version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 932 25.60 0 928476..928979 - 167 71083640 pgpA SAR11_0944 - phosphatidylglycerophosphatase A 933 24.73 -1 928972..930087 - 371 71083641 ispD SAR11_0945 - IspD/ispF bifunctional enzyme 934 21.55 -1 930121..931902 + 593 71083642 ntrY SAR11_0946 - nitrogen regulation protein ntrY 935 26.11 0 931902..933257 + 451 71083643 ntrX SAR11_0948 - nitrogen assimilation regulatory protein ntrX 936 27.87 0 933258..934649 + 463 71083644 trkA SAR11_0949 - potassium transporter peripheral membrane component 937 19.65 -2 934654..936063 + 469 71083645 - SAR11_0950 - TrkH-like cation transport protein 938 38.52 +2 936342..937382 + 346 71083646 yhdW SAR11_0953 - ABC transporter 939 30.89 0 937448..938593 + 381 71083647 yhdX SAR11_0954 - amino acid ABC transporter 940 29.43 0 938593..939873 + 426 71083648 yhdY SAR11_0955 - putative amino-acid ABC transporter permease protein yhdY 941 31.29 0 939877..940611 + 244 71083649 yhdZ SAR11_0957 - general L-amino acid transport ATP-binding protein 942 24.19 -1 940786..941157 + 123 71083650 - SAR11_0958 - transcription regulator 943 29.45 0 941232..942389 + 385 71083651 - SAR11_0959 - hypothetical protein 944 29.72 0 942739..945366 + 875 71083652 valS SAR11_0960 - valine-tRNA ligase 945 36.53 +1 945366..947084 + 572 71083653 ilvD SAR11_0961 - dihydroxy-acid dehydratase 946 26.68 0 947084..948286 + 400 71083654 manC SAR11_0962 - mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase 947 26.58 0 948344..948565 - 73 71083655 - SAR11_0963 - hypothetical protein 948 26.72 0 948678..949040 + 120 71083656 - SAR11_0964 - ferric-uptake regulator 949 30.83 0 949040..949438 + 132 71083657 - SAR11_0965 - hypothetical protein 950 36.14 +1 949453..950451 + 332 71083658 yiaK SAR11_0966 - oxidoreductase YiaK 951 27.28 0 950443..951219 - 258 71083659 xthA SAR11_0967 - exodeoxyribonuclease III 952 30.19 0 951219..951536 - 105 71083660 - SAR11_0968 - HesB-like domain-containing protein 953 26.97 0 951587..952702 + 371 71083661 dgtP SAR11_0969 - dGTPase 954 27.34 0 952702..954435 + 577 71083662 argS SAR11_0970 - arginine-tRNA ligase 955 18.94 -2 954435..954698 + 87 71083663 - SAR11_0971 - hypothetical protein 956 24.29 -1 954688..955638 + 316 71083664 - SAR11_0972 - glycosyl hydrolase 957 27.40 0 955647..956387 + 246 71083665 scpA SAR11_0973 - segregation and condensation protein a 958 30.06 0 956384..957085 + 233 71083666 scpB SAR11_0974 - segregation and condensation protein b 959 33.33 0 957128..957328 + 66 71083667 tatA SAR11_0975 - twin-arginine translocation protein TatA/E 960 31.98 0 957334..957555 + 73 71083668 tatB SAR11_0976 - twin-arginine translocation protein TatB 961 28.89 0 957542..958306 + 254 71083669 tatC SAR11_0977 - sec-independent protein translocase protein tatC 962 30.08 0 958299..959558 + 419 71083670 serS SAR11_0978 - serine-tRNA ligase 963 29.12 0 959612..959896 + 94 71083671 yajC SAR11_0979 - hypothetical protein 964 29.60 0 959909..961462 + 517 71083672 secD SAR11_0980 - protein-export membrane protein SECD 965 26.80 0 