IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
815	 25.74	0	795867..796340	-	157	71083524	-	SAR11_0823	-	putative integral membrane protein
816	 27.39	0	796378..796932	+	184	71083525	recX	SAR11_0824	-	regulatory protein
817	 21.09	-1	796924..797070	-	48	71083526	-	SAR11_0825	-	transmembrane protein
818	 29.18	0	797070..797840	-	256	71083527	cysQ	SAR11_0826	-	cysQ protein
819	 22.71	-1	797837..798043	-	68	71083528	-	SAR11_0827	-	hypothetical protein
820	 29.93	0	798049..799164	+	371	71083529	trmU	SAR11_0828	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
821	 28.99	0	799422..800525	+	367	71083530	metC	SAR11_0829	-	cystathionine beta-lyase
822	 30.71	0	800522..801742	+	406	71083531	-	SAR11_0830	-	major facilitator transporter
823	 23.02	-1	801746..802909	+	387	71083532	pabB	SAR11_0831	-	para-aminobenzoate synthase component I
824	 25.09	-1	802906..803463	+	185	71083533	trpG	SAR11_0832	-	anthranilate synthase component II (glutamine amido-transferase)
825	 21.33	-1	803522..804196	+	224	71083534	-	SAR11_0833	-	aminotransferase
826	 34.25	+1	804165..804599	+	144	71083535	apaG	SAR11_0834	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
827	 33.96	+1	804704..805498	+	264	71083536	aprM	SAR11_0835	-	adenylylsulfate reductase membrane anchor
828	 33.33	0	805519..805989	+	156	71083537	aprB	SAR11_0836	-	adenylyl-sulfate reductase chain B
829	 37.58	+2	805989..807848	+	619	71083538	aprA	SAR11_0837	-	adenylylsulfate reductase
830	 33.62	+1	807867..808217	+	116	71083539	-	SAR11_0838	-	hypothetical protein
831	 25.19	0	808285..808419	+	44	71083540	-	SAR11_0839	-	transmembrane protein
832	 30.01	0	808448..809530	+	360	71083541	-	SAR11_0840	-	putative transmembrane permease
833	 28.21	0	809527..810600	-	357	71083542	yeiH	SAR11_0841	-	putative integral membrane protein
834	 34.96	+1	810619..811785	-	388	71083543	garD	SAR11_0842	-	galactarate dehydratase
835	 31.58	0	811791..812075	-	94	71083544	-	SAR11_0843	-	D-galactarate dehydratase/Altronate
836	 36.53	+1	812187..813971	+	594	71083545	-	SAR11_0844	-	sulfoacetaldehyde acetyltransferase
837	 29.71	0	814011..815612	+	533	71083546	smo	SAR11_0845	-	steroid monooxygenase
838	 30.93	0	815628..816377	+	249	71083547	-	SAR11_0846	-	short chain dehydrogenase
839	 30.88	0	816382..817686	+	434	71083548	-	SAR11_0847	-	glycine/D-amino acid oxidase deaminating
840	 27.20	0	817687..820215	-	842	71083549	-	SAR11_0848	-	ABC transporter
841	 29.43	0	820208..820873	-	221	71083550	-	SAR11_0850	-	ABC transporter ATP-binding protein
842	 29.76	0	820872..821486	+	204	71083551	-	SAR11_0851	-	arylesterase
843	 31.17	0	821501..822793	+	430	71083552	-	SAR11_0852	-	homoserine dehydrogenase
844	 33.85	+1	822790..823941	-	383	71083553	-	SAR11_0853	-	X-Pro dipeptidase
845	 26.38	0	824061..824837	-	258	71083554	-	SAR11_0854	-	fumarylacetoacetate (FAA) hydrolase family protein
846	 29.59	0	824837..825637	-	266	71083555	-	SAR11_0855	-	peptidase
847	 30.43	0	825622..826380	-	252	71083556	-	SAR11_0856	-	short chain dehydrogenase
848	 30.63	0	826381..826971	-	196	71083557	-	SAR11_0857	-	TerC family integral membrane protein
