IslandPathversion 1.0

IslandPath Analysis: Campylobacter concisus 13826



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.18 STD DEV: 5.26
Campylobacter concisus 13826, complete genome - 1..2052007
1929 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1101	 24.17	-2	1184352..1184471	-	39	157164152	-	CCC13826_0586	-	signal-transduction sensor protein
1102	 40.94	0	1184440..1184991	+	183	157164662	-	CCC13826_0585	-	methyl-accepting chemotaxis sensory transducer
1103	 44.78	+1	1185013..1186113	-	366	157164977	prfB	CCC13826_0584	-	peptide chain release factor 2
1104	 41.36	0	1186234..1187055	+	273	157165494	panC	CCC13826_0583	-	pantoate--beta-alanine ligase
1105	 41.80	0	1187058..1188368	+	436	157164518	-	CCC13826_0582	-	hypothetical protein
1106	 38.37	0	1188365..1189357	+	330	157165572	-	CCC13826_0581	-	ATP/GTP hydrolase
1107	 23.33	-2	1189634..1189753	+	39	157164917	-	CCC13826_0580	-	ABC transporter, ATP-binding protein
1108	 41.97	0	1190308..1190724	-	138	157164465	-	CCC13826_0579	-	hypothetical protein
1109	 48.60	+1	1190705..1191274	-	189	157164297	gmhA	CCC13826_0578	-	phosphoheptose isomerase
1110	 44.47	+1	1191249..1192667	-	472	157165372	-	CCC13826_0577	-	udp-N-acetylglucosamine--n-acetylmuramyl-(pentapeptide)pyrophosphoryl -undecaprenol n-acetylglucosamine transferase (undecaprenyl-PP-MurNAc-pentapeptide-udpglcnac glcnactransferase)
1111	 43.03	0	1192660..1193649	-	329	157164747	rfaD	CCC13826_0576	-	ADP-glyceromanno-heptose 6-epimerase
1112	 39.73	0	1193646..1194161	-	171	157164309	-	CCC13826_0575	-	cell division
1113	 39.60	0	1194254..1194556	+	100	157164040	-	CCC13826_0084	-	glutamate racemase 2
1114	 30.77	-1	1194695..1194889	-	64	157165193	-	CCC13826_0083	-	DedA family protein
1115	 44.02	0	1194921..1195472	-	183	157165020	cysE	CCC13826_0082	-	serine O-acetyltransferase
1116	 45.70	+1	1195477..1196382	-	301	157164579	cysK	CCC13826_0081	-	cysteine synthase A
1117	 39.61	0	1196476..1197144	-	222	157165470	-	CCC13826_0080	-	endonuclease III
1118	 40.00	0	1197141..1197905	-	254	157165038	metN	CCC13826_0079	-	D-methionine ABC transporter, ATP-binding protein
1119	 41.82	0	1197902..1200847	-	981	157165294	mfd	CCC13826_0078	-	transcription-repair coupling factor
1120	 42.23	0	1200828..1202030	-	400	157163931	-	CCC13826_0077	-	valyl-tRNA synthetase
1121	 39.68	0	1202027..1203601	-	524	157165714	-	CCC13826_0076	-	GGDEF domain-containing protein
1122	 35.93	0	1203582..1204121	-	179	157165113	-	CCC13826_0075	-	penicillin-binding protein
1123	 39.33	0	1204125..1206590	-	821	157164836	leuS	CCC13826_0074	-	leucyl-tRNA synthetase
1124	 35.99	0	1206599..1206937	-	112	157164293	-	CCC13826_0073	-	MacA
1125	 38.79	0	1206947..1207918	-	323	157164195	secF	CCC13826_0072	-	preprotein translocase subunit SecF
1126	 42.53	0	1207921..1209453	-	510	157164627	secD	CCC13826_0071	-	preprotein translocase subunit SecD
1127	 35.16	0	1209501..1209773	-	90	157164205	yajC	CCC13826_0070	-	preprotein translocase subunit YajC
1128	 37.80	0	1209878..1211041	+	387	157165710	lnt	CCC13826_0069	-	apolipoprotein N-acyltransferase
1129	 39.97	0	1211084..1212289	-	401	157165275	metK	CCC13826_0068	-	S-adenosylmethionine synthetase
1130	 42.84	0	1212428..1213795	+	455	157164440	-	CCC13826_0067	-	serine/threonine transporter SstT
1131	 40.19	0	1213883..1215604	+	573	157163913	-	CCC13826_0066	-	rhomboid family protein
