IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
746	 30.39	0	733559..734305	-	248	71083455	-	SAR11_0752	-	transmembrane protein
747	 34.13	+1	734324..734824	+	166	71083456	moaB	SAR11_0754	-	molybdopterin biosynthesis protein
748	 31.71	0	734825..735070	-	81	71083457	-	SAR11_0755	-	hypothetical protein
749	 35.07	+1	735368..736918	+	516	71083458	aldA	SAR11_0756	-	acetaldehyde dehydrogenase II (ACDH-II)
750	 32.47	0	736964..737311	+	115	71083459	-	SAR11_0757	-	hypothetical protein
751	 26.67	0	737308..737877	-	189	71083460	yedZ	SAR11_0758	-	hypothetical protein
752	 31.46	0	737902..738807	-	301	71083461	yedY	SAR11_0759	-	putative sulfite oxidase subunit YedY
753	 26.80	0	738804..739247	-	147	71083462	moaE	SAR11_0760	-	molybdopterin biosynthesis protein E chain
754	 24.81	-1	739247..739516	-	89	71083463	moaD	SAR11_0761	-	molybdopterin biosynthesis protein moaD
755	 29.30	0	739519..740064	-	181	71083464	moaC	SAR11_0762	-	molybdopterin cofactor synthesis protein
756	 28.80	0	740065..741057	-	330	71083465	moaA	SAR11_0763	-	molybdenum cofactor biosynthesis protein A
757	 31.29	0	741093..741926	+	277	71083466	-	SAR11_0764	-	deoxygenase
758	 37.61	+2	741963..742289	-	108	71083467	-	SAR11_0765	-	hypothetical protein
759	 35.00	+1	742383..743825	+	480	71083468	gabD	SAR11_0766	-	succinate-semialdehyde dehydrogenase (NAD(P))
760	 32.40	0	743871..744617	+	248	71083469	-	SAR11_0767	-	short chain dehydrogenase
761	 33.33	0	744621..745523	+	300	71083470	yajF	SAR11_0768	-	NAGC-like transcription regulator
762	 38.49	+2	745724..746983	+	419	71083471	-	SAR11_0769	-	binding protein component of ABC sugar transporter
763	 32.30	0	747047..747919	+	290	71083472	-	SAR11_0770	-	ABC-type sugar transport system
764	 29.35	0	747909..748811	+	300	71083473	-	SAR11_0771	-	ABC-type sugar transport system
765	 29.16	0	748813..749913	+	366	71083474	malK	SAR11_0772	-	sugar ABC transporter
766	 31.50	0	749914..750675	+	253	71083475	-	SAR11_0773	-	short chain dehydrogenase
767	 34.57	+1	750690..752465	+	591	71083476	edd	SAR11_0774	-	dihydroxy-acid dehydratase
768	 33.06	0	752477..753220	+	247	71083477	ucpA	SAR11_0775	-	oxidoreductase
769	 30.96	0	753242..754084	+	280	71083478	hpcE	SAR11_0776	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy
770	 25.06	-1	754086..754967	+	293	71083479	gnl	SAR11_0777	-	gluconolactonase
771	 32.64	0	755023..755892	+	289	71083480	gnd	SAR11_0778	-	6-phosphogluconate dehydrogenase
772	 30.85	0	755889..756734	+	281	71083481	hpaG	SAR11_0779	-	fumarylacetoacetate hydrolase family protein
773	 28.53	0	756745..759432	+	895	71083482	ppc	SAR11_0780	-	phosphoenolpyruvate carboxylase
774	 26.55	0	759434..760141	+	235	71083483	ccdA	SAR11_0781	-	holocytochrome-c synthase ccdA
775	 29.21	0	760165..760746	+	193	71083484	azoR	SAR11_0782	-	[acyl-carrier-protein] phosphodiesterase
776	 27.51	0	760746..761552	+	268	71083485	-	SAR11_0783	-	inositol monophosphatase family protein
777	 30.12	0	761553..762113	+	186	71083486	-	SAR11_0784	-	hypothetical protein
778	 28.12	0	762333..762677	+	114	71083487	-	SAR11_0785	-	hypothetical protein
