IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
694	 26.19	0	684353..684898	-	181	71083403	cvpA	SAR11_0700	-	colicin V production protein
695	 27.34	0	684906..687290	-	794	71083404	acrB	SAR11_0701	-	integral membrane protein
696	 32.84	0	687312..688730	-	472	71083405	dnaB	SAR11_0702	-	replicative DNA helicase (dnaB)
697	 24.84	-1	688798..689256	-	152	71083406	csn1	SAR11_0703	-	50S ribosomal protein L9P
698	 28.67	0	689257..689535	-	92	71083407	rpsR	SAR11_0704	-	ribosomal protein S18
699	 25.14	-1	689538..689903	-	121	71083408	rpsF	SAR11_0705	-	ribosomal protein S6
700	 30.01	0	689990..690922	+	310	71083409	fabD	SAR11_0706	-	[acyl-carrier-protein] S-malonyltransferase
701	 28.59	0	690915..691652	+	245	71083410	fabG	SAR11_0707	-	3-oxoacyl-[acyl-carrier-protein] reductase
702	 33.75	+1	691701..691940	+	79	71083411	acpP	SAR11_0708	-	Acyl carrier protein (ACP)
703	 26.22	0	691948..692580	+	210	71083412	gmk	SAR11_0709	-	guanylate kinase
704	 28.39	0	692569..693357	-	262	71083413	ksgA	SAR11_0710	-	dimethyladenosine transferase
705	 23.99	-1	693358..694320	-	320	71083414	pdxA	SAR11_0711	-	4-hydroxythreonine-4-phosphate dehydrogenase
706	 20.26	-2	694313..695230	-	305	71083415	-	SAR11_0712	-	SurA-like protein
707	 26.71	0	695237..697681	-	814	71083416	ostA	SAR11_0713	-	organic solvent tolerance-like protein
708	 21.23	-1	697671..698744	-	357	71083417	-	SAR11_0714	-	permease YjgP/YjgQ family protein
709	 20.40	-2	698741..699877	-	378	71083418	-	SAR11_0715	-	permease YjgP/YjgQ family protein
710	 27.98	0	699939..701396	+	485	71083419	pepA	SAR11_0716	-	leucyl aminopeptidase
711	 27.01	0	701389..701799	+	136	71083420	ndk	SAR11_0717	-	nucleoside diphosphate kinase
712	 23.14	-1	701796..702374	-	192	71083421	purN	SAR11_0718	-	phosphoribosylglycinamide formyltransferase
713	 27.31	0	702352..703380	-	342	71083422	purM	SAR11_0719	-	phosphoribosylformylglycinamidine cyclo-ligase
714	 20.65	-2	703605..704471	+	288	71083423	-	SAR11_0720	-	hypothetical protein
715	 22.47	-1	704468..705130	+	220	71083424	-	SAR11_0721	-	ATPase involved in DNA replication initiation
716	 30.70	0	705131..706915	+	594	71083425	aspS	SAR11_0722	-	aspartyl-tRNA synthetase
717	 29.56	0	706918..707739	-	273	71083426	nrdE	SAR11_0723	-	ribonucleotide reductase alpha subunit
718	 29.44	0	707855..708214	+	119	71083427	-	SAR11_0724	-	NADH-ubiquinone oxidoreductase 17.2 kD subunit of complex I
719	 26.72	0	708174..708581	+	135	71083428	-	SAR11_0725	-	hypothetical protein
720	 33.18	0	708578..709915	-	445	71083429	-	SAR11_0726	-	biotin carboxylase
721	 32.86	0	709915..710340	-	141	71083430	accB	SAR11_0727	-	acetyl-CoA carboxylase biotin carboxyl carrier protein
722	 26.44	0	710327..710776	-	149	71083431	aroQ	SAR11_0728	-	3-dehydroquinate dehydratase
723	 15.98	-2	710793..711011	+	72	71083432	-	SAR11_0729	-	ThiS family protein
724	 33.20	0	711014..711787	+	257	71083433	thiG	SAR11_0730	-	thiazole synthase
725	 29.03	0	711784..713643	-	619	71083434	rne	SAR11_0731	-	ribonuclease E/G
726	 28.92	0	713746..716079	+	777	71083435	mrcA	SAR11_0732	-	penicillin-binding protein 1A