1132	 38.89	0	1215606..1216055	+	149	157165443	-	CCC13826_0065	-	hypothetical protein
1133	 42.13	0	1216107..1218176	+	689	157164973	-	CCC13826_0064	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1134	 34.55	0	1218173..1218994	+	273	157163902	truB	CCC13826_0063	-	tRNA pseudouridine synthase B
1135	 39.83	0	1218988..1219218	+	76	157164322	csrA	CCC13826_0062	-	carbon storage regulator
1136	 36.83	0	1219215..1219958	+	247	157165722	ispE	CCC13826_0061	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1137	 40.57	0	1219970..1220425	+	151	157164927	smpB	CCC13826_0060	-	SsrA-binding protein
1138	 33.84	-1	1220434..1221030	+	198	157164382	-	CCC13826_0059	-	thioredoxin domain-containing protein
1139	 40.46	0	1221093..1221527	+	144	157164065	flgB	CCC13826_0058	-	flagellar basal body rod protein FlgB
1140	 42.71	0	1221536..1222036	+	166	157165285	flgC	CCC13826_0057	-	flagellar basal body rod protein FlgC
1141	 37.07	0	1222036..1222329	+	97	157164609	fliE	CCC13826_0056	-	flagellar hook-basal body protein FliE
1142	 41.68	0	1222338..1224170	+	610	157164916	-	CCC13826_0055	-	hypothetical protein
1143	 34.42	0	1224259..1224720	-	153	157164492	-	CCC13826_0054	-	hypothetical protein
1144	 36.06	0	1224768..1225721	-	317	157164099	hemH	CCC13826_0053	-	ferrochelatase
1145	 37.01	0	1225721..1226590	-	289	157164395	-	CCC13826_0052	-	thiazole biosynthesis protein ThiH
1146	 44.51	+1	1226761..1229319	+	852	157164208	alaS	CCC13826_0051	-	alanyl-tRNA synthetase
1147	 37.75	0	1229316..1229813	+	165	157164607	-	CCC13826_0050	-	hypothetical protein
1148	 37.20	0	1229813..1230355	+	180	157165322	-	CCC13826_0049	-	Maf-like protein
1149	 44.43	0	1230352..1232280	+	642	157165718	-	CCC13826_0048	-	succinate dehydrogenase, iron-sulfur protein subunit
1150	 37.46	0	1232289..1232603	+	104	157164372	-	CCC13826_0047	-	hypothetical protein
1151	 33.16	-1	1232676..1233251	+	191	157164847	-	CCC13826_0046	-	hypothetical protein
1152	 38.70	0	1233305..1234012	+	235	157165424	-	CCC13826_0045	-	iron(III) dicitrate-binding protein
1153	 42.35	0	1234296..1236314	-	672	157163964	glyS	CCC13826_0043	-	glycyl-tRNA synthetase subunit beta
1154	 31.41	-1	1236311..1236466	-	51	157165533	-	CCC13826_0042	-	putative ribosomal RNA adenine dimethylase
1155	 39.91	0	1236467..1237849	-	460	157164312	-	CCC13826_0041	-	putative endonuclease/exonuclease/phosphatase
1156	 41.88	0	1237846..1238325	-	159	157164727	-	CCC13826_0040	-	RNA methyltransferase
1157	 38.19	0	1238400..1239572	-	390	157164540	-	CCC13826_0039	-	tRNA nucleotidyltransferase/poly(A) polymerase family protein
1158	 42.45	0	1239532..1239948	-	138	157164854	-	CCC13826_0038	-	OorC subunit of 2-oxoglutarate:acceptor oxidoreductase
1159	 40.24	0	1239945..1240190	-	81	157164156	-	CCC13826_0037	-	hypothetical protein
1160	 46.72	+1	1240187..1241254	-	355	157163999	leuB	CCC13826_0036	-	3-isopropylmalate dehydrogenase
1161	 41.77	0	1241264..1241749	-	161	157164743	-	CCC13826_0035	-	3-isopropylmalate dehydratase small subunit
1162	 43.11	0	1242029..1242928	-	299	157164296	-	CCC13826_0034	-	hypothetical protein
1163	 45.30	+1	1243033..1243926	-	297	157164036	-	CCC13826_0033	-	hypothetical protein
1164	 43.67	0	1243937..1244536	-	199	157164784	-	CCC13826_0032	-	LysE family translocator protein
1165	 32.59	-1	1244586..1244720	+	44	157165395	-	CCC13826_0031	-	hypothetical protein
1166	 40.85	0	1244848..1245339	-	163	157164091	-	CCC13826_0030	-	hypothetical protein