779	 32.73	0	763013..763345	-	110	71083488	qacH	SAR11_0786	-	multidrug resistance protein
780	 30.65	0	763345..763680	-	111	71083489	qacH2	SAR11_0787	-	quaternary ammonium compound-resistance protein qacH
781	 35.24	+1	763730..763939	-	69	71083490	-	SAR11_0788	-	transmembrane protein
782	 32.84	0	763955..764959	-	334	71083491	cysK	SAR11_0789	-	cysteine synthase A
783	 34.54	+1	764959..765537	-	192	71083492	cysE	SAR11_0790	-	serine O-acetyltransferase
784	 31.87	0	765612..766022	+	136	71083493	-	SAR11_0791	-	ring-cleaving dioxygenase
785	 24.63	-1	766031..766501	+	156	71083494	-	SAR11_0792	-	hypothetical protein
786	 30.14	0	766600..767475	+	291	71083495	-	SAR11_0793	-	hypothetical protein
787	 40.10	+2	767594..768199	+	201	71083496	-	SAR11_0794	-	hypothetical protein
788	 30.40	0	768206..769159	+	317	71083497	-	SAR11_0795	-	hypothetical protein
789	 33.60	+1	769202..770683	+	493	71083498	aldH	SAR11_0796	-	aldehyde dehydrogenase (NAD)
790	 36.03	+1	770785..771747	+	320	71083499	proX	SAR11_0797	-	hypothetical protein
791	 31.24	0	771830..772879	+	349	71083500	proV	SAR11_0798	-	glycine betaine/L-proline transport ATP-binding protein
792	 32.47	0	772872..774377	+	501	71083501	proW	SAR11_0799	-	glycine betaine/L-proline transport system permease protein
793	 23.60	-1	774387..774992	+	201	71083502	yggA	SAR11_0800	-	lysine efflux pump
794	 35.04	+1	774994..776280	-	428	71083503	hisD	SAR11_0801	-	histidinol dehydrogenase
795	 31.23	0	776343..777149	-	268	71083504	pta	SAR11_0802	-	phosphate acetyltransferase (phosphotransacetylase)
796	 33.95	+1	777304..778446	+	380	71083505	ephX1	SAR11_0803	-	epoxide hydrolase
797	 31.06	0	778447..779457	-	336	71083506	comC	SAR11_0804	-	malate/L-sulfolactate dehydrogenase multifunction enzyme
798	 31.66	0	779476..781389	-	637	71083507	tauC	SAR11_0805	-	taurine uptake ABC transporter permease protein
799	 33.96	+1	781391..782188	-	265	71083508	tauB	SAR11_0806	-	taurin uptake ABC transporter ATP-binding protein
800	 35.56	+1	782276..783217	-	313	71083509	tauA	SAR11_0807	-	taurine transport system periplasmic protein
801	 35.19	+1	783435..784781	+	448	71083510	bioA	SAR11_0808	-	beta alanine--pyruvate transaminase
802	 36.21	+1	784825..785937	+	370	71083511	ald	SAR11_0809	-	alanine dehydrogenase
803	 28.68	0	785951..786466	+	171	71083512	-	SAR11_0810	-	hypothetical protein
804	 29.12	0	786575..788023	+	482	71083513	-	SAR11_0811	-	sodium/solute transporter family
805	 30.24	0	788073..789008	+	311	71083514	yadG	SAR11_0812	-	ATP-binding component of ABC transporter
806	 30.86	0	788998..789765	+	255	71083515	yadH	SAR11_0813	-	permease
807	 28.12	0	789794..790177	-	127	71083516	cynT	SAR11_0815	-	carbonic anhydrase
808	 31.75	0	790317..791450	+	377	71083517	-	SAR11_0816	-	membrane-associated zinc metalloprotease
809	 32.97	0	791591..791866	+	91	71083518	hupA	SAR11_0817	-	non-specific DNA-binding protein HBsu
810	 35.79	+1	792013..793314	+	433	71083519	amtB	SAR11_0818	-	ammonium transporter
811	 25.85	0	793367..793834	-	155	71083520	bcp	SAR11_0819	-	bacterioferritin comigratory protein
812	 22.35	-1	793837..794856	-	339	71083521	wbbA	SAR11_0820	-	putative rhamnosyltransferase