961462..962349 + 295 71083673 secF SAR11_0981 - preprotein translocase chain secF 966 33.50 +1 962352..962945 - 197 71083674 - SAR11_0982 - hypothetical protein 967 32.08 0 962973..965852 - 959 71083675 uvrA SAR11_0983 - excinuclease ABC chain A 968 34.20 +1 965942..966400 + 152 71083676 ssb SAR11_0984 - single-strand binding protein (ssb) 969 31.22 0 966406..968955 + 849 71083677 gyrA SAR11_0985 - DNA gyrase subunit A 970 23.23 -1 968955..969449 + 164 71083678 kdtB SAR11_0986 - pantetheine-phosphate adenylyltransferase 971 33.33 0 969517..969996 + 159 71083679 ppiB SAR11_0987 - peptidylprolyl isomerase 972 30.73 0 970015..971127 + 370 71083680 tgt SAR11_0988 - queuine tRNA-ribosyltransferase 973 16.30 -2 971129..971263 - 44 71083681 - SAR11_0989 - hypothetical protein 974 34.36 +1 971424..972200 - 258 71083682 - SAR11_0991 - M48 family peptidase 975 28.29 0 972375..972989 + 204 71083683 - SAR11_0992 - hypothetical protein 976 26.32 0 972986..975037 - 683 71083684 recG SAR11_0993 - ATP-dependent DNA helicase recG 977 25.47 0 975062..975328 + 88 71083685 - SAR11_0994 - hypothetical protein 978 27.55 0 975511..976392 + 293 71083686 rarD SAR11_0995 - rarD protein 979 26.65 0 976379..977380 + 333 71083687 mltB SAR11_0996 - membrane-bound lytic transglycolase-related protein 980 22.13 -1 977370..978128 + 252 71083688 - SAR11_0997 - hypothetical protein 981 30.82 0 978121..979272 + 383 71083689 dacC SAR11_0998 - serine-type D-Ala-D-Ala carboxypeptidase 982 21.08 -1 979265..979876 + 203 71083690 tmk SAR11_0999 - thymidylate kinase (dTMP kinase) 983 20.90 -2 979881..980813 + 310 71083691 holB SAR11_1000 - DNA polymerase III 984 28.02 0 980814..982355 + 513 71083692 metS SAR11_1001 - methionyl-tRNA synthetase 985 26.01 0 982348..983112 + 254 71083693 - SAR11_1002 - TatD related DNase 986 25.26 0 983112..983891 + 259 71083694 - SAR11_1003 - metallo-beta-lactamase family protein 987 26.51 0 983880..984392 - 170 71083695 bsaA SAR11_1004 - glutathione peroxidase 988 31.07 0 984438..985544 - 368 71083696 nhaA SAR11_1005 - Na+/H+ antiporter 1 989 25.93 0 985615..986127 - 170 71083697 - SAR11_1006 - hypothetical protein 990 25.18 0 986302..986583 + 93 71083698 ndufs4 SAR11_1007 - ETC complex I subunit region 991 32.83 0 986586..987578 + 330 71083699 sbmA SAR11_1008 - putative transporter 992 31.54 0 987578..988525 + 315 71083700 glpX SAR11_1009 - fructose 1,6-bisphosphatase II 993 23.66 -1 988522..990216 + 564 71083701 recJ SAR11_1010 - single-stranded-DNA-specific exonuclease RecJ 994 23.02 -1 990347..990598 + 83 71083702 - SAR11_1011 - excinuclease ABC subunit C 995 23.84 -1 990598..992703 + 701 71083703 - SAR11_1012 - glycosyl transferase group 1 996 22.36 -1 992704..993414 + 236 71083704 yxkH SAR11_1013 - polysaccharide deacetylase-like protein 997 25.77 0 993416..994618 + 400 71083705 - SAR11_1014 - putative pyridoxamine 5-phosphate-dependent dehydrase 998 22.63 -1 994615..995427 + 270 71083706 - SAR11_1015 - NAD dependent epimerase/dehydratase f 999 21.78 -1 995434..996108 + 224 71083707 - SAR11_1016 - hypothetical protein 