IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
897	 28.44	0	874959..875510	+	183	71083606	rrf	SAR11_0909	-	ribosome recycling factor
898	 23.60	-1	875507..876184	+	225	71083607	-	SAR11_0910	-	putative undecaprenyl diphosphate synthase
899	 24.13	-1	876184..876846	+	220	71083608	cdsA	SAR11_0911	-	phosphatidate cytidylyltransferase
900	 21.08	-1	876848..878014	+	388	71083609	yaeM	SAR11_0912	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
901	 26.68	0	878022..880259	+	745	71083610	omp1	SAR11_0913	-	outer membrane protein omp1
902	 19.24	-2	880259..880783	+	174	71083611	ompH	SAR11_0914	-	Outer membrane protein (OmpH-like)
903	 33.79	+1	880790..881230	+	146	71083612	fabZ	SAR11_0915	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
904	 27.62	0	881283..882263	+	326	71083613	lpxD	SAR11_0916	-	glucosamine N-acyltransferase
905	 31.42	0	882260..883042	+	260	71083614	lpxA	SAR11_0917	-	acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase
906	 23.79	-1	883044..883829	+	261	71083615	-	SAR11_0918	-	hypothetical protein
907	 23.31	-1	883826..884962	+	378	71083616	lpxB	SAR11_0919	-	lipid-A-disaccharide synthase (lpxB)
908	 27.62	0	884939..886339	-	466	71083617	gltX	SAR11_0920	-	glutamyl-tRNA synthetase
909	 33.19	0	886362..887039	-	225	71083618	lexA	SAR11_0921	-	LexA repressor
910	 25.38	0	887128..887919	-	263	71083619	trpC	SAR11_0922	-	indole-3-glycerol phosphate synthase/anthranilate isomerase
911	 29.41	0	887912..888904	-	330	71083620	trpD	SAR11_0923	-	anthranilate phosphoribosyltransferase
912	 25.69	0	888901..889476	-	191	71083621	trpGD	SAR11_0924	-	anthranilate synthase component II
913	 27.29	0	889476..890930	-	484	71083622	trpE	SAR11_0925	-	anthranilate synthase component I-like protein
914	 22.71	-1	890930..892351	-	473	71083623	-	SAR11_0926	-	SurA-like protein
915	 25.76	0	892423..893148	+	241	71083624	tpiA	SAR11_0927	-	triosephosphate isomerase (TIM)
916	 33.00	0	893154..893453	+	99	71083625	secG	SAR11_0928	-	preprotein translocase SecG subunit
917	 30.81	0	893557..895455	+	632	71083626	-	SAR11_0929	-	hypothetical protein
918	 32.11	0	895457..895702	-	81	71083627	-	SAR11_0930	-	transmembrane protein
919	 31.58	0	895470..895697	+	75	71084063	-	SAR11_0931	-	putative transmembrane protein
920	 36.16	+1	895754..917707	+	7317	71083628	-	SAR11_0932	-	hypothetical protein
921	 31.23	0	917722..918435	+	237	71083629	acrA	SAR11_0933	-	AcrA-like protein
922	 29.21	0	918432..919766	+	444	71083630	-	SAR11_0934	-	AcrB-like protein
923	 29.10	0	919763..921865	+	700	71083631	-	SAR11_0935	-	peptidase M50
924	 35.43	+1	921991..922563	+	190	71083632	-	SAR11_0936	-	fimbrial protein pilin
925	 29.99	0	922651..924267	+	538	71083633	pyrG	SAR11_0937	-	CTP synthetase
926	 33.82	+1	924264..925088	+	274	71083634	kdsA	SAR11_0938	-	2-dehydro-3-deoxyphosphooctonate aldolase
927	 28.32	0	925089..926345	+	418	71083635	eno	SAR11_0939	-	enolase
928	 21.78	-1	926345..926647	+	100	71083636	divIC	SAR11_0940	-	septum formation initiator
929	 30.85	0	926637..927563	+	308	71083637	lipA	SAR11_0941	-	lipoyl synthase
