version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 670 33.51 +1 659309..660412 + 367 71083379 - SAR11_0676 - hypothetical protein 671 25.70 0 660441..660977 + 178 71083380 - SAR11_0677 - hypothetical protein 672 30.85 0 660987..662438 - 483 71083381 - SAR11_0678 - hypothetical protein 673 33.51 +1 662447..665215 - 922 71083382 fdhF SAR11_0679 - formate dehydrogenase Alpha subunit (fdhF-2) 674 32.22 0 665215..666744 - 509 71083383 fdsB SAR11_0680 - NAD-dependent formate dehydrogenase beta subunit 675 28.23 0 666877..667719 - 280 71083384 fdhD SAR11_0681 - formate dehydrogenase chain D 676 30.40 0 667724..668200 - 158 71083385 - SAR11_0682 - HPP family protein 677 28.07 0 668203..668601 - 132 71083386 - SAR11_0683 - NifU-like domain-containing protein 678 27.21 0 668645..669265 + 206 71083387 mobA SAR11_0684 - hypothetical protein 679 26.04 0 669258..670505 + 415 71083388 moeA SAR11_0685 - molybdopterin biosynthesis protein moeA 680 31.15 0 670773..671459 + 228 71083389 - SAR11_0686 - hypothetical protein 681 32.51 0 671465..672682 + 405 71083390 pepQ SAR11_0687 - creatinase 682 34.59 +1 672686..673798 + 370 71083391 gatM SAR11_0688 - glycine amidinotransferase 683 34.00 +1 673801..674853 + 350 71083392 - SAR11_0689 - threonine aldolase 684 34.36 +1 674846..675040 - 64 71083393 - SAR11_0690 - hypothetical protein 685 31.62 0 675167..676099 - 310 71083394 - SAR11_0691 - hypothetical protein 686 32.51 0 676379..676864 - 161 71083395 yajQ SAR11_0692 - nucleotide-binding protein 687 25.72 0 676886..677161 + 91 71083396 slyX SAR11_0693 - SlyX 688 31.30 0 677178..678359 + 393 71083397 - SAR11_0694 - hypothetical protein 689 31.82 0 678384..679706 - 440 71083398 ycaD SAR11_0695 - transporter 690 32.64 0 679765..680625 - 286 71083399 salY SAR11_0696 - hypothetical protein 691 24.62 -1 680622..681551 - 309 71083400 gshB SAR11_0697 - glutathione synthase 692 28.63 0 681541..682836 - 431 71083401 gsh1 SAR11_0698 - glutamate-cysteine ligase family 2 protein 693 31.71 0 682918..684399 - 493 71083402 purF SAR11_0699 - amidophosphoribosyltransferase 694 26.19 0 684353..684898 - 181 71083403 cvpA SAR11_0700 - colicin V production protein 695 27.34 0 684906..687290 - 794 71083404 acrB SAR11_0701 - integral membrane protein 696 32.84 0 687312..688730 - 472 71083405 dnaB SAR11_0702 - replicative DNA helicase (dnaB) 697 24.84 -1 688798..689256 - 152 71083406 csn1 SAR11_0703 - 50S ribosomal protein L9P 698 28.67 0 689257..689535 - 92 71083407 rpsR SAR11_0704 - ribosomal protein S18 699 25.14 -1 689538..689903 - 121 71083408 rpsF SAR11_0705 - ribosomal protein S6 700 30.01 0 689990..690922 + 310 71083409 fabD SAR11_0706 - [acyl-carrier-protein] S-malonyltransferase 701 28.59 0 690915..691652 + 245 71083410 fabG SAR11_0707 - 3-oxoacyl-[acyl-carrier-protein] reductase 702 33.75 +1 691701..691940 + 79 71083411 acpP SAR11_0708 - Acyl carrier protein (ACP) 703 26.22 0 691948..692580 + 210 71083412 gmk SAR11_0709 - guanylate kinase 704 28.39 0 