1000 21.91 -1 996113..997066 + 317 71083708 - SAR11_1017 - hypothetical protein 1001 20.16 -2 997089..997862 - 257 71083709 - SAR11_1018 - methyltransferase FkbM 1002 29.68 0 997872..998828 - 318 71083710 xerD SAR11_1019 - integrase/recombinase xerD-like protein 1003 33.78 +1 999127..999570 + 147 71083711 - SAR11_1020 - acetyltransferase 1004 36.81 +1 999542..999829 + 95 71083712 ada SAR11_1021 - 6-O-methylguanine DNA methyltransferase 1005 34.44 +1 1000426..1001238 - 270 71083713 - SAR11_1022 - DMT family permease 1006 28.90 0 1001292..1002194 - 300 71083714 - SAR11_1023 - hypothetical protein 1007 27.76 0 1002194..1003486 - 430 71083715 hom SAR11_1025 - homoserine dehydrogenase 1008 25.78 0 1003487..1003711 - 74 71083716 - SAR11_1026 - hypothetical protein 1009 26.00 0 1003708..1004730 - 340 71083717 argC SAR11_1027 - N-acetyl-gamma-glutamyl-phosphate reductase 1010 34.22 +1 1004766..1005215 - 149 71083718 rpsI SAR11_1028 - ribosomal protein S9 1011 29.87 0 1005217..1005678 - 153 71083719 rplM SAR11_1029 - 50S ribosomal protein L13 1012 35.29 +1 1005891..1007219 + 442 71083720 metY SAR11_1030 - O-acetylhomoserine (thiol)-lyase 1013 25.82 0 1007212..1008222 - 336 71083721 coxW SAR11_1031 - cytochrome c oxidase assembly protein (isoform 1) 1014 20.27 -2 1008265..1008555 + 96 71083722 - SAR11_1032 - chorismate mutase II 1015 32.29 0 1008558..1008749 - 63 71083723 rpmG SAR11_1033 - ribosomal protein L33 1016 22.22 -1 1008751..1009128 - 125 71083724 merR SAR11_1034 - transcription regulator 1017 22.01 -1 1009118..1009426 - 102 71083725 himA SAR11_1035 - DNA-binding protein 1018 28.64 0 1009420..1010421 - 333 71083726 plsX SAR11_1036 - fatty acid/phospholipid synthesis protein PlsX 1019 36.07 +1 1010436..1010618 - 60 71083727 rpmF SAR11_1037 - 50S ribosomal protein L32 1020 21.79 -1 1010626..1011093 - 155 71083728 - SAR11_1038 - hypothetical protein 1021 25.38 0 1011092..1011556 + 154 71083729 - SAR11_1039 - hypothetical protein 1022 35.38 +1 1011564..1013669 - 701 71083730 hppA SAR11_1040 - membrane-bound proton-translocating pyrophosphatase 1023 23.33 -1 1013756..1014715 - 319 71083731 thiL SAR11_1041 - thiamine-phosphate kinase 1024 25.68 0 1014708..1015112 - 134 71083732 nusB SAR11_1042 - antitermination protein NusB 1025 29.46 0 1015115..1015501 - 128 71083733 ribH SAR11_1043 - riboflavin synthase 1026 26.07 0 1015501..1016601 - 366 71083734 ribA SAR11_1044 - GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase 1027 24.07 -1 1016588..1017181 - 197 71083735 ribB SAR11_1045 - riboflavin synthase subunit alpha 1028 24.24 -1 1017186..1018241 - 351 71083736 ribD SAR11_1046 - 5-amino-6-(5-phosphoribosylamino)uracil reductase 1029 31.37 0 1018267..1018725 - 152 71083737 ybaD SAR11_1047 - transcriptional regulator NrdR 1030 33.18 0 1018725..1020035 - 436 71083738 glyA SAR11_1048 - glycine hydroxymethyltransferase 1031 29.11 0 1020038..1020463 - 141 71083739 rpiB SAR11_1049 - ribose-5-phosphate isomerase 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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