930	 24.66	-1	927563..928000	+	145	71083638	-	SAR11_0942	-	hypothetical protein
931	 27.64	0	928018..928509	-	163	71083639	cinA	SAR11_0943	-	competence/damage-inducible protein CinA
932	 25.60	0	928476..928979	-	167	71083640	pgpA	SAR11_0944	-	phosphatidylglycerophosphatase A
933	 24.73	-1	928972..930087	-	371	71083641	ispD	SAR11_0945	-	IspD/ispF bifunctional enzyme
934	 21.55	-1	930121..931902	+	593	71083642	ntrY	SAR11_0946	-	nitrogen regulation protein ntrY
935	 26.11	0	931902..933257	+	451	71083643	ntrX	SAR11_0948	-	nitrogen assimilation regulatory protein ntrX
936	 27.87	0	933258..934649	+	463	71083644	trkA	SAR11_0949	-	potassium transporter peripheral membrane component
937	 19.65	-2	934654..936063	+	469	71083645	-	SAR11_0950	-	TrkH-like cation transport protein
938	 38.52	+2	936342..937382	+	346	71083646	yhdW	SAR11_0953	-	ABC transporter
939	 30.89	0	937448..938593	+	381	71083647	yhdX	SAR11_0954	-	amino acid ABC transporter
940	 29.43	0	938593..939873	+	426	71083648	yhdY	SAR11_0955	-	putative amino-acid ABC transporter permease protein yhdY
941	 31.29	0	939877..940611	+	244	71083649	yhdZ	SAR11_0957	-	general L-amino acid transport ATP-binding protein
942	 24.19	-1	940786..941157	+	123	71083650	-	SAR11_0958	-	transcription regulator
943	 29.45	0	941232..942389	+	385	71083651	-	SAR11_0959	-	hypothetical protein
944	 29.72	0	942739..945366	+	875	71083652	valS	SAR11_0960	-	valine-tRNA ligase
945	 36.53	+1	945366..947084	+	572	71083653	ilvD	SAR11_0961	-	dihydroxy-acid dehydratase
946	 26.68	0	947084..948286	+	400	71083654	manC	SAR11_0962	-	mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase
947	 26.58	0	948344..948565	-	73	71083655	-	SAR11_0963	-	hypothetical protein
948	 26.72	0	948678..949040	+	120	71083656	-	SAR11_0964	-	ferric-uptake regulator
949	 30.83	0	949040..949438	+	132	71083657	-	SAR11_0965	-	hypothetical protein
950	 36.14	+1	949453..950451	+	332	71083658	yiaK	SAR11_0966	-	oxidoreductase YiaK
951	 27.28	0	950443..951219	-	258	71083659	xthA	SAR11_0967	-	exodeoxyribonuclease III
952	 30.19	0	951219..951536	-	105	71083660	-	SAR11_0968	-	HesB-like domain-containing protein
953	 26.97	0	951587..952702	+	371	71083661	dgtP	SAR11_0969	-	dGTPase
954	 27.34	0	952702..954435	+	577	71083662	argS	SAR11_0970	-	arginine-tRNA ligase
955	 18.94	-2	954435..954698	+	87	71083663	-	SAR11_0971	-	hypothetical protein
956	 24.29	-1	954688..955638	+	316	71083664	-	SAR11_0972	-	glycosyl hydrolase
957	 27.40	0	955647..956387	+	246	71083665	scpA	SAR11_0973	-	segregation and condensation protein a
958	 30.06	0	956384..957085	+	233	71083666	scpB	SAR11_0974	-	segregation and condensation protein b
959	 33.33	0	957128..957328	+	66	71083667	tatA	SAR11_0975	-	twin-arginine translocation protein TatA/E
960	 31.98	0	957334..957555	+	73	71083668	tatB	SAR11_0976	-	twin-arginine translocation protein TatB
961	 28.89	0	957542..958306	+	254	71083669	tatC	SAR11_0977	-	sec-independent protein translocase protein tatC
962	 30.08	0	958299..959558	+	419	71083670	serS	SAR11_0978	-	serine-tRNA ligase
