IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1425	 44.88	+1	1519981..1520976	+	331	157164567	-	CCC13826_0511	-	histidinol-phosphate aminotransferase (imidazole acetol-phosphate transaminase)
1426	 49.33	+1	1521507..1522175	-	222	157165581	-	CCC13826_0512	-	hypothetical protein
1427	 48.11	+1	1522254..1523072	-	272	157165165	fliG	CCC13826_0513	-	enoyl-(acyl carrier protein) reductase
1428	 45.76	+1	1523241..1523924	-	227	157165161	tpiA	CCC13826_0514	-	triosephosphate isomerase
1429	 46.00	+1	1523928..1525127	-	399	157164697	pgk	CCC13826_0515	-	phosphoglycerate kinase
1430	 46.15	+1	1525144..1526142	-	332	157164277	gap	CCC13826_0516	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1431	 43.42	0	1526222..1527103	+	293	157164140	gerC	CCC13826_0518	-	gerC2 protein
1432	 42.38	0	1527087..1528070	-	327	157165450	-	CCC13826_0517	-	hypothetical protein
1433	 40.17	0	1528174..1529109	+	311	157165551	-	CCC13826_0519	-	exodeoxyribonuclease 7 large subunit
1434	 28.11	-2	1529110..1530315	-	401	157165735	-	CCC13826_0520	-	phosphoserine aminotransferase, (psat)
1435	 33.90	-1	1530308..1531372	-	354	157164094	-	CCC13826_0521	-	UDP-N-acetylglucosamine 2-epimerase
1436	 26.61	-2	1531374..1532399	-	341	157164389	-	CCC13826_0522	-	hypothetical protein
1437	 28.80	-1	1532414..1533493	-	359	157165216	trpE	CCC13826_0523	-	anthranilate synthase, component I
1438	 29.70	-1	1533511..1535298	-	595	157165540	asnB	CCC13826_0524	-	asparagine synthase (glutamine-hydrolyzing)
1439	 28.94	-1	1535347..1535961	-	204	157163887	-	CCC13826_0525	-	phosphatidylserine decarboxylase proenzyme
1440	 29.45	-1	1536402..1537277	-	291	157164125	gtp	CCC13826_0526	-	GTP-binding protein
1441	 29.10	-1	1537912..1539306	-	464	157164657	-	CCC13826_0528	-	cytosol aminopeptidase
1442	 28.59	-2	1539316..1540602	-	428	157165312	-	CCC13826_0529	-	DedA family protein
1443	 30.85	-1	1540599..1541606	-	335	157164456	-	CCC13826_0530	-	adenine phosphoribosyltransferase (aprt)
1444	 28.08	-2	1542931..1543596	-	221	157165765	-	CCC13826_0532	-	hypothetical protein
1445	 32.44	-1	1543593..1544603	-	336	157165141	-	CCC13826_0533	-	putative carbamoyl phosphate synthase large subunit
1446	 27.05	-2	1544593..1545276	-	227	157164711	-	CCC13826_0534	-	Ser/Thr protein phosphatase family protein
1447	 25.79	-2	1545273..1546412	-	379	157165047	-	CCC13826_0535	-	hypothetical protein
1448	 30.52	-1	1546427..1548415	-	662	157165663	asnB	CCC13826_0536	-	asparagine synthase (glutamine-hydrolyzing)
1449	 33.25	-1	1548417..1549631	-	404	157163982	-	CCC13826_0537	-	putative integral membrane protein
1450	 27.50	-2	1549594..1550502	-	302	157164522	-	CCC13826_0538	-	hypothetical protein
1451	 33.74	-1	1550606..1551592	-	328	157164630	-	CCC13826_0539	-	hypothetical protein
1452	 32.87	-1	1551606..1552694	-	362	157164115	-	CCC13826_0540	-	thioesterase family protein
1453	 34.55	0	1552698..1553273	-	191	157164668	-	CCC13826_0541	-	hexapaptide repeat-containing transferase
1454	 33.13	-1	1553273..1554238	-	321	157165229	-	CCC13826_0542	-	uracil-DNA glycosylase superfamily protein
1455	 38.32	0	1554271..1555854	-	527	157165706	argS	CCC13826_0543	-	arginyl-tRNA synthetase
1456	 40.54	0	1555864..1556085	-	73	157163974	-	CCC13826_0544	-	twin arginine-targeting protein translocase