849	 33.27	0	826971..828566	-	531	71083558	betA	SAR11_0858	-	alcohol dehydrogenase (acceptor)
850	 30.79	0	828655..829401	+	248	71083559	fbp	SAR11_0859	-	peptidylprolyl isomerase
851	 24.94	-1	829409..829825	-	138	71083560	-	SAR11_0860	-	transcription regulator
852	 33.46	+1	829950..830726	+	258	71083561	-	SAR11_0861	-	short chain dehydrogenase
853	 34.39	+1	830726..832246	+	506	71083562	-	SAR11_0862	-	aldehyde dehydrogenase
854	 33.44	+1	832239..833165	+	308	71083563	-	SAR11_0863	-	MmsB-like protein
855	 37.27	+1	833343..834434	+	363	71083564	-	SAR11_0864	-	hypothetical protein
856	 31.32	0	834637..835182	+	181	71083565	-	SAR11_0865	-	TRAP-type mannitol/chloroaromatic compound transport system
857	 33.56	+1	835182..836507	+	441	71083566	-	SAR11_0866	-	mannitol transporter
858	 29.47	0	836512..837366	-	284	71083567	yyaM	SAR11_0867	-	transport protein yyaM
859	 26.75	0	837474..838931	+	485	71083568	pucI	SAR11_0868	-	permease for cytosine/purines
860	 33.07	0	838936..839682	+	248	71083569	-	SAR11_0869	-	short chain dehydrogenase
861	 28.43	0	839935..840525	+	196	71083570	-	SAR11_0870	-	hypothetical protein
862	 28.99	0	840528..840665	-	45	71083571	-	SAR11_0871	-	transmembrane protein
863	 26.29	0	840723..841148	+	141	71083572	ybgC	SAR11_0872	-	4-hydroxybenzoyl-CoA thioesterase family protein
864	 24.59	-1	841141..841815	-	224	71083573	ung	SAR11_0873	-	uracil-DNA glycosylase
865	 24.09	-1	841818..842369	+	183	71083574	-	SAR11_0874	-	phosphoglycerate mutase family protein
866	 23.19	-1	842388..842525	+	45	71083575	-	SAR11_0875	-	hypothetical protein
867	 28.25	0	842603..842779	-	58	71083576	-	SAR11_0876	-	transmembrane protein
868	 28.97	0	842772..843023	-	83	71083577	-	SAR11_0877	-	hypothetical protein
869	 27.96	0	843226..844659	+	477	71083578	tig	SAR11_0879	-	trigger factor
870	 31.86	0	844691..845302	+	203	71083579	clpP	SAR11_0880	-	ATP-dependent Clp protease proteolytic subunit
871	 33.33	0	845394..846662	+	422	71083580	clpX	SAR11_0881	-	ATP-dependent protease ATP-binding subunit
872	 30.27	0	846722..849106	+	794	71083581	lon	SAR11_0882	-	ATP-dependent protease La
873	 30.08	0	849410..849778	+	122	71083582	nuoA	SAR11_0883	-	NADH dehydrogenase I chain A
874	 34.67	+1	849790..850311	+	173	71083583	nuoB	SAR11_0884	-	NADH dehydrogenase subunit B
875	 27.59	0	850317..850925	+	202	71083584	nuoC	SAR11_0885	-	NADH dehydrogenase I chain C
876	 33.33	0	850909..852084	+	391	71083585	nuoD	SAR11_0886	-	NADH dehydrogenase subunit D
877	 32.51	0	852084..852692	+	202	71083586	nuoE	SAR11_0887	-	NADH dehydrogenase I chain E
878	 34.53	+1	852685..854016	+	443	71083587	nuoF	SAR11_0888	-	NADH dehydrogenase I subunit F
879	 30.29	0	854009..856048	+	679	71083588	nuoG	SAR11_0889	-	NADH dehydrogenase subunit G
880	 32.53	0	856052..857050	+	332	71083589	nuoH	SAR11_0890	-	NADH dehydrogenase I chain H
881	 30.86	0	857053..857538	+	161	71083590	nuoI	SAR11_0891	-	NADH dehydrogenase subunit I
882	 29.07	0	857541..858173	+	210	71083591	nuoJ	SAR11_0892	-	NADH dehydrogenase I chain J
