IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
654	 30.79	0	644468..645175	+	235	71083363	braG	SAR11_0659	-	high-affinity branched-chain amino acid transport ATP-binding protein
655	 33.08	0	645176..645961	-	261	71083364	-	SAR11_0660	-	hypothetical protein
656	 28.05	0	645966..646457	-	163	71083365	-	SAR11_0661	-	hypothetical protein
657	 30.58	0	646461..647258	-	265	71083366	ybgL	SAR11_0662	-	hypothetical protein
658	 26.93	0	647262..647948	+	228	71083367	kipI	SAR11_0663	-	allophanate hydrolase subunit 1
659	 27.46	0	647941..648894	+	317	71083368	ybgK	SAR11_0664	-	allophanate hydrolase subunit 2
660	 30.95	0	648881..649762	+	293	71083369	-	SAR11_0665	-	integral membrane protein
661	 32.34	0	649954..651060	+	368	71083370	gcvT	SAR11_0666	-	glycine cleavage system protein T2
662	 33.33	0	651057..651437	+	126	71083371	gcvH	SAR11_0667	-	glycine cleavage H-protein
663	 33.23	0	651438..654296	+	952	71083372	gcvP	SAR11_0668	-	glycine dehydrogenase
664	 26.43	0	654309..655553	+	414	71083373	-	SAR11_0669	-	flavin containing amine oxidoreductas
665	 23.96	-1	655546..656313	+	255	71083374	-	SAR11_0670	-	hypothetical protein
666	 24.68	-1	656313..657491	+	392	71083375	-	SAR11_0672	-	cyclopropane-fatty-acyl-phospholipid synthase
667	 30.78	0	657505..658053	+	182	71083376	-	SAR11_0673	-	hypothetical protein
668	 31.23	0	658050..658811	-	253	71083377	-	SAR11_0674	-	short chain dehydrogenase
669	 25.21	0	658833..659300	+	155	71083378	tspo	SAR11_0675	-	TspO/MBR family protein
670	 33.51	+1	659309..660412	+	367	71083379	-	SAR11_0676	-	hypothetical protein
671	 25.70	0	660441..660977	+	178	71083380	-	SAR11_0677	-	hypothetical protein
672	 30.85	0	660987..662438	-	483	71083381	-	SAR11_0678	-	hypothetical protein
673	 33.51	+1	662447..665215	-	922	71083382	fdhF	SAR11_0679	-	formate dehydrogenase Alpha subunit (fdhF-2)
674	 32.22	0	665215..666744	-	509	71083383	fdsB	SAR11_0680	-	NAD-dependent formate dehydrogenase beta subunit
675	 28.23	0	666877..667719	-	280	71083384	fdhD	SAR11_0681	-	formate dehydrogenase chain D
676	 30.40	0	667724..668200	-	158	71083385	-	SAR11_0682	-	HPP family protein
677	 28.07	0	668203..668601	-	132	71083386	-	SAR11_0683	-	NifU-like domain-containing protein
678	 27.21	0	668645..669265	+	206	71083387	mobA	SAR11_0684	-	hypothetical protein
679	 26.04	0	669258..670505	+	415	71083388	moeA	SAR11_0685	-	molybdopterin biosynthesis protein moeA
680	 31.15	0	670773..671459	+	228	71083389	-	SAR11_0686	-	hypothetical protein
681	 32.51	0	671465..672682	+	405	71083390	pepQ	SAR11_0687	-	creatinase
682	 34.59	+1	672686..673798	+	370	71083391	gatM	SAR11_0688	-	glycine amidinotransferase
683	 34.00	+1	673801..674853	+	350	71083392	-	SAR11_0689	-	threonine aldolase
684	 34.36	+1	674846..675040	-	64	71083393	-	SAR11_0690	-	hypothetical protein
685	 31.62	0	675167..676099	-	310	71083394	-	SAR11_0691	-	hypothetical protein
686	 32.51	0	676379..676864	-	161	71083395	yajQ	SAR11_0692	-	nucleotide-binding protein
687	 25.72	0	676886..677161	+	91	71083396	slyX	SAR11_0693	-	SlyX