1167	 43.17	0	1245423..1246439	-	338	157165109	-	CCC13826_0029	-	L-asparaginase
1168	 40.77	0	1246555..1246890	-	111	157165598	-	CCC13826_0028	-	branched-chain amino acid transport protein
1169	 38.02	0	1247699..1248658	+	319	157164139	-	CCC13826_2180	-	Sel1 repeat-containing protein
1170	 33.56	-1	1248668..1249108	+	146	157164336	-	CCC13826_2181	-	integral membrane protein
1171	 42.98	0	1249933..1250046	-	37	157164606	-	CCC13826_2183	-	HD/HDIG/KH domain-containing protein
1172	 47.78	+1	1250052..1250840	-	262	157165544	flgG	CCC13826_2184	-	flagellar basal body rod protein FlgG
1173	 40.74	0	1250856..1251665	-	269	157164118	-	CCC13826_2185	-	flagellar basal-body rod protein
1174	 41.80	0	1251816..1253669	+	617	157164653	-	CCC13826_2186	-	RNA polymerase sigma factor RpoD
1175	 36.84	0	1254164..1255048	-	294	157164686	-	CCC13826_2187	-	hypothetical protein
1176	 47.25	+1	1255058..1256350	-	430	157165498	hisD	CCC13826_2188	-	histidinol dehydrogenase
1177	 39.08	0	1256347..1257198	-	283	157163856	-	CCC13826_2073	-	1-aminocyclopropane-1-carboxylate deaminase
1178	 40.75	0	1257191..1258282	-	363	157164388	-	CCC13826_2072	-	putative chemotaxis protein MotB
1179	 37.90	0	1258279..1259592	-	437	157165172	-	CCC13826_2071	-	hypothetical protein
1180	 44.32	0	1259597..1260661	-	354	157165707	fbaA	CCC13826_2070	-	fructose-bisphosphate aldolase
1181	 39.32	0	1260677..1261495	-	272	157164251	-	CCC13826_2069	-	holo-[acyl-carrier-protein] synthase
1182	 43.02	0	1263565..1263822	-	85	157164547	-	CCC13826_2066	-	mercuric transport protein periplasmic component
1183	 39.51	0	1263815..1264138	-	107	157165067	-	CCC13826_2065	-	hypothetical protein
1184	 42.78	0	1264135..1265214	-	359	157165649	-	CCC13826_2064	-	DNA-binding response regulator
1185	 38.10	0	1265306..1265473	+	55	157164224	-	CCC13826_2063	-	hypothetical protein
1186	 37.82	0	1265475..1266344	+	289	157164780	-	CCC13826_2062	-	hypothetical protein
1187	 41.30	0	1266353..1266892	+	179	157165422	-	CCC13826_2061	-	thioesterase superfamily protein
1188	 34.92	0	1267089..1268351	+	420	157163930	-	CCC13826_2060	-	outer membrane protein
1189	 36.81	0	1268465..1268896	+	143	157165366	rbn	CCC13826_2059	-	tRNA-processing ribonuclease BN
1190	 34.19	0	1268851..1268967	+	38	157165042	-	CCC13826_2057	-	hypothetical protein
1191	 42.35	0	1268950..1269759	-	269	157165461	-	CCC13826_2058	-	polyphosphate kinase 2 superfamily protein
1192	 42.82	0	1269867..1271594	+	575	157164820	-	CCC13826_2056	-	divalent cation transporter
1193	 28.85	-1	1271697..1271852	-	51	157164545	-	CCC13826_2055	-	hypothetical protein
1194	 32.48	-1	1272146..1272262	-	38	157163988	-	CCC13826_2054	-	hypothetical protein
1195	 44.30	0	1272259..1272969	-	236	157165128	kdsB	CCC13826_2053	-	3-deoxy-manno-octulosonate cytidylyltransferase
1196	 43.37	0	1272966..1274429	-	487	157164363	thrC	CCC13826_2052	-	threonine synthase
1197	 38.90	0	1275704..1276834	-	376	157164603	-	CCC13826_2049	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
1198	 39.47	0	1277703..1278305	+	200	157164252	dnaQ	CCC13826_2047	-	DNA polymerase III epsilon subunit
1199	 42.41	0	1278454..1280325	-	623	157164553	dnaK	CCC13826_2046	-	molecular chaperone DnaK
1200	 41.44	0	1280357..1280899	-	180	157165150	grpE	CCC13826_2045	-	co-chaperone GrpE
39.18	MEAN

5.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.