IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1542	 43.77	0	1641030..1643003	+	657	157164285	-	CCC13826_0230	-	hypothetical protein
1543	 46.30	+1	1643067..1644902	-	611	157164952	-	CCC13826_0231	-	arylsulfotransferase
1544	 39.25	0	1645109..1645852	-	247	157165131	-	CCC13826_0232	-	ABC transporter, ATP-binding protein
1545	 43.66	0	1645849..1646574	-	241	157164707	-	CCC13826_0233	-	ABC transporter, permease protein
1546	 34.38	0	1646571..1646762	-	63	157165155	-	CCC13826_0234	-	twin-arginine translocation pathway signal
1547	 44.22	0	1647642..1649681	+	679	157164283	cooS	CCC13826_0236	-	carbon-monoxide dehydrogenase, catalytic subunit
1548	 39.04	0	1649865..1650548	-	227	157165057	-	CCC13826_0237	-	hypothetical protein
1549	 38.46	0	1650545..1650817	-	90	157165499	-	CCC13826_0238	-	hypothetical protein
1550	 42.01	0	1650814..1651320	-	168	157164189	-	CCC13826_0239	-	S-layer-like domain-containing protein
1551	 44.18	0	1651330..1651956	-	208	157164716	upp	CCC13826_0240	-	uracil phosphoribosyltransferase
1552	 43.46	0	1652046..1653299	-	417	157165008	tktA	CCC13826_0241	-	transketolase A
1553	 42.39	0	1653296..1654675	-	459	157165579	gltX	CCC13826_0242	-	glutamyl-tRNA synthetase
1554	 40.19	0	1654746..1655576	+	276	157164911	-	CCC13826_0243	-	putative periplasmic protein
1555	 42.22	0	1656159..1657250	-	363	157163957	dapE	CCC13826_0246	-	succinyl-diaminopimelate desuccinylase
1556	 37.36	0	1657250..1659160	-	636	157164738	-	CCC13826_0247	-	cyclic diguanylate phosphodiesterase domain-containing protein
1557	 42.90	0	1659257..1661461	-	734	157165178	-	CCC13826_0248	-	recombination and DNA strand exchange inhibitor protein
1558	 40.00	0	1661458..1661802	-	114	157165094	-	CCC13826_0249	-	hypothetical protein
1559	 29.68	-1	1663711..1664667	+	318	157164891	-	CCC13826_0252	-	aliphatic sulfonate ABC transporter permease protein
1560	 28.50	-2	1664667..1664873	+	68	157165332	-	CCC13826_0253	-	hypothetical protein
1561	 36.64	0	1664842..1665294	+	150	157165719	-	CCC13826_0254	-	hypothetical protein
1562	 31.00	-1	1666799..1667098	+	99	157165542	rplQ	CCC13826_0256	-	50S ribosomal protein L17
1563	 28.09	-2	1667109..1667909	+	266	157164987	-	CCC13826_0257	-	DNA-directed RNA polymerase alpha chain
1564	 33.42	-1	1667909..1669129	+	406	157164656	-	CCC13826_0258	-	hypothetical protein
1565	 30.30	-1	1669883..1670080	+	65	157165720	-	CCC13826_0260	-	hypothetical protein
1566	 28.37	-2	1670918..1671199	+	93	157163895	-	CCC13826_0262	-	hypothetical protein
1567	 35.92	0	1672072..1672419	+	115	157164454	-	CCC13826_0263	-	hypothetical protein
1568	 36.28	0	1672430..1672768	+	112	157164055	-	CCC13826_0264	-	hypothetical protein
1569	 25.84	-2	1672768..1673154	+	128	157165453	-	CCC13826_0265	-	30S ribosomal protein S5 (BS5)
1570	 27.08	-2	1673135..1673374	+	79	157164950	-	CCC13826_0266	-	50S ribosomal protein L18
1571	 28.33	-2	1673367..1673666	+	99	157164393	-	CCC13826_0267	-	hypothetical protein
1572	 37.17	0	1673671..1674009	+	112	157164326	-	CCC13826_0268	-	L-alanyl-D-glutamate peptidase
1573	 34.46	0	1674056..1674409	-	117	157165407	-	CCC13826_0269	-	30S ribosomal protein S8
1574	 35.19	0	1674630..1674791	+	53	157164591	-	CCC13826_0271	-	50S ribosomal protein L5 (BL6)