813	 33.33	0	794910..795293	+	127	71083522	-	SAR11_0821	-	sulfide dehydrogenase
814	 26.67	0	795290..795874	-	194	71083523	dsbA	SAR11_0822	-	2-hydroxychromene-2-carboxylate isomerase family protein
815	 25.74	0	795867..796340	-	157	71083524	-	SAR11_0823	-	putative integral membrane protein
816	 27.39	0	796378..796932	+	184	71083525	recX	SAR11_0824	-	regulatory protein
817	 21.09	-1	796924..797070	-	48	71083526	-	SAR11_0825	-	transmembrane protein
818	 29.18	0	797070..797840	-	256	71083527	cysQ	SAR11_0826	-	cysQ protein
819	 22.71	-1	797837..798043	-	68	71083528	-	SAR11_0827	-	hypothetical protein
820	 29.93	0	798049..799164	+	371	71083529	trmU	SAR11_0828	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
821	 28.99	0	799422..800525	+	367	71083530	metC	SAR11_0829	-	cystathionine beta-lyase
822	 30.71	0	800522..801742	+	406	71083531	-	SAR11_0830	-	major facilitator transporter
823	 23.02	-1	801746..802909	+	387	71083532	pabB	SAR11_0831	-	para-aminobenzoate synthase component I
824	 25.09	-1	802906..803463	+	185	71083533	trpG	SAR11_0832	-	anthranilate synthase component II (glutamine amido-transferase)
825	 21.33	-1	803522..804196	+	224	71083534	-	SAR11_0833	-	aminotransferase
826	 34.25	+1	804165..804599	+	144	71083535	apaG	SAR11_0834	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
827	 33.96	+1	804704..805498	+	264	71083536	aprM	SAR11_0835	-	adenylylsulfate reductase membrane anchor
828	 33.33	0	805519..805989	+	156	71083537	aprB	SAR11_0836	-	adenylyl-sulfate reductase chain B
829	 37.58	+2	805989..807848	+	619	71083538	aprA	SAR11_0837	-	adenylylsulfate reductase
830	 33.62	+1	807867..808217	+	116	71083539	-	SAR11_0838	-	hypothetical protein
831	 25.19	0	808285..808419	+	44	71083540	-	SAR11_0839	-	transmembrane protein
832	 30.01	0	808448..809530	+	360	71083541	-	SAR11_0840	-	putative transmembrane permease
833	 28.21	0	809527..810600	-	357	71083542	yeiH	SAR11_0841	-	putative integral membrane protein
834	 34.96	+1	810619..811785	-	388	71083543	garD	SAR11_0842	-	galactarate dehydratase
835	 31.58	0	811791..812075	-	94	71083544	-	SAR11_0843	-	D-galactarate dehydratase/Altronate
836	 36.53	+1	812187..813971	+	594	71083545	-	SAR11_0844	-	sulfoacetaldehyde acetyltransferase
837	 29.71	0	814011..815612	+	533	71083546	smo	SAR11_0845	-	steroid monooxygenase
838	 30.93	0	815628..816377	+	249	71083547	-	SAR11_0846	-	short chain dehydrogenase
839	 30.88	0	816382..817686	+	434	71083548	-	SAR11_0847	-	glycine/D-amino acid oxidase deaminating
840	 27.20	0	817687..820215	-	842	71083549	-	SAR11_0848	-	ABC transporter
841	 29.43	0	820208..820873	-	221	71083550	-	SAR11_0850	-	ABC transporter ATP-binding protein
842	 29.76	0	820872..821486	+	204	71083551	-	SAR11_0851	-	arylesterase
843	 31.17	0	821501..822793	+	430	71083552	-	SAR11_0852	-	homoserine dehydrogenase
844	 33.85	+1	822790..823941	-	383	71083553	-	SAR11_0853	-	X-Pro dipeptidase
845	 26.38	0	824061..824837	-	258	71083554	-	SAR11_0854	-	fumarylacetoacetate (FAA) hydrolase family protein
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.