883	 26.60	0	858166..858477	+	103	71083592	nuoK	SAR11_0893	-	NADH dehydrogenase I chain K
884	 29.41	0	858479..860392	+	637	71083593	nuoL	SAR11_0894	-	NADH dehydrogenase I chain L
885	 31.26	0	860392..861885	+	497	71083594	nuoM	SAR11_0896	-	NADH dehydrogenase subunit M
886	 28.81	0	861885..863300	+	471	71083595	nuoN	SAR11_0897	-	NADH dehydrogenase subunit N
887	 21.28	-1	863300..863863	+	187	71083596	birA	SAR11_0898	-	biotin-protein ligase
888	 24.36	-1	863860..864606	+	248	71083597	yacB	SAR11_0899	-	Bvg accessory factor
889	 32.31	0	864609..866264	+	551	71083598	-	SAR11_0900	-	metallo-beta-lactamase family protein
890	 23.98	-1	866265..866510	+	81	71083599	-	SAR11_0901	-	hypothetical protein
891	 29.06	0	866512..867846	+	444	71083600	proS	SAR11_0902	-	prolyl-tRNA synthetase
892	 26.20	0	867843..869075	+	410	71083601	ycfU	SAR11_0903	-	ABC transporter
893	 25.91	0	869068..869754	+	228	71083602	ycfV	SAR11_0905	-	ABC transporter ATP-binding protein
894	 28.86	0	869738..873154	+	1138	71083603	dnaE	SAR11_0906	-	DNA polymerase III alpha subunit
895	 31.02	0	873284..874105	+	273	71083604	rpsB	SAR11_0907	-	30S ribosomal protein S2
896	 29.93	0	874107..874958	+	283	71083605	tsf	SAR11_0908	-	protein translation elongation factor Ts (EF-Ts)
897	 28.44	0	874959..875510	+	183	71083606	rrf	SAR11_0909	-	ribosome recycling factor
898	 23.60	-1	875507..876184	+	225	71083607	-	SAR11_0910	-	putative undecaprenyl diphosphate synthase
899	 24.13	-1	876184..876846	+	220	71083608	cdsA	SAR11_0911	-	phosphatidate cytidylyltransferase
900	 21.08	-1	876848..878014	+	388	71083609	yaeM	SAR11_0912	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
901	 26.68	0	878022..880259	+	745	71083610	omp1	SAR11_0913	-	outer membrane protein omp1
902	 19.24	-2	880259..880783	+	174	71083611	ompH	SAR11_0914	-	Outer membrane protein (OmpH-like)
903	 33.79	+1	880790..881230	+	146	71083612	fabZ	SAR11_0915	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
904	 27.62	0	881283..882263	+	326	71083613	lpxD	SAR11_0916	-	glucosamine N-acyltransferase
905	 31.42	0	882260..883042	+	260	71083614	lpxA	SAR11_0917	-	acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase
906	 23.79	-1	883044..883829	+	261	71083615	-	SAR11_0918	-	hypothetical protein
907	 23.31	-1	883826..884962	+	378	71083616	lpxB	SAR11_0919	-	lipid-A-disaccharide synthase (lpxB)
908	 27.62	0	884939..886339	-	466	71083617	gltX	SAR11_0920	-	glutamyl-tRNA synthetase
909	 33.19	0	886362..887039	-	225	71083618	lexA	SAR11_0921	-	LexA repressor
910	 25.38	0	887128..887919	-	263	71083619	trpC	SAR11_0922	-	indole-3-glycerol phosphate synthase/anthranilate isomerase
911	 29.41	0	887912..888904	-	330	71083620	trpD	SAR11_0923	-	anthranilate phosphoribosyltransferase
912	 25.69	0	888901..889476	-	191	71083621	trpGD	SAR11_0924	-	anthranilate synthase component II
913	 27.29	0	889476..890930	-	484	71083622	trpE	SAR11_0925	-	anthranilate synthase component I-like protein
914	 22.71	-1	890930..892351	-	473	71083623	-	SAR11_0926	-	SurA-like protein
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.