1575	 44.66	+1	1674756..1676291	-	511	157165163	-	CCC13826_0270	-	flavocytochrome c flavin subunit
1576	 42.65	0	1676444..1677001	-	185	157164512	-	CCC13826_0272	-	50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12)
1577	 32.29	-1	1677785..1677976	-	63	157164103	rpsQ	CCC13826_0274	-	30S ribosomal protein S17
1578	 43.72	0	1677980..1679086	-	368	157165371	metX	CCC13826_0275	-	homoserine O-acetyltransferase
1579	 47.07	+1	1679086..1680534	-	482	157164971	guaB	CCC13826_0276	-	inositol-5-monophosphate dehydrogenase
1580	 42.44	0	1684849..1685946	+	365	157164022	fadD	CCC13826_0279	-	long-chain-fatty-acid--CoA ligase
1581	 41.88	0	1686036..1686854	+	272	157165441	-	CCC13826_0280	-	AAA ATPase family protein
1582	 43.75	0	1686848..1687279	+	143	157165179	-	CCC13826_0281	-	hypothetical protein
1583	 38.36	0	1687330..1689558	-	742	157164469	-	CCC13826_0282	-	hypothetical protein
1584	 37.19	0	1689555..1690073	-	172	157164997	-	CCC13826_0283	-	flagellum-specific ATP synthase
1585	 42.30	0	1690070..1690504	-	144	157165195	-	CCC13826_0284	-	GTP cyclohydrolase I (GTP-CH-I)
1586	 39.79	0	1690495..1692105	-	536	157165078	-	CCC13826_2177	-	glycosyl transferase, group 2 family protein
1587	 40.53	0	1692102..1693658	-	518	157165647	-	CCC13826_2176	-	trigger factor (TF)
1588	 37.36	0	1693648..1694193	-	181	157164232	-	CCC13826_2175	-	ATP-dependent Clp protease proteolytic subunit
1589	 34.96	0	1694183..1694428	-	81	157164698	-	CCC13826_2174	-	putative diguanylate cyclase
1590	 38.76	0	1694431..1694688	-	85	157164785	-	CCC13826_2173	-	acyl carrier protein
1591	 37.08	0	1694672..1695418	-	248	157164846	-	CCC13826_2172	-	acyltransferase family protein
1592	 39.76	0	1695408..1696076	-	222	157165478	-	CCC13826_2171	-	hypothetical protein
1593	 42.21	0	1696076..1696492	-	138	157163940	-	CCC13826_2170	-	phosphoribosylglycinamide formyltransferase
1594	 46.25	+1	1696505..1697758	-	417	157165107	terC	CCC13826_2169	-	TerC protein
1595	 41.22	0	1698470..1698913	-	147	157164185	-	CCC13826_2167	-	cation ABC transporter, permease protein
1596	 44.82	+1	1698910..1700076	-	388	157165481	norM	CCC13826_2166	-	MatE efflux family protein
1597	 39.15	0	1700063..1700440	-	125	157164491	-	CCC13826_2165	-	hypothetical protein
1598	 31.99	-1	1700466..1700987	-	173	157165664	-	CCC13826_2164	-	4'-phosphopantetheinyl transferase superfamily protein
1599	 38.01	0	1700968..1701651	-	227	157165685	-	CCC13826_2163	-	periplasmic solute binding protein for ABC transport system
1600	 27.19	-2	1701828..1701941	-	37	157165288	-	CCC13826_2162	-	hypothetical protein
1601	 34.67	0	1702079..1702228	-	49	157164269	-	CCC13826_2161	-	putative ferric uptake regulation protein
1602	 43.86	0	1702507..1703361	-	284	157165574	-	CCC13826_2160	-	hypothetical protein
1603	 44.44	+1	1703361..1703954	-	197	157164703	-	CCC13826_2159	-	LemA family protein
1604	 40.54	0	1704064..1709490	-	1808	157164321	-	CCC13826_2158	-	hypothetical protein
1605	 38.97	0	1709784..1710191	-	135	157165056	-	CCC13826_2157	-	protein YhbP
1606	 33.93	0	1710192..1710527	-	111	157164368	-	CCC13826_2156	-	putative L-arabinose ABC transporter
1607	 37.93	0	1710645..1711166	+	173	157165565	dgkA	CCC13826_2155	-	diacylglycerol kinase
1608	 38.87	0	1711185..1711925	-	246	157165130	-	CCC13826_2154	-	putative integral membrane protein
