IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
603	 29.05	0	593396..594376	-	326	71083312	sfhB	SAR11_0607	-	pseudouridylate synthase
604	 28.72	0	594493..595425	-	310	71083313	-	SAR11_0608	-	Sua5/YciO/YrdC family protein
605	 21.95	-1	595446..595691	+	81	71083314	-	SAR11_0609	-	exonuclease VII small subunit
606	 27.31	0	595774..596553	+	259	71083315	ispA	SAR11_0610	-	geranyltranstransferase
607	 33.80	+1	596553..598466	+	637	71083316	dxs	SAR11_0611	-	1-deoxy-D-xylulose-5-phosphate synthase
608	 33.80	+1	598475..599557	-	360	71083317	aroC	SAR11_0612	-	chorismate synthase
609	 29.98	0	599591..600217	+	208	71083318	pdxH	SAR11_0613	-	pyridoxamine-phosphate oxidase
610	 29.39	0	600214..601227	-	337	71083319	ispB	SAR11_0614	-	octaprenyl-diphosphate synthase
611	 31.97	0	601340..602146	+	268	71083320	sohB	SAR11_0615	-	S49 family peptidase
612	 32.99	0	602136..603020	+	294	71083321	glyQ	SAR11_0616	-	glycyl-tRNA synthetase subunit alpha
613	 27.34	0	603020..605089	+	689	71083322	glyS	SAR11_0617	-	glycyl-tRNA synthetase subunit beta
614	 32.47	0	605086..607749	+	887	71083323	ppdk	SAR11_0618	-	pyruvate phosphate dikinase
615	 26.62	0	607746..608579	-	277	71083324	nadC	SAR11_0619	-	quinolinate phosphoribosyl transferase
616	 33.74	+1	608585..609574	-	329	71083325	nadA	SAR11_0620	-	quinolinate synthetase
617	 26.58	0	609626..610513	-	295	71083326	-	SAR11_0621	-	GcvT-like aminomethyltransferase protein
618	 31.34	0	610557..611861	+	434	71083327	pyrC2	SAR11_0622	-	dihydroorotase
619	 29.73	0	611858..612190	-	110	71083328	qacE	SAR11_0623	-	small multidrug resistance protein
620	 33.65	+1	612190..614085	-	631	71083329	prpE	SAR11_0624	-	hypothetical protein
621	 39.58	+2	614302..615069	+	255	71083330	-	SAR11_0625	-	bacteriorhodopsin
622	 36.45	+1	615153..615473	+	106	71083331	fdxB	SAR11_0626	-	ferredoxin
623	 29.50	0	615474..616490	+	338	71083332	trxB2	SAR11_0627	-	thioredoxin-disulfide reductase
624	 29.19	0	616487..617113	+	208	71083333	yfcG	SAR11_0628	-	glutathione S-transferase
625	 24.81	-1	617122..617895	+	257	71083334	-	SAR11_0629	-	MOSC domain-containing protein
626	 31.73	0	617929..618240	-	103	71083335	dksA	SAR11_0630	-	DnaK suppressor protein
627	 28.36	0	618356..618556	+	66	71083336	-	SAR11_0631	-	hypothetical protein
628	 25.91	0	618580..619872	+	430	71083337	-	SAR11_0632	-	hypothetical protein
629	 26.92	0	619869..620741	+	290	71083338	-	SAR11_0633	-	glycosyl transferase
630	 29.35	0	620734..622014	-	426	71083339	umuC	SAR11_0634	-	hypothetical protein
631	 32.07	0	621992..622387	-	131	71083340	mucA	SAR11_0635	-	hypothetical protein
632	 26.67	0	622553..623122	+	189	71083341	-	SAR11_0636	-	hypothetical protein
633	 30.03	0	623123..623485	+	120	71083342	-	SAR11_0637	-	hypothetical protein
634	 27.15	0	623595..624419	+	274	71083343	-	SAR11_0638	-	phosphoribulokinase/uridine kinase family protein
635	 29.79	0	624419..625717	+	432	71083344	tolC	SAR11_0640	-	Outer membrane protein TolC