1457	 39.71	0	1556137..1556748	-	203	157164565	gmk	CCC13826_0545	-	guanylate kinase
1458	 38.60	0	1556749..1558305	-	518	157164841	-	CCC13826_0546	-	hypothetical protein
1459	 40.03	0	1558362..1559123	-	253	157165085	fliR	CCC13826_0547	-	flagellar biosynthesis protein FliR
1460	 37.98	0	1559214..1559858	-	214	157164016	mda	CCC13826_0548	-	modulator of drug activity
1461	 43.27	0	1559858..1560904	-	348	157164319	tsf	CCC13826_0550	-	elongation factor Ts
1462	 43.73	0	1560922..1561710	-	262	157164805	rpsB	CCC13826_0551	-	30S ribosomal protein S2
1463	 45.35	+1	1561901..1563040	-	379	157164258	iadA	CCC13826_0552	-	isoaspartyl dipeptidase
1464	 35.71	0	1563051..1563260	-	69	157165658	-	CCC13826_0553	-	hypothetical protein
1465	 44.17	0	1563250..1563969	-	239	157165537	-	CCC13826_0554	-	hypothetical protein
1466	 47.15	+1	1563980..1564594	-	204	157165754	ribE	CCC13826_0555	-	riboflavin synthase subunit alpha
1467	 34.19	0	1564907..1565023	+	38	157164037	-	CCC13826_0557	-	hypothetical protein
1468	 48.16	+1	1565020..1565862	-	280	157164442	-	CCC13826_0556	-	peptide methionine sulfoxide reductase MsrA/msrB
1469	 39.85	0	1566932..1567867	-	311	157165124	accA	CCC13826_0559	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1470	 42.00	0	1567869..1569080	-	403	157164063	fabF	CCC13826_0560	-	3-oxoacyl-(acyl carrier protein) synthase II
1471	 36.32	0	1569115..1569348	-	77	157164884	acpP	CCC13826_0561	-	acyl carrier protein
1472	 44.22	0	1569435..1570178	-	247	157164484	fabG	CCC13826_0562	-	3-ketoacyl-(acyl-carrier-protein) reductase
1473	 42.76	0	1570215..1571678	-	487	157164042	gpmI	CCC13826_0563	-	phosphoglyceromutase
1474	 43.22	0	1572826..1573341	+	171	157163994	-	CCC13826_0565	-	hypothetical protein
1475	 43.10	0	1573346..1574563	+	405	157165724	murD	CCC13826_0566	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1476	 40.39	0	1574735..1576618	+	627	157165086	-	CCC13826_0567	-	hypothetical protein
1477	 42.24	0	1576686..1581986	+	1766	157163912	-	CCC13826_0568	-	hypothetical protein
1478	 28.19	-2	1582376..1583269	-	297	157164325	-	CCC13826_0638	-	lipoprotein
1479	 30.56	-1	1583269..1583880	-	203	157165013	-	CCC13826_2272	-	glutathionylspermidine synthase family protein
1480	 32.74	-1	1583895..1585235	-	446	157165548	-	CCC13826_2273	-	bacteriophage replication gene A protein
1481	 30.49	-1	1585467..1585853	-	128	157165775	-	CCC13826_2274	-	protein yitk
1482	 40.54	0	1585894..1586115	-	73	157164240	-	CCC13826_1101	-	putative phosphonate uptake transporter
1483	 26.58	-2	1586807..1587043	+	78	157164047	-	CCC13826_1102	-	sensory box protein
1484	 26.27	-2	1587044..1587496	+	150	157164666	-	CCC13826_2275	-	hypothetical protein
1485	 27.97	-2	1587598..1588380	-	260	157164933	-	CCC13826_2082	-	site-specific recombinase, phage integrase family protein
1486	 31.44	-1	1588755..1589966	-	403	157165333	-	CCC13826_1099	-	radical SAM domain-containing protein
1487	 30.60	-1	1590015..1591184	-	389	157164249	-	CCC13826_1100	-	ABC transporter ATP-binding protein YojI
1488	 28.53	-2	1591228..1592352	-	374	157164938	-	CCC13826_2276	-	zonular occludens toxin (Zot) family protein
1489	 32.21	-1	1592354..1592800	-	148	157165126	-	CCC13826_2277	-	hypothetical protein
1490	 31.92	-1	1592797..1594923	-	708	157164149	-	CCC13826_0183	-	hypothetical protein