1609	 38.36	0	1711922..1712617	-	231	157165300	-	CCC13826_2153	-	dUTPase
1610	 41.80	0	1712747..1712935	+	62	157164263	-	CCC13826_2151	-	hypothetical protein
1611	 35.23	0	1712932..1715301	-	789	157164804	-	CCC13826_2152	-	molybdenum-pterin binding protein
1612	 27.41	-2	1715366..1715905	+	179	157165338	-	CCC13826_2150	-	30S ribosomal protein S20
1613	 37.23	0	1715924..1718284	-	786	157163979	-	CCC13826_2149	-	phosphoglucosamine mutase
1614	 40.60	0	1718277..1720121	-	614	157165505	lspA	CCC13826_2148	-	lipoprotein signal peptidase
1615	 43.48	0	1720212..1720625	+	137	157165613	-	CCC13826_2146	-	thioesterase family protein
1616	 39.12	0	1720775..1721413	+	212	157165197	-	CCC13826_2145	-	hypothetical protein
1617	 38.03	0	1721421..1721888	-	155	157165587	-	CCC13826_2144	-	hypothetical protein
1618	 43.68	0	1721900..1722334	-	144	157165158	moaE	CCC13826_2143	-	molybdopterin converting factor, subunit 2
1619	 45.96	+1	1722642..1723781	+	379	157164290	nspC	CCC13826_2141	-	carboxynorspermidine decarboxylase
1620	 26.98	-2	1723791..1723916	+	41	157165501	gdhA	CCC13826_2140	-	glutamate dehydrogenase, NADP-specific
1621	 43.55	0	1724063..1724659	-	198	157165655	-	CCC13826_2139	-	DJ-1/PfpI family protein
1622	 42.09	0	1724894..1725841	+	315	157165024	-	CCC13826_2138	-	formate dehydrogenase, cytochrome B subunit
1623	 39.14	0	1725988..1726590	+	200	157165403	-	CCC13826_2136	-	translation initiation factor IF-3
1624	 46.18	+1	1726863..1727609	+	248	157164928	selD	CCC13826_2135	-	selenide, water dikinase
1625	 42.35	0	1727722..1728342	+	206	157165400	-	CCC13826_2134	-	nitroreductase family protein
1626	 36.22	0	1728430..1732515	+	1361	157164324	-	CCC13826_2133	-	YbaK
1627	 37.40	0	1732508..1733368	+	286	157164620	-	CCC13826_2132	-	ATP phosphoribosyltransferase regulatory subunit
1628	 45.16	+1	1733371..1734621	+	416	157165191	purA	CCC13826_2131	-	adenylosuccinate synthetase
1629	 38.30	0	1734618..1735040	+	140	157164985	-	CCC13826_2130	-	hypothetical protein
1630	 42.91	0	1735040..1735603	+	187	157165534	-	CCC13826_2129	-	ATPase, AAA family protein
1631	 34.36	0	1735692..1736273	+	193	157164088	-	CCC13826_2128	-	hypothetical protein
1632	 45.75	+1	1736326..1739586	-	1086	157164628	carB	CCC13826_2127	-	carbamoyl phosphate synthase large subunit
1633	 40.14	0	1739586..1740305	-	239	157164160	-	CCC13826_2126	-	putative hemagglutinin/hemolysin-related protein
1634	 44.61	+1	1740331..1741368	-	345	157165639	-	CCC13826_2125	-	cell shape determining protein MreB
1635	 42.58	0	1741378..1742610	-	410	157165299	clpX	CCC13826_2124	-	ATP-dependent protease ATP-binding subunit
1636	 44.97	+1	1743423..1743869	-	148	157165313	fabZ	CCC13826_2122	-	(3R)-hydroxymyristoyl-ACP dehydratase
1637	 42.62	0	1743980..1745056	-	358	157164337	-	CCC13826_2121	-	putative orphan protein
1638	 37.60	0	1745083..1745832	-	249	157163939	-	CCC13826_2120	-	putative ABC transporter, ATP-binding protein
1639	 41.56	0	1745829..1746509	-	226	157165480	-	CCC13826_2119	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1640	 41.07	0	1746506..1747306	-	266	157165589	-	CCC13826_2118	-	peptide ABC transporter, permease protein
1641	 40.04	0	1747303..1748241	-	312	157164487	pepD	CCC13826_2117	-	dipeptidase
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.