727	 31.81	0	716320..717174	+	284	71083436	prfB	SAR11_0733	-	peptide chain release factor 2
728	 23.30	-1	717174..719366	+	730	71083437	-	SAR11_0734	-	hypothetical protein
729	 27.15	0	719363..720592	-	409	71083438	tyrS	SAR11_0735	-	tyrosyl-tRNA synthetase
730	 28.10	0	720637..721764	+	375	71083439	anmK	SAR11_0736	-	anhydro-N-acetylmuramic acid kinase
731	 32.12	0	721767..722423	-	218	71083440	-	SAR11_0737	-	alpha/beta hydrolase
732	 28.40	0	722560..722985	+	141	71083441	sufA	SAR11_0738	-	transcriptional regulator
733	 30.84	0	722987..724429	+	480	71083442	sufB	SAR11_0739	-	cysteine desulfurase activator complex subunit SufB
734	 28.03	0	724429..725163	+	244	71083443	sufC	SAR11_0740	-	FeS assembly ATPase SufC
735	 24.34	-1	725164..726408	+	414	71083444	sufD	SAR11_0741	-	FeS assembly protein sufD
736	 30.54	0	726405..727622	+	405	71083445	csdB	SAR11_0742	-	selenocysteine lyase chain A
737	 27.39	0	727622..728092	+	156	71083446	sufE	SAR11_0743	-	putative nifU-like protein
738	 32.32	0	728096..728392	+	98	71083447	paaD	SAR11_0744	-	phenylacetic acid degradation protein
739	 33.33	0	728392..728724	+	110	71083448	hesB	SAR11_0745	-	hesB protein
740	 29.24	0	728783..728953	+	56	71083449	-	SAR11_0746	-	hypothetical protein
741	 33.48	+1	728960..730366	-	468	71083450	glnA	SAR11_0747	-	glutamine synthetase I
742	 31.67	0	730513..730992	+	159	71083451	-	SAR11_0748	-	YbaK/prolyl-tRNA synthetase associated region
743	 25.56	0	730989..731876	+	295	71083452	-	SAR11_0749	-	ABC transporter
744	 30.03	0	731869..732777	-	302	71083453	mmuM	SAR11_0750	-	homocysteine S-methyltransferase
745	 24.70	-1	732939..733529	-	196	71083454	-	SAR11_0751	-	hypothetical protein
746	 30.39	0	733559..734305	-	248	71083455	-	SAR11_0752	-	transmembrane protein
747	 34.13	+1	734324..734824	+	166	71083456	moaB	SAR11_0754	-	molybdopterin biosynthesis protein
748	 31.71	0	734825..735070	-	81	71083457	-	SAR11_0755	-	hypothetical protein
749	 35.07	+1	735368..736918	+	516	71083458	aldA	SAR11_0756	-	acetaldehyde dehydrogenase II (ACDH-II)
750	 32.47	0	736964..737311	+	115	71083459	-	SAR11_0757	-	hypothetical protein
751	 26.67	0	737308..737877	-	189	71083460	yedZ	SAR11_0758	-	hypothetical protein
752	 31.46	0	737902..738807	-	301	71083461	yedY	SAR11_0759	-	putative sulfite oxidase subunit YedY
753	 26.80	0	738804..739247	-	147	71083462	moaE	SAR11_0760	-	molybdopterin biosynthesis protein E chain
754	 24.81	-1	739247..739516	-	89	71083463	moaD	SAR11_0761	-	molybdopterin biosynthesis protein moaD
755	 29.30	0	739519..740064	-	181	71083464	moaC	SAR11_0762	-	molybdopterin cofactor synthesis protein
756	 28.80	0	740065..741057	-	330	71083465	moaA	SAR11_0763	-	molybdenum cofactor biosynthesis protein A
757	 31.29	0	741093..741926	+	277	71083466	-	SAR11_0764	-	deoxygenase
758	 37.61	+2	741963..742289	-	108	71083467	-	SAR11_0765	-	hypothetical protein
759	 35.00	+1	742383..743825	+	480	71083468	gabD	SAR11_0766	-	succinate-semialdehyde dehydrogenase (NAD(P))
760	 32.40	0	743871..744617	+	248	71083469	-	SAR11_0767	-	short chain dehydrogenase
