41.80	0	1712747..1712935	+	62	157164263	-	CCC13826_2151	-	hypothetical protein
1611	 35.23	0	1712932..1715301	-	789	157164804	-	CCC13826_2152	-	molybdenum-pterin binding protein
1612	 27.41	-2	1715366..1715905	+	179	157165338	-	CCC13826_2150	-	30S ribosomal protein S20
1613	 37.23	0	1715924..1718284	-	786	157163979	-	CCC13826_2149	-	phosphoglucosamine mutase
1614	 40.60	0	1718277..1720121	-	614	157165505	lspA	CCC13826_2148	-	lipoprotein signal peptidase
1615	 43.48	0	1720212..1720625	+	137	157165613	-	CCC13826_2146	-	thioesterase family protein
1616	 39.12	0	1720775..1721413	+	212	157165197	-	CCC13826_2145	-	hypothetical protein
1617	 38.03	0	1721421..1721888	-	155	157165587	-	CCC13826_2144	-	hypothetical protein
1618	 43.68	0	1721900..1722334	-	144	157165158	moaE	CCC13826_2143	-	molybdopterin converting factor, subunit 2
1619	 45.96	+1	1722642..1723781	+	379	157164290	nspC	CCC13826_2141	-	carboxynorspermidine decarboxylase
1620	 26.98	-2	1723791..1723916	+	41	157165501	gdhA	CCC13826_2140	-	glutamate dehydrogenase, NADP-specific
1621	 43.55	0	1724063..1724659	-	198	157165655	-	CCC13826_2139	-	DJ-1/PfpI family protein
1622	 42.09	0	1724894..1725841	+	315	157165024	-	CCC13826_2138	-	formate dehydrogenase, cytochrome B subunit
1623	 39.14	0	1725988..1726590	+	200	157165403	-	CCC13826_2136	-	translation initiation factor IF-3
1624	 46.18	+1	1726863..1727609	+	248	157164928	selD	CCC13826_2135	-	selenide, water dikinase
1625	 42.35	0	1727722..1728342	+	206	157165400	-	CCC13826_2134	-	nitroreductase family protein
1626	 36.22	0	1728430..1732515	+	1361	157164324	-	CCC13826_2133	-	YbaK
1627	 37.40	0	1732508..1733368	+	286	157164620	-	CCC13826_2132	-	ATP phosphoribosyltransferase regulatory subunit
1628	 45.16	+1	1733371..1734621	+	416	157165191	purA	CCC13826_2131	-	adenylosuccinate synthetase
1629	 38.30	0	1734618..1735040	+	140	157164985	-	CCC13826_2130	-	hypothetical protein
1630	 42.91	0	1735040..1735603	+	187	157165534	-	CCC13826_2129	-	ATPase, AAA family protein
1631	 34.36	0	1735692..1736273	+	193	157164088	-	CCC13826_2128	-	hypothetical protein
1632	 45.75	+1	1736326..1739586	-	1086	157164628	carB	CCC13826_2127	-	carbamoyl phosphate synthase large subunit
1633	 40.14	0	1739586..1740305	-	239	157164160	-	CCC13826_2126	-	putative hemagglutinin/hemolysin-related protein
1634	 44.61	+1	1740331..1741368	-	345	157165639	-	CCC13826_2125	-	cell shape determining protein MreB
1635	 42.58	0	1741378..1742610	-	410	157165299	clpX	CCC13826_2124	-	ATP-dependent protease ATP-binding subunit
1636	 44.97	+1	1743423..1743869	-	148	157165313	fabZ	CCC13826_2122	-	(3R)-hydroxymyristoyl-ACP dehydratase
1637	 42.62	0	1743980..1745056	-	358	157164337	-	CCC13826_2121	-	putative orphan protein
1638	 37.60	0	1745083..1745832	-	249	157163939	-	CCC13826_2120	-	putative ABC transporter, ATP-binding protein
1639	 41.56	0	1745829..1746509	-	226	157165480	-	CCC13826_2119	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1640	 41.07	0	1746506..1747306	-	266	157165589	-	CCC13826_2118	-	peptide ABC transporter, permease protein
1641	 40.04	0	1747303..1748241	-	312	157164487	pepD	CCC13826_2117	-	dipeptidase
1642	 39.27	0	1748254..1749786	-	510	157164930	-	CCC13826_2116	-	hypothetical protein
1643	 37.95	0	1749961..1753299	+	1112	157165048	-	CCC13826_2114	-	diaminopimelate epimerase (DAP epimerase)
1644	 37.78	0	1753296..1753700	-	134	157164436	rplT	CCC13826_2115	-	50S ribosomal protein L20
1645	 43.63	0	1753815..1754018	+	67	157165773	-	CCC13826_2113	-	hypothetical protein
1646	 43.57	0	1754015..1754512	+	165	157163950	-	CCC13826_2112	-	anti-oxidant AhpCTSA family protein
1647	 31.47	-1	1754521..1756236	+	571	157164581	-	CCC13826_2111	-	phosphoribosylformylglycinamidine cyclo-ligase