692569..693357 - 262 71083413 ksgA SAR11_0710 - dimethyladenosine transferase 705 23.99 -1 693358..694320 - 320 71083414 pdxA SAR11_0711 - 4-hydroxythreonine-4-phosphate dehydrogenase 706 20.26 -2 694313..695230 - 305 71083415 - SAR11_0712 - SurA-like protein 707 26.71 0 695237..697681 - 814 71083416 ostA SAR11_0713 - organic solvent tolerance-like protein 708 21.23 -1 697671..698744 - 357 71083417 - SAR11_0714 - permease YjgP/YjgQ family protein 709 20.40 -2 698741..699877 - 378 71083418 - SAR11_0715 - permease YjgP/YjgQ family protein 710 27.98 0 699939..701396 + 485 71083419 pepA SAR11_0716 - leucyl aminopeptidase 711 27.01 0 701389..701799 + 136 71083420 ndk SAR11_0717 - nucleoside diphosphate kinase 712 23.14 -1 701796..702374 - 192 71083421 purN SAR11_0718 - phosphoribosylglycinamide formyltransferase 713 27.31 0 702352..703380 - 342 71083422 purM SAR11_0719 - phosphoribosylformylglycinamidine cyclo-ligase 714 20.65 -2 703605..704471 + 288 71083423 - SAR11_0720 - hypothetical protein 715 22.47 -1 704468..705130 + 220 71083424 - SAR11_0721 - ATPase involved in DNA replication initiation 716 30.70 0 705131..706915 + 594 71083425 aspS SAR11_0722 - aspartyl-tRNA synthetase 717 29.56 0 706918..707739 - 273 71083426 nrdE SAR11_0723 - ribonucleotide reductase alpha subunit 718 29.44 0 707855..708214 + 119 71083427 - SAR11_0724 - NADH-ubiquinone oxidoreductase 17.2 kD subunit of complex I 719 26.72 0 708174..708581 + 135 71083428 - SAR11_0725 - hypothetical protein 720 33.18 0 708578..709915 - 445 71083429 - SAR11_0726 - biotin carboxylase 721 32.86 0 709915..710340 - 141 71083430 accB SAR11_0727 - acetyl-CoA carboxylase biotin carboxyl carrier protein 722 26.44 0 710327..710776 - 149 71083431 aroQ SAR11_0728 - 3-dehydroquinate dehydratase 723 15.98 -2 710793..711011 + 72 71083432 - SAR11_0729 - ThiS family protein 724 33.20 0 711014..711787 + 257 71083433 thiG SAR11_0730 - thiazole synthase 725 29.03 0 711784..713643 - 619 71083434 rne SAR11_0731 - ribonuclease E/G 726 28.92 0 713746..716079 + 777 71083435 mrcA SAR11_0732 - penicillin-binding protein 1A 727 31.81 0 716320..717174 + 284 71083436 prfB SAR11_0733 - peptide chain release factor 2 728 23.30 -1 717174..719366 + 730 71083437 - SAR11_0734 - hypothetical protein 729 27.15 0 719363..720592 - 409 71083438 tyrS SAR11_0735 - tyrosyl-tRNA synthetase 730 28.10 0 720637..721764 + 375 71083439 anmK SAR11_0736 - anhydro-N-acetylmuramic acid kinase 731 32.12 0 721767..722423 - 218 71083440 - SAR11_0737 - alpha/beta hydrolase 732 28.40 0 722560..722985 + 141 71083441 sufA SAR11_0738 - transcriptional regulator 733 30.84 0 722987..724429 + 480 71083442 sufB SAR11_0739 - cysteine desulfurase activator complex subunit SufB 734 28.03 0 724429..725163 + 244 71083443 sufC SAR11_0740 - FeS assembly ATPase SufC 735 24.34 -1 725164..726408 + 414 71083444 sufD SAR11_0741 - FeS assembly protein sufD 736 30.54 0 726405..727622 + 405 71083445 csdB SAR11_0742 - selenocysteine lyase chain A 737 27.39 