version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 863 26.29 0 840723..841148 + 141 71083572 ybgC SAR11_0872 - 4-hydroxybenzoyl-CoA thioesterase family protein 864 24.59 -1 841141..841815 - 224 71083573 ung SAR11_0873 - uracil-DNA glycosylase 865 24.09 -1 841818..842369 + 183 71083574 - SAR11_0874 - phosphoglycerate mutase family protein 866 23.19 -1 842388..842525 + 45 71083575 - SAR11_0875 - hypothetical protein 867 28.25 0 842603..842779 - 58 71083576 - SAR11_0876 - transmembrane protein 868 28.97 0 842772..843023 - 83 71083577 - SAR11_0877 - hypothetical protein 869 27.96 0 843226..844659 + 477 71083578 tig SAR11_0879 - trigger factor 870 31.86 0 844691..845302 + 203 71083579 clpP SAR11_0880 - ATP-dependent Clp protease proteolytic subunit 871 33.33 0 845394..846662 + 422 71083580 clpX SAR11_0881 - ATP-dependent protease ATP-binding subunit 872 30.27 0 846722..849106 + 794 71083581 lon SAR11_0882 - ATP-dependent protease La 873 30.08 0 849410..849778 + 122 71083582 nuoA SAR11_0883 - NADH dehydrogenase I chain A 874 34.67 +1 849790..850311 + 173 71083583 nuoB SAR11_0884 - NADH dehydrogenase subunit B 875 27.59 0 850317..850925 + 202 71083584 nuoC SAR11_0885 - NADH dehydrogenase I chain C 876 33.33 0 850909..852084 + 391 71083585 nuoD SAR11_0886 - NADH dehydrogenase subunit D 877 32.51 0 852084..852692 + 202 71083586 nuoE SAR11_0887 - NADH dehydrogenase I chain E 878 34.53 +1 852685..854016 + 443 71083587 nuoF SAR11_0888 - NADH dehydrogenase I subunit F 879 30.29 0 854009..856048 + 679 71083588 nuoG SAR11_0889 - NADH dehydrogenase subunit G 880 32.53 0 856052..857050 + 332 71083589 nuoH SAR11_0890 - NADH dehydrogenase I chain H 881 30.86 0 857053..857538 + 161 71083590 nuoI SAR11_0891 - NADH dehydrogenase subunit I 882 29.07 0 857541..858173 + 210 71083591 nuoJ SAR11_0892 - NADH dehydrogenase I chain J 883 26.60 0 858166..858477 + 103 71083592 nuoK SAR11_0893 - NADH dehydrogenase I chain K 884 29.41 0 858479..860392 + 637 71083593 nuoL SAR11_0894 - NADH dehydrogenase I chain L 885 31.26 0 860392..861885 + 497 71083594 nuoM SAR11_0896 - NADH dehydrogenase subunit M 886 28.81 0 861885..863300 + 471 71083595 nuoN SAR11_0897 - NADH dehydrogenase subunit N 887 21.28 -1 863300..863863 + 187 71083596 birA SAR11_0898 - biotin-protein ligase 888 24.36 -1 863860..864606 + 248 71083597 yacB SAR11_0899 - Bvg accessory factor 889 32.31 0 864609..866264 + 551 71083598 - SAR11_0900 - metallo-beta-lactamase family protein 890 23.98 -1 866265..866510 + 81 71083599 - SAR11_0901 - hypothetical protein 891 29.06 0 866512..867846 + 444 71083600 proS SAR11_0902 - prolyl-tRNA synthetase 892 26.20 0 867843..869075 + 410 71083601 ycfU SAR11_0903 - ABC transporter 893 25.91 0 869068..869754 + 228 71083602 ycfV SAR11_0905 - ABC transporter ATP-binding protein 894 28.86 0 869738..873154 + 1138 71083603 dnaE SAR11_0906 - DNA polymerase III alpha subunit 895 31.02 0 873284..874105 + 273 71083604 rpsB SAR11_0907 - 30S ribosomal protein S2 896 29.93 0 874107..874958 + 283 71083605 tsf SAR11_0908 - protein translation elongation factor Ts (EF-Ts) 897 28.44 0 874959..875510 + 183 71083606 rrf SAR11_0909 - ribosome recycling factor 898 23.60 -1 875507..876184 + 225 71083607 - SAR11_0910 - putative undecaprenyl diphosphate synthase 899 24.13 -1 876184..876846 + 220 71083608 cdsA SAR11_0911 - phosphatidate cytidylyltransferase 900 21.08 -1 876848..878014 + 388 71083609 yaeM SAR11_0912 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 901 26.68 0 878022..880259 + 745 71083610 omp1 SAR11_0913 - outer membrane protein omp1 902 19.24 -2 880259..880783 + 174 71083611 ompH SAR11_0914 - Outer membrane protein (OmpH-like) 903 33.79 +1 880790..881230 + 146 71083612 fabZ SAR11_0915 - (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase 904 27.62 0 881283..882263 + 326 71083613 lpxD SAR11_0916 - glucosamine N-acyltransferase 905 31.42 0 882260..883042 + 260 71083614 lpxA SAR11_0917 - acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase 906 23.79 -1 883044..883829 + 261 71083615 - SAR11_0918 - hypothetical protein 907 23.31 -1 883826..884962 + 378 71083616 lpxB SAR11_0919 - lipid-A-disaccharide synthase (lpxB) 908 27.62 0 884939..886339 - 466 71083617 gltX SAR11_0920 - glutamyl-tRNA synthetase 909 33.19 0 886362..887039 - 225 71083618 lexA SAR11_0921 - LexA repressor 910 25.38 0 887128..887919 - 263 71083619 trpC SAR11_0922 - indole-3-glycerol phosphate synthase/anthranilate isomerase 911 29.41 0 887912..888904 - 330 71083620 trpD SAR11_0923 - anthranilate phosphoribosyltransferase 912 25.69 0 888901..889476 - 191 71083621 trpGD SAR11_0924 - anthranilate synthase component II 913 27.29 0 889476..890930 - 484 71083622 trpE SAR11_0925 - anthranilate synthase component I-like protein 914 22.71 -1 890930..892351 - 473 71083623 - SAR11_0926 - SurA-like protein 915 25.76 0 892423..893148 + 241 71083624 tpiA SAR11_0927 - triosephosphate isomerase (TIM) 916 33.00 0 893154..893453 + 99 71083625 secG SAR11_0928 - preprotein translocase SecG subunit 917 30.81 0 893557..895455 + 632 71083626 - SAR11_0929 - hypothetical protein 918 32.11 0 895457..895702 - 81 71083627 - SAR11_0930 - transmembrane protein 919 31.58 0 895470..895697 + 75 71084063 - SAR11_0931 - putative transmembrane protein 920 36.16 +1 895754..917707 + 7317 71083628 - SAR11_0932 - hypothetical protein 921 31.23 0 917722..918435 + 237 71083629 acrA SAR11_0933 - AcrA-like protein 922 29.21 0 918432..919766 + 444 71083630 - SAR11_0934 - AcrB-like protein 923 29.10 0 919763..921865 + 700 71083631 - SAR11_0935 - peptidase M50 924 35.43 +1 921991..922563 + 190 71083632 - SAR11_0936 - fimbrial protein pilin 925 29.99 0 922651..924267 + 538 71083633 pyrG SAR11_0937 - CTP synthetase 926 33.82 +1 924264..925088 + 274 71083634 kdsA SAR11_0938 - 2-dehydro-3-deoxyphosphooctonate aldolase 927 28.32 0 925089..926345 + 418 71083635 eno SAR11_0939 - enolase 928 21.78 -1 926345..926647 + 100 71083636 divIC SAR11_0940 - septum formation initiator 929 30.85 0 926637..927563 + 308 71083637 lipA SAR11_0941 - lipoyl synthase 930 24.66 -1 