963	 29.12	0	959612..959896	+	94	71083671	yajC	SAR11_0979	-	hypothetical protein
964	 29.60	0	959909..961462	+	517	71083672	secD	SAR11_0980	-	protein-export membrane protein SECD
965	 26.80	0	961462..962349	+	295	71083673	secF	SAR11_0981	-	preprotein translocase chain secF
966	 33.50	+1	962352..962945	-	197	71083674	-	SAR11_0982	-	hypothetical protein
967	 32.08	0	962973..965852	-	959	71083675	uvrA	SAR11_0983	-	excinuclease ABC chain A
968	 34.20	+1	965942..966400	+	152	71083676	ssb	SAR11_0984	-	single-strand binding protein (ssb)
969	 31.22	0	966406..968955	+	849	71083677	gyrA	SAR11_0985	-	DNA gyrase subunit A
970	 23.23	-1	968955..969449	+	164	71083678	kdtB	SAR11_0986	-	pantetheine-phosphate adenylyltransferase
971	 33.33	0	969517..969996	+	159	71083679	ppiB	SAR11_0987	-	peptidylprolyl isomerase
972	 30.73	0	970015..971127	+	370	71083680	tgt	SAR11_0988	-	queuine tRNA-ribosyltransferase
973	 16.30	-2	971129..971263	-	44	71083681	-	SAR11_0989	-	hypothetical protein
974	 34.36	+1	971424..972200	-	258	71083682	-	SAR11_0991	-	M48 family peptidase
975	 28.29	0	972375..972989	+	204	71083683	-	SAR11_0992	-	hypothetical protein
976	 26.32	0	972986..975037	-	683	71083684	recG	SAR11_0993	-	ATP-dependent DNA helicase recG
977	 25.47	0	975062..975328	+	88	71083685	-	SAR11_0994	-	hypothetical protein
978	 27.55	0	975511..976392	+	293	71083686	rarD	SAR11_0995	-	rarD protein
979	 26.65	0	976379..977380	+	333	71083687	mltB	SAR11_0996	-	membrane-bound lytic transglycolase-related protein
980	 22.13	-1	977370..978128	+	252	71083688	-	SAR11_0997	-	hypothetical protein
981	 30.82	0	978121..979272	+	383	71083689	dacC	SAR11_0998	-	serine-type D-Ala-D-Ala carboxypeptidase
982	 21.08	-1	979265..979876	+	203	71083690	tmk	SAR11_0999	-	thymidylate kinase (dTMP kinase)
983	 20.90	-2	979881..980813	+	310	71083691	holB	SAR11_1000	-	DNA polymerase III
984	 28.02	0	980814..982355	+	513	71083692	metS	SAR11_1001	-	methionyl-tRNA synthetase
985	 26.01	0	982348..983112	+	254	71083693	-	SAR11_1002	-	TatD related DNase
986	 25.26	0	983112..983891	+	259	71083694	-	SAR11_1003	-	metallo-beta-lactamase family protein
987	 26.51	0	983880..984392	-	170	71083695	bsaA	SAR11_1004	-	glutathione peroxidase
988	 31.07	0	984438..985544	-	368	71083696	nhaA	SAR11_1005	-	Na+/H+ antiporter 1
989	 25.93	0	985615..986127	-	170	71083697	-	SAR11_1006	-	hypothetical protein
990	 25.18	0	986302..986583	+	93	71083698	ndufs4	SAR11_1007	-	ETC complex I subunit region
991	 32.83	0	986586..987578	+	330	71083699	sbmA	SAR11_1008	-	putative transporter
992	 31.54	0	987578..988525	+	315	71083700	glpX	SAR11_1009	-	fructose 1,6-bisphosphatase II
993	 23.66	-1	988522..990216	+	564	71083701	recJ	SAR11_1010	-	single-stranded-DNA-specific exonuclease RecJ
994	 23.02	-1	990347..990598	+	83	71083702	-	SAR11_1011	-	excinuclease ABC subunit C
995	 23.84	-1	990598..992703	+	701	71083703	-	SAR11_1012	-	glycosyl transferase group 1
996	 22.36	-1	992704..993414	+	236	71083704	yxkH	SAR11_1013	-	polysaccharide deacetylase-like protein
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.