1648	 40.19	0	1756263..1756904	+	213	157165280	-	CCC13826_2110	-	hypothetical protein
1649	 43.39	0	1757005..1757919	+	304	157165029	ilvE	CCC13826_2109	-	branched-chain amino acid aminotransferase
1650	 44.03	0	1757936..1759048	+	370	157165488	-	CCC13826_2108	-	SPFH domain-containing protein
1651	 40.95	0	1759051..1759785	+	244	157164332	-	CCC13826_2107	-	hydrolase
1652	 33.52	-1	1759775..1760305	+	176	157165716	-	CCC13826_2106	-	putative integral membrane protein
1653	 38.32	0	1760296..1760856	+	186	157165289	-	CCC13826_2105	-	DNA gyrase subunit B
1654	 45.42	+1	1761014..1762345	-	443	157164344	accC	CCC13826_2104	-	biotin carboxylase
1655	 43.05	0	1762345..1762797	-	150	157163904	accB	CCC13826_2103	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1656	 41.82	0	1762883..1763542	-	219	157165456	modB	CCC13826_2102	-	molybdate ABC transporter, permease protein
1657	 39.91	0	1763551..1764249	-	232	157165002	modA	CCC13826_2101	-	molybdate ABC transporter, periplasmic molybdate-binding protein
1658	 42.88	0	1764377..1765465	+	362	157164098	-	CCC13826_2100	-	nicotinate phosphoribosyltransferase
1659	 37.95	0	1765474..1765971	+	165	157165729	tlpA	CCC13826_2099	-	methyl-accepting chemotaxis protein
1660	 43.76	0	1766027..1766899	+	290	157165250	-	CCC13826_2098	-	S-ribosylhomocysteine lyase (autoinducer-2 productionprotein LuxS; AI-2 synthesis protein)
1661	 40.45	0	1766899..1767165	+	88	157164876	fliQ	CCC13826_2097	-	flagellar biosynthesis protein FliQ
1662	 42.61	0	1767162..1767959	+	265	157164383	murB	CCC13826_2096	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1663	 32.11	-1	1767968..1768456	+	162	157164278	-	CCC13826_2095	-	addiction module antitoxin
1664	 46.63	+1	1768519..1769616	+	365	157164266	recA	CCC13826_2094	-	recombinase A
1665	 47.56	+1	1769616..1770866	+	416	157164833	eno	CCC13826_2093	-	phosphopyruvate hydratase
1666	 39.18	0	1770863..1771153	+	96	157164412	-	CCC13826_2092	-	hypothetical protein
1667	 37.17	0	1771159..1772019	+	286	157164078	-	CCC13826_2091	-	putative periplasmic protein
1668	 40.40	0	1772086..1773147	+	353	157164045	-	CCC13826_2090	-	transport protein
1669	 45.84	+1	1773883..1776873	-	996	157165618	-	CCC13826_2089	-	orotate phosphoribosyltransferase (oprt; oprtase)
1670	 45.66	+1	1776887..1777624	-	245	157165183	-	CCC13826_2088	-	methyl-accepting chemotaxis sensory transducer
1671	 40.19	0	1780499..1781461	-	320	157164974	-	CCC13826_2191	-	putative two-component sensor
1672	 39.54	0	1781454..1782017	-	187	157164201	-	CCC13826_2192	-	hypothetical protein
1673	 41.09	0	1782242..1782499	+	85	157164632	-	CCC13826_2193	-	hypothetical protein
1674	 47.24	+1	1782820..1784085	-	421	157164713	leuC	CCC13826_2194	-	3-isopropylmalate dehydratase large subunit
1675	 29.63	-1	1784433..1784567	-	44	157165138	-	CCC13826_2195	-	hypothetical protein
1676	 42.31	0	1784641..1786455	+	604	157165438	-	CCC13826_2196	-	methyl-accepting chemotaxis protein
1677	 37.94	0	1786527..1787849	+	440	157163885	-	CCC13826_2197	-	Hsp12 variant C
1678	 46.20	+1	1787852..1788193	+	113	157164019	-	CCC13826_2198	-	hypothetical protein
1679	 41.84	0	1788482..1789057	+	191	157164965	-	CCC13826_2199	-	putative transport-associated
1680	 39.90	0	1789060..1791510	-	816	157164665	-	CCC13826_2200	-	hypothetical protein
1681	 36.32	0	1791510..1792112	-	200	157164142	ttg2D	CCC13826_2201	-	toluene tolerance protein Ttg2D
1682	 40.93	0	1792115..1792825	-	236	157165770	-	CCC13826_2202	-	ABC transporter ATPase
1683	 38.70	0	1792980..1793762	+	260	157165486	-	CCC13826_2203	-	molybdenum-pterin binding domain-containing protein
1684	 43.12	0	1793763..1794518	+	251	157164768	modA	CCC13826_2204	-	molybdate ABC transporter, periplasmic molybdate-binding protein
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.