927563..928000 + 145 71083638 - SAR11_0942 - hypothetical protein 931 27.64 0 928018..928509 - 163 71083639 cinA SAR11_0943 - competence/damage-inducible protein CinA 932 25.60 0 928476..928979 - 167 71083640 pgpA SAR11_0944 - phosphatidylglycerophosphatase A 933 24.73 -1 928972..930087 - 371 71083641 ispD SAR11_0945 - IspD/ispF bifunctional enzyme 934 21.55 -1 930121..931902 + 593 71083642 ntrY SAR11_0946 - nitrogen regulation protein ntrY 935 26.11 0 931902..933257 + 451 71083643 ntrX SAR11_0948 - nitrogen assimilation regulatory protein ntrX 936 27.87 0 933258..934649 + 463 71083644 trkA SAR11_0949 - potassium transporter peripheral membrane component 937 19.65 -2 934654..936063 + 469 71083645 - SAR11_0950 - TrkH-like cation transport protein 938 38.52 +2 936342..937382 + 346 71083646 yhdW SAR11_0953 - ABC transporter 939 30.89 0 937448..938593 + 381 71083647 yhdX SAR11_0954 - amino acid ABC transporter 940 29.43 0 938593..939873 + 426 71083648 yhdY SAR11_0955 - putative amino-acid ABC transporter permease protein yhdY 941 31.29 0 939877..940611 + 244 71083649 yhdZ SAR11_0957 - general L-amino acid transport ATP-binding protein 942 24.19 -1 940786..941157 + 123 71083650 - SAR11_0958 - transcription regulator 943 29.45 0 941232..942389 + 385 71083651 - SAR11_0959 - hypothetical protein 944 29.72 0 942739..945366 + 875 71083652 valS SAR11_0960 - valine-tRNA ligase 945 36.53 +1 945366..947084 + 572 71083653 ilvD SAR11_0961 - dihydroxy-acid dehydratase 946 26.68 0 947084..948286 + 400 71083654 manC SAR11_0962 - mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase 947 26.58 0 948344..948565 - 73 71083655 - SAR11_0963 - hypothetical protein 948 26.72 0 948678..949040 + 120 71083656 - SAR11_0964 - ferric-uptake regulator 949 30.83 0 949040..949438 + 132 71083657 - SAR11_0965 - hypothetical protein 950 36.14 +1 949453..950451 + 332 71083658 yiaK SAR11_0966 - oxidoreductase YiaK 951 27.28 0 950443..951219 - 258 71083659 xthA SAR11_0967 - exodeoxyribonuclease III 952 30.19 0 951219..951536 - 105 71083660 - SAR11_0968 - HesB-like domain-containing protein 953 26.97 0 951587..952702 + 371 71083661 dgtP SAR11_0969 - dGTPase 954 27.34 0 952702..954435 + 577 71083662 argS SAR11_0970 - arginine-tRNA ligase 955 18.94 -2 954435..954698 + 87 71083663 - SAR11_0971 - hypothetical protein 956 24.29 -1 954688..955638 + 316 71083664 - SAR11_0972 - glycosyl hydrolase 957 27.40 0 955647..956387 + 246 71083665 scpA SAR11_0973 - segregation and condensation protein a 958 30.06 0 956384..957085 + 233 71083666 scpB SAR11_0974 - segregation and condensation protein b 959 33.33 0 957128..957328 + 66 71083667 tatA SAR11_0975 - twin-arginine translocation protein TatA/E 960 31.98 0 957334..957555 + 73 71083668 tatB SAR11_0976 - twin-arginine translocation protein TatB 961 28.89 0 957542..958306 + 254 71083669 tatC SAR11_0977 - sec-independent protein translocase protein tatC 962 30.08 0 958299..959558 + 419 71083670 serS SAR11_0978 - serine-tRNA ligase 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.