0 727622..728092 + 156 71083446 sufE SAR11_0743 - putative nifU-like protein 738 32.32 0 728096..728392 + 98 71083447 paaD SAR11_0744 - phenylacetic acid degradation protein 739 33.33 0 728392..728724 + 110 71083448 hesB SAR11_0745 - hesB protein 740 29.24 0 728783..728953 + 56 71083449 - SAR11_0746 - hypothetical protein 741 33.48 +1 728960..730366 - 468 71083450 glnA SAR11_0747 - glutamine synthetase I 742 31.67 0 730513..730992 + 159 71083451 - SAR11_0748 - YbaK/prolyl-tRNA synthetase associated region 743 25.56 0 730989..731876 + 295 71083452 - SAR11_0749 - ABC transporter 744 30.03 0 731869..732777 - 302 71083453 mmuM SAR11_0750 - homocysteine S-methyltransferase 745 24.70 -1 732939..733529 - 196 71083454 - SAR11_0751 - hypothetical protein 746 30.39 0 733559..734305 - 248 71083455 - SAR11_0752 - transmembrane protein 747 34.13 +1 734324..734824 + 166 71083456 moaB SAR11_0754 - molybdopterin biosynthesis protein 748 31.71 0 734825..735070 - 81 71083457 - SAR11_0755 - hypothetical protein 749 35.07 +1 735368..736918 + 516 71083458 aldA SAR11_0756 - acetaldehyde dehydrogenase II (ACDH-II) 750 32.47 0 736964..737311 + 115 71083459 - SAR11_0757 - hypothetical protein 751 26.67 0 737308..737877 - 189 71083460 yedZ SAR11_0758 - hypothetical protein 752 31.46 0 737902..738807 - 301 71083461 yedY SAR11_0759 - putative sulfite oxidase subunit YedY 753 26.80 0 738804..739247 - 147 71083462 moaE SAR11_0760 - molybdopterin biosynthesis protein E chain 754 24.81 -1 739247..739516 - 89 71083463 moaD SAR11_0761 - molybdopterin biosynthesis protein moaD 755 29.30 0 739519..740064 - 181 71083464 moaC SAR11_0762 - molybdopterin cofactor synthesis protein 756 28.80 0 740065..741057 - 330 71083465 moaA SAR11_0763 - molybdenum cofactor biosynthesis protein A 757 31.29 0 741093..741926 + 277 71083466 - SAR11_0764 - deoxygenase 758 37.61 +2 741963..742289 - 108 71083467 - SAR11_0765 - hypothetical protein 759 35.00 +1 742383..743825 + 480 71083468 gabD SAR11_0766 - succinate-semialdehyde dehydrogenase (NAD(P)) 760 32.40 0 743871..744617 + 248 71083469 - SAR11_0767 - short chain dehydrogenase 761 33.33 0 744621..745523 + 300 71083470 yajF SAR11_0768 - NAGC-like transcription regulator 762 38.49 +2 745724..746983 + 419 71083471 - SAR11_0769 - binding protein component of ABC sugar transporter 763 32.30 0 747047..747919 + 290 71083472 - SAR11_0770 - ABC-type sugar transport system 764 29.35 0 747909..748811 + 300 71083473 - SAR11_0771 - ABC-type sugar transport system 765 29.16 0 748813..749913 + 366 71083474 malK SAR11_0772 - sugar ABC transporter 766 31.50 0 749914..750675 + 253 71083475 - SAR11_0773 - short chain dehydrogenase 767 34.57 +1 750690..752465 + 591 71083476 edd SAR11_0774 - dihydroxy-acid dehydratase 768 33.06 0 752477..753220 + 247 71083477 ucpA SAR11_0775 - oxidoreductase 769 30.96 0 753242..754084 + 280 71083478 hpcE SAR11_0776 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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