636	 35.84	+1	625897..626973	+	358	71083345	recA	SAR11_0641	-	recA protein
637	 32.35	0	627169..628284	-	371	71083346	-	SAR11_0642	-	trypsin-like serine protease
638	 31.01	0	628540..631209	+	889	71083347	alaS	SAR11_0643	-	alanine-tRNA ligase
639	 32.76	0	631202..632416	-	404	71083348	icdA	SAR11_0644	-	isocitrate dehydrogenase
640	 31.02	0	632494..633141	+	215	71083349	psd2	SAR11_0645	-	phosphatidylserine decarboxylase
641	 28.48	0	633145..633948	+	267	71083350	pssA	SAR11_0646	-	phosphatidylserine synthase
642	 30.37	0	633949..634860	+	303	71083351	-	SAR11_0647	-	glycosyl transferase family protein
643	 29.90	0	634861..635472	+	203	71083352	ftsJ	SAR11_0648	-	FtsJ-like methyltransferase
644	 30.64	0	635510..636586	+	358	71083353	guaB	SAR11_0649	-	IMP dehydrogenase-like protein
645	 22.60	-1	636586..637023	+	145	71083354	-	SAR11_0650	-	TPR-like
646	 26.56	0	637013..638578	+	521	71083355	guaA	SAR11_0651	-	bifunctional GMP synthase/glutamine amidotransferase protein
647	 35.48	+1	638605..639024	+	139	71083356	gloA	SAR11_0652	-	lactoylglutathione lyase
648	 28.68	0	639028..639801	+	257	71083357	panB	SAR11_0653	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
649	 26.99	0	639803..640417	-	204	71083358	-	SAR11_0654	-	hypothetical protein
650	 34.77	+1	640515..641771	-	418	71083359	braC	SAR11_0655	-	Leu/Ile/Val-binding protein
651	 31.79	0	641907..642746	+	279	71083360	braD	SAR11_0656	-	branched chain amino acid ABC transporter
652	 32.25	0	642749..643759	+	336	71083361	braE	SAR11_0657	-	branched chain amino acid ABC transporter
653	 29.74	0	643756..644478	+	240	71083362	-	SAR11_0658	-	LivG-like protein
654	 30.79	0	644468..645175	+	235	71083363	braG	SAR11_0659	-	high-affinity branched-chain amino acid transport ATP-binding protein
655	 33.08	0	645176..645961	-	261	71083364	-	SAR11_0660	-	hypothetical protein
656	 28.05	0	645966..646457	-	163	71083365	-	SAR11_0661	-	hypothetical protein
657	 30.58	0	646461..647258	-	265	71083366	ybgL	SAR11_0662	-	hypothetical protein
658	 26.93	0	647262..647948	+	228	71083367	kipI	SAR11_0663	-	allophanate hydrolase subunit 1
659	 27.46	0	647941..648894	+	317	71083368	ybgK	SAR11_0664	-	allophanate hydrolase subunit 2
660	 30.95	0	648881..649762	+	293	71083369	-	SAR11_0665	-	integral membrane protein
661	 32.34	0	649954..651060	+	368	71083370	gcvT	SAR11_0666	-	glycine cleavage system protein T2
662	 33.33	0	651057..651437	+	126	71083371	gcvH	SAR11_0667	-	glycine cleavage H-protein
663	 33.23	0	651438..654296	+	952	71083372	gcvP	SAR11_0668	-	glycine dehydrogenase
664	 26.43	0	654309..655553	+	414	71083373	-	SAR11_0669	-	flavin containing amine oxidoreductas
665	 23.96	-1	655546..656313	+	255	71083374	-	SAR11_0670	-	hypothetical protein
666	 24.68	-1	656313..657491	+	392	71083375	-	SAR11_0672	-	cyclopropane-fatty-acyl-phospholipid synthase
667	 30.78	0	657505..658053	+	182	71083376	-	SAR11_0673	-	hypothetical protein
668	 31.23	0	658050..658811	-	253	71083377	-	SAR11_0674	-	short chain dehydrogenase