761	 33.33	0	744621..745523	+	300	71083470	yajF	SAR11_0768	-	NAGC-like transcription regulator
762	 38.49	+2	745724..746983	+	419	71083471	-	SAR11_0769	-	binding protein component of ABC sugar transporter
763	 32.30	0	747047..747919	+	290	71083472	-	SAR11_0770	-	ABC-type sugar transport system
764	 29.35	0	747909..748811	+	300	71083473	-	SAR11_0771	-	ABC-type sugar transport system
765	 29.16	0	748813..749913	+	366	71083474	malK	SAR11_0772	-	sugar ABC transporter
766	 31.50	0	749914..750675	+	253	71083475	-	SAR11_0773	-	short chain dehydrogenase
767	 34.57	+1	750690..752465	+	591	71083476	edd	SAR11_0774	-	dihydroxy-acid dehydratase
768	 33.06	0	752477..753220	+	247	71083477	ucpA	SAR11_0775	-	oxidoreductase
769	 30.96	0	753242..754084	+	280	71083478	hpcE	SAR11_0776	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy
770	 25.06	-1	754086..754967	+	293	71083479	gnl	SAR11_0777	-	gluconolactonase
771	 32.64	0	755023..755892	+	289	71083480	gnd	SAR11_0778	-	6-phosphogluconate dehydrogenase
772	 30.85	0	755889..756734	+	281	71083481	hpaG	SAR11_0779	-	fumarylacetoacetate hydrolase family protein
773	 28.53	0	756745..759432	+	895	71083482	ppc	SAR11_0780	-	phosphoenolpyruvate carboxylase
774	 26.55	0	759434..760141	+	235	71083483	ccdA	SAR11_0781	-	holocytochrome-c synthase ccdA
775	 29.21	0	760165..760746	+	193	71083484	azoR	SAR11_0782	-	[acyl-carrier-protein] phosphodiesterase
776	 27.51	0	760746..761552	+	268	71083485	-	SAR11_0783	-	inositol monophosphatase family protein
777	 30.12	0	761553..762113	+	186	71083486	-	SAR11_0784	-	hypothetical protein
778	 28.12	0	762333..762677	+	114	71083487	-	SAR11_0785	-	hypothetical protein
779	 32.73	0	763013..763345	-	110	71083488	qacH	SAR11_0786	-	multidrug resistance protein
780	 30.65	0	763345..763680	-	111	71083489	qacH2	SAR11_0787	-	quaternary ammonium compound-resistance protein qacH
781	 35.24	+1	763730..763939	-	69	71083490	-	SAR11_0788	-	transmembrane protein
782	 32.84	0	763955..764959	-	334	71083491	cysK	SAR11_0789	-	cysteine synthase A
783	 34.54	+1	764959..765537	-	192	71083492	cysE	SAR11_0790	-	serine O-acetyltransferase
784	 31.87	0	765612..766022	+	136	71083493	-	SAR11_0791	-	ring-cleaving dioxygenase
785	 24.63	-1	766031..766501	+	156	71083494	-	SAR11_0792	-	hypothetical protein
786	 30.14	0	766600..767475	+	291	71083495	-	SAR11_0793	-	hypothetical protein
787	 40.10	+2	767594..768199	+	201	71083496	-	SAR11_0794	-	hypothetical protein
788	 30.40	0	768206..769159	+	317	71083497	-	SAR11_0795	-	hypothetical protein
789	 33.60	+1	769202..770683	+	493	71083498	aldH	SAR11_0796	-	aldehyde dehydrogenase (NAD)
790	 36.03	+1	770785..771747	+	320	71083499	proX	SAR11_0797	-	hypothetical protein
791	 31.24	0	771830..772879	+	349	71083500	proV	SAR11_0798	-	glycine betaine/L-proline transport ATP-binding protein
792	 32.47	0	772872..774377	+	501	71083501	proW	SAR11_0799	-	glycine betaine/L-proline transport system permease protein
793	 23.60	-1	774387..774992	+	201	71083502	yggA	SAR11_0800	-	lysine efflux pump
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.