1491	 29.08	-1	1594955..1595095	+	46	157164684	-	CCC13826_0184	-	hypothetical protein
1492	 40.54	0	1595477..1595698	-	73	157165292	-	CCC13826_2278	-	putative phosphonate uptake transporter
1493	 27.00	-2	1596412..1596648	+	78	157165246	-	CCC13826_0164	-	hypothetical protein
1494	 26.27	-2	1596649..1597101	+	150	157165739	-	CCC13826_2078	-	hypothetical protein
1495	 28.38	-2	1597203..1598111	-	302	157163863	-	CCC13826_2077	-	putative phage integrase
1496	 31.44	-1	1598360..1599571	-	403	157164506	-	CCC13826_0020	-	bacteriophage replication gene A protein
1497	 30.60	-1	1599620..1600789	-	389	157164174	-	CCC13826_0019	-	hypothetical protein
1498	 28.53	-2	1600833..1601957	-	374	157164617	-	CCC13826_2075	-	zonular occludens toxin (Zot) family protein
1499	 32.21	-1	1601959..1602405	-	148	157165324	-	CCC13826_2074	-	hypothetical protein
1500	 31.92	-1	1602402..1604528	-	708	157165226	-	CCC13826_1299	-	hypothetical protein
1501	 29.08	-1	1604560..1604700	+	46	157164651	-	CCC13826_1298	-	hypothetical protein
1502	 40.54	0	1605082..1605303	-	73	157164179	-	CCC13826_2279	-	putative phosphonate uptake transporter
1503	 27.00	-2	1606017..1606253	+	78	157165084	-	CCC13826_0185	-	sensory box protein
1504	 26.27	-2	1606254..1606706	+	150	157164564	-	CCC13826_0186	-	hypothetical protein
1505	 28.19	-2	1606808..1607701	-	297	157164010	-	CCC13826_0706	-	site-specific recombinase, phage integrase family protein
1506	 32.74	-1	1608327..1609667	-	446	157164355	-	CCC13826_0189	-	bacteriophage replication gene A protein
1507	 31.50	-1	1609899..1611041	-	380	157163911	-	CCC13826_0190	-	type II and III secretion system protein
1508	 27.82	-2	1610992..1612116	-	374	157164228	-	CCC13826_0191	-	hypothetical protein
1509	 28.97	-1	1612118..1612438	-	106	157165749	-	CCC13826_0192	-	hypothetical protein
1510	 32.55	-1	1612537..1613946	-	469	157164946	-	CCC13826_0193	-	hypothetical protein
1511	 42.47	0	1614489..1614707	-	72	157165364	-	CCC13826_0196	-	hypothetical protein
1512	 35.98	0	1614801..1615178	-	125	157164964	-	CCC13826_0197	-	hypothetical protein
1513	 26.19	-2	1615472..1615681	+	69	157165224	-	CCC13826_0198	-	hypothetical protein
1514	 27.35	-2	1615681..1616148	+	155	157163879	-	CCC13826_0199	-	hypothetical protein
1515	 44.11	0	1616627..1618399	-	590	157165777	-	CCC13826_0200	-	molybdopterin oxidoreductase domain-containing protein
1516	 38.53	0	1618448..1618870	-	140	157165242	-	CCC13826_0201	-	molybdopterin oxidoreductase Fe4S4 subunit
1517	 43.58	0	1620023..1620715	+	230	157165218	-	CCC13826_0203	-	ABC transporter, permease protein
1518	 41.93	0	1620725..1621678	+	317	157165036	-	CCC13826_0204	-	protein YabJ
1519	 35.92	0	1621924..1622619	+	231	157164114	-	CCC13826_0205	-	hypothetical protein
1520	 36.78	0	1622609..1622782	+	57	157163942	-	CCC13826_0206	-	Tat pathway signal sequence domain-containing protein
1521	 43.02	0	1623416..1625635	+	739	157165207	ttdA	CCC13826_0208	-	fumarate hydratase
1522	 45.33	+1	1625637..1626278	+	213	157164783	lemA	CCC13826_0209	-	cytoplasmic membrane protein
1523	 25.00	-2	1626309..1626452	+	47	157164101	-	CCC13826_0210	-	hypothetical protein
1524	 45.72	+1	1626498..1627280	+	260	157165670	fdhD	CCC13826_0211	-	formate dehydrogenase accessory protein
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.