669	 25.21	0	658833..659300	+	155	71083378	tspo	SAR11_0675	-	TspO/MBR family protein
670	 33.51	+1	659309..660412	+	367	71083379	-	SAR11_0676	-	hypothetical protein
671	 25.70	0	660441..660977	+	178	71083380	-	SAR11_0677	-	hypothetical protein
672	 30.85	0	660987..662438	-	483	71083381	-	SAR11_0678	-	hypothetical protein
673	 33.51	+1	662447..665215	-	922	71083382	fdhF	SAR11_0679	-	formate dehydrogenase Alpha subunit (fdhF-2)
674	 32.22	0	665215..666744	-	509	71083383	fdsB	SAR11_0680	-	NAD-dependent formate dehydrogenase beta subunit
675	 28.23	0	666877..667719	-	280	71083384	fdhD	SAR11_0681	-	formate dehydrogenase chain D
676	 30.40	0	667724..668200	-	158	71083385	-	SAR11_0682	-	HPP family protein
677	 28.07	0	668203..668601	-	132	71083386	-	SAR11_0683	-	NifU-like domain-containing protein
678	 27.21	0	668645..669265	+	206	71083387	mobA	SAR11_0684	-	hypothetical protein
679	 26.04	0	669258..670505	+	415	71083388	moeA	SAR11_0685	-	molybdopterin biosynthesis protein moeA
680	 31.15	0	670773..671459	+	228	71083389	-	SAR11_0686	-	hypothetical protein
681	 32.51	0	671465..672682	+	405	71083390	pepQ	SAR11_0687	-	creatinase
682	 34.59	+1	672686..673798	+	370	71083391	gatM	SAR11_0688	-	glycine amidinotransferase
683	 34.00	+1	673801..674853	+	350	71083392	-	SAR11_0689	-	threonine aldolase
684	 34.36	+1	674846..675040	-	64	71083393	-	SAR11_0690	-	hypothetical protein
685	 31.62	0	675167..676099	-	310	71083394	-	SAR11_0691	-	hypothetical protein
686	 32.51	0	676379..676864	-	161	71083395	yajQ	SAR11_0692	-	nucleotide-binding protein
687	 25.72	0	676886..677161	+	91	71083396	slyX	SAR11_0693	-	SlyX
688	 31.30	0	677178..678359	+	393	71083397	-	SAR11_0694	-	hypothetical protein
689	 31.82	0	678384..679706	-	440	71083398	ycaD	SAR11_0695	-	transporter
690	 32.64	0	679765..680625	-	286	71083399	salY	SAR11_0696	-	hypothetical protein
691	 24.62	-1	680622..681551	-	309	71083400	gshB	SAR11_0697	-	glutathione synthase
692	 28.63	0	681541..682836	-	431	71083401	gsh1	SAR11_0698	-	glutamate-cysteine ligase family 2 protein
693	 31.71	0	682918..684399	-	493	71083402	purF	SAR11_0699	-	amidophosphoribosyltransferase
694	 26.19	0	684353..684898	-	181	71083403	cvpA	SAR11_0700	-	colicin V production protein
695	 27.34	0	684906..687290	-	794	71083404	acrB	SAR11_0701	-	integral membrane protein
696	 32.84	0	687312..688730	-	472	71083405	dnaB	SAR11_0702	-	replicative DNA helicase (dnaB)
697	 24.84	-1	688798..689256	-	152	71083406	csn1	SAR11_0703	-	50S ribosomal protein L9P
698	 28.67	0	689257..689535	-	92	71083407	rpsR	SAR11_0704	-	ribosomal protein S18
699	 25.14	-1	689538..689903	-	121	71083408	rpsF	SAR11_0705	-	ribosomal protein S6
700	 30.01	0	689990..690922	+	310	71083409	fabD	SAR11_0706	-	[acyl-carrier-protein] S-malonyltransferase
701	 28.59	0	690915..691652	+	245	71083410	fabG	SAR11_0707	-	3-oxoacyl-[acyl-carrier-protein] reductase
702	 33.75	+1	691701..691940	+	79	71083411	acpP	SAR11_0708	-	Acyl carrier protein (ACP)
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.