688	 31.30	0	677178..678359	+	393	71083397	-	SAR11_0694	-	hypothetical protein
689	 31.82	0	678384..679706	-	440	71083398	ycaD	SAR11_0695	-	transporter
690	 32.64	0	679765..680625	-	286	71083399	salY	SAR11_0696	-	hypothetical protein
691	 24.62	-1	680622..681551	-	309	71083400	gshB	SAR11_0697	-	glutathione synthase
692	 28.63	0	681541..682836	-	431	71083401	gsh1	SAR11_0698	-	glutamate-cysteine ligase family 2 protein
693	 31.71	0	682918..684399	-	493	71083402	purF	SAR11_0699	-	amidophosphoribosyltransferase
694	 26.19	0	684353..684898	-	181	71083403	cvpA	SAR11_0700	-	colicin V production protein
695	 27.34	0	684906..687290	-	794	71083404	acrB	SAR11_0701	-	integral membrane protein
696	 32.84	0	687312..688730	-	472	71083405	dnaB	SAR11_0702	-	replicative DNA helicase (dnaB)
697	 24.84	-1	688798..689256	-	152	71083406	csn1	SAR11_0703	-	50S ribosomal protein L9P
698	 28.67	0	689257..689535	-	92	71083407	rpsR	SAR11_0704	-	ribosomal protein S18
699	 25.14	-1	689538..689903	-	121	71083408	rpsF	SAR11_0705	-	ribosomal protein S6
700	 30.01	0	689990..690922	+	310	71083409	fabD	SAR11_0706	-	[acyl-carrier-protein] S-malonyltransferase
701	 28.59	0	690915..691652	+	245	71083410	fabG	SAR11_0707	-	3-oxoacyl-[acyl-carrier-protein] reductase
702	 33.75	+1	691701..691940	+	79	71083411	acpP	SAR11_0708	-	Acyl carrier protein (ACP)
703	 26.22	0	691948..692580	+	210	71083412	gmk	SAR11_0709	-	guanylate kinase
704	 28.39	0	692569..693357	-	262	71083413	ksgA	SAR11_0710	-	dimethyladenosine transferase
705	 23.99	-1	693358..694320	-	320	71083414	pdxA	SAR11_0711	-	4-hydroxythreonine-4-phosphate dehydrogenase
706	 20.26	-2	694313..695230	-	305	71083415	-	SAR11_0712	-	SurA-like protein
707	 26.71	0	695237..697681	-	814	71083416	ostA	SAR11_0713	-	organic solvent tolerance-like protein
708	 21.23	-1	697671..698744	-	357	71083417	-	SAR11_0714	-	permease YjgP/YjgQ family protein
709	 20.40	-2	698741..699877	-	378	71083418	-	SAR11_0715	-	permease YjgP/YjgQ family protein
710	 27.98	0	699939..701396	+	485	71083419	pepA	SAR11_0716	-	leucyl aminopeptidase
711	 27.01	0	701389..701799	+	136	71083420	ndk	SAR11_0717	-	nucleoside diphosphate kinase
712	 23.14	-1	701796..702374	-	192	71083421	purN	SAR11_0718	-	phosphoribosylglycinamide formyltransferase
713	 27.31	0	702352..703380	-	342	71083422	purM	SAR11_0719	-	phosphoribosylformylglycinamidine cyclo-ligase
714	 20.65	-2	703605..704471	+	288	71083423	-	SAR11_0720	-	hypothetical protein
715	 22.47	-1	704468..705130	+	220	71083424	-	SAR11_0721	-	ATPase involved in DNA replication initiation
716	 30.70	0	705131..706915	+	594	71083425	aspS	SAR11_0722	-	aspartyl-tRNA synthetase
717	 29.56	0	706918..707739	-	273	71083426	nrdE	SAR11_0723	-	ribonucleotide reductase alpha subunit
718	 29.44	0	707855..708214	+	119	71083427	-	SAR11_0724	-	NADH-ubiquinone oxidoreductase 17.2 kD subunit of complex I
719	 26.72	0	708174..708581	+	135	71083428	-	SAR11_0725	-	hypothetical protein
720	 33.18	0	708578..709915	-	445	71083429	-	SAR11_0726	-	biotin carboxylase
721	 32.86	0	709915..710340	-	141	71083430	accB	SAR11_0727	-	acetyl-CoA carboxylase biotin carboxyl carrier protein
722	 26.44	0	710327..710776	-	149	71083431	aroQ	SAR11_0728	-	3-dehydroquinate dehydratase
723	 15.98	-2	710793..711011	+	72	71083432	-	SAR11_0729	-	ThiS family protein
724	 33.20	0	711014..711787	+	257	71083433	thiG	SAR11_0730	-	thiazole synthase
725	 29.03	0	711784..713643	-	619	71083434	rne	SAR11_0731	-	ribonuclease E/G
726	 28.92	0	713746..716079	+	777	71083435	mrcA	SAR11_0732	-	penicillin-binding protein 1A
727	 31.81	0	716320..717174	+	284	71083436	prfB	SAR11_0733	-	peptide chain release factor 2
728	 23.30	-1	717174..719366	+	730	71083437	-	SAR11_0734	-	hypothetical protein
729	 27.15	0	719363..720592	-	409	71083438	tyrS	SAR11_0735	-	tyrosyl-tRNA synthetase
730	 28.10	0	720637..721764	+	375	71083439	anmK	SAR11_0736	-	anhydro-N-acetylmuramic acid kinase
731	 32.12	0	721767..722423	-	218	71083440	-	SAR11_0737	-	alpha/beta hydrolase
732	 28.40	0	722560..722985	+	141	71083441	sufA	SAR11_0738	-	transcriptional regulator
733	 30.84	0	722987..724429	+	480	71083442	sufB	SAR11_0739	-	cysteine desulfurase activator complex subunit SufB
734	 28.03	0	724429..725163	+	244	71083443	sufC	SAR11_0740	-	FeS assembly ATPase SufC
735	 24.34	-1	725164..726408	+	414	71083444	sufD	SAR11_0741	-	FeS assembly protein sufD
736	 30.54	0	726405..727622	+	405	71083445	csdB	SAR11_0742	-	selenocysteine lyase chain A
737	 27.39	0	727622..728092	+	156	71083446	sufE	SAR11_0743	-	putative nifU-like protein
738	 32.32	0	728096..728392	+	98	71083447	paaD	SAR11_0744	-	phenylacetic acid degradation protein
739	 33.33	0	728392..728724	+	110	71083448	hesB	SAR11_0745	-	hesB protein
740	 29.24	0	728783..728953	+	56	71083449	-	SAR11_0746	-	hypothetical protein
741	 33.48	+1	728960..730366	-	468	71083450	glnA	SAR11_0747	-	glutamine synthetase I
742	 31.67	0	730513..730992	+	159	71083451	-	SAR11_0748	-	YbaK/prolyl-tRNA synthetase associated region
743	 25.56	0	730989..731876	+	295	71083452	-	SAR11_0749	-	ABC transporter
744	 30.03	0	731869..732777	-	302	71083453	mmuM	SAR11_0750	-	homocysteine S-methyltransferase
745	 24.70	-1	732939..733529	-	196	71083454	-	SAR11_0751	-	hypothetical protein
746	 30.39	0	733559..734305	-	248	71083455	-	SAR11_0752	-	transmembrane protein
747	 34.13	+1	734324..734824	+	166	71083456	moaB	SAR11_0754	-	molybdopterin biosynthesis protein
748	 31.71	0	734825..735070	-	81	71083457	-	SAR11_0755	-	hypothetical protein
749	 35.07	+1	735368..736918	+	516	71083458	aldA	SAR11_0756	-	acetaldehyde dehydrogenase II (ACDH-II)
750	 32.47	0	736964..737311	+	115	71083459	-	SAR11_0757	-	hypothetical protein
751	 26.67	0	737308..737877	-	189	71083460	yedZ	SAR11_0758	-	hypothetical protein
752	 31.46	0	737902..738807	-	301	71083461	yedY	SAR11_0759	-	putative sulfite oxidase subunit YedY
753	 26.80	0	738804..739247	-	147	71083462	moaE	SAR11_0760	-	molybdopterin biosynthesis protein E chain
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.