IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.30   STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
16	 26.93	0	17539..19569	-	676	71082725	ligA	SAR11_0016	-	DNA ligase
17	 27.33	0	19571..20419	-	282	71082726	comL	SAR11_0017	-	putative competence lipoprotein ComL
18	 28.23	0	20458..21378	-	306	71082727	lpxC	SAR11_0018	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
19	 24.14	-1	21444..22553	-	369	71082728	ftsA	SAR11_0019	-	cell division protein FtsA
20	 22.42	-1	22553..23230	-	225	71082729	ftsQ	SAR11_0020	-	cell division protein FtsQ
21	 26.67	0	23211..24125	-	304	71082730	ddlB	SAR11_0021	-	D-alanine--D-alanine ligase B
22	 27.28	0	24127..25035	-	302	71082731	murB	SAR11_0022	-	UDP-N-acetylenolpyruvoylglucosamine reductase
23	 27.03	0	25035..26429	-	464	71082732	murC	SAR11_0023	-	UDP-N-acetylmuramate--L-alanine ligase
24	 23.53	-1	26419..27489	-	356	71082733	murG	SAR11_0024	-	UDP-N-acetylglucosamine
25	 24.36	-1	27490..28614	-	374	71082734	ftsW	SAR11_0025	-	cell division protein FtsW
26	 20.45	-2	28611..29906	-	431	71082735	murD	SAR11_0026	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
27	 29.01	0	29906..30991	-	361	71082736	mraY	SAR11_0027	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
28	 23.36	-1	30981..33827	-	948	71082737	murEF	SAR11_0028	-	putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
29	 27.25	0	33835..35511	-	558	71082738	ftsI	SAR11_0029	-	cell division protein FtsI
30	 22.33	-1	35504..35812	-	102	71082739	ftsL	SAR11_0030	-	cell division protein FtsL
31	 27.10	0	35809..36819	-	336	71082740	mraW	SAR11_0031	-	S-adenosyl-methyltransferase
32	 35.62	+1	36838..38325	-	495	71082741	ftsZ	SAR11_0032	-	cell division protein FtsZ
33	 29.91	0	38328..38795	-	155	71082742	mraZ	SAR11_0033	-	cell division protein MraZ
34	 26.21	0	39448..40191	-	247	71082743	ybjR	SAR11_0034	-	N-acetylmuramoyl-L-alanine amidase
35	 32.44	0	40261..41046	+	261	71082744	vacJ	SAR11_0035	-	lipoprotein precursor
36	 27.44	0	41060..41653	+	197	71082745	yrbC	SAR11_0036	-	hypothetical protein
37	 30.59	0	41900..43687	-	595	71082746	rpoD	SAR11_0037	-	RNA polymerase sigma factor RpoD
38	 27.53	0	43790..45565	-	591	71082747	dnaG	SAR11_0038	-	DNA primase
39	 28.14	0	45565..46026	-	153	71082748	yqeY	SAR11_0039	-	YqeY-like protein
40	 30.08	0	46155..47351	+	398	71082749	carA	SAR11_0040	-	carbamoylphosphate synthase small subunit
41	 33.21	0	47329..50553	+	1074	71082750	carB	SAR11_0041	-	carbamoyl-phosphate synthase large chain
42	 31.65	0	50650..52728	-	692	71082751	-	SAR11_0042	-	putative secretory autotransporter
43	 28.37	0	52886..53026	-	46	71082752	-	SAR11_0043	-	hypothetical protein
44	 31.58	0	53177..55348	+	723	71082753	-	SAR11_0044	-	Outer membrane autotransporter
45	 31.30	0	55348..55692	+	114	71082754	-	SAR11_0045	-	hypothetical protein
46	 30.96	0	55701..57719	-	672	71082755	-	SAR11_0046	-	Outer membrane autotransporter
47	 23.74	-1	58036..59004	+	322	71082756	-	SAR11_0047	-	transcription regulatory protein
48	 32.86	0	58997..59845	-	282	71082757	-	SAR11_0048	-	Sodium bile symporter family protein
49	 32.58	0	60069..62204	-	711	71082758	-	SAR11_0049	-	ammonium transporter
50	 32.13	0	62323..64560	-	745	71082759	-	SAR11_0050	-	ammonium transporter
51	 31.52	0	64574..64903	-	109	71082760	copZ	SAR11_0051	-	heavy metal transport/detoxification protein
52	 28.18	0	65036..65326	-	96	71082761	-	SAR11_0052	-	hypothetical protein
53	 32.88	0	65399..65836	-	145	71082762	pulG	SAR11_0053	-	putative pseudo-pilin PulG
54	 37.65	+2	65846..66331	-	161	71082763	pilA	SAR11_0054	-	pilin
55	 30.53	0	66490..66774	+	94	71082764	-	SAR11_0055	-	Sulfate transporter/antisigma-factor antagonist STAS
56	 30.67	0	66771..67070	+	99	71082765	spoIIA	SAR11_0056	-	Sulfate transporter/antisigma-factor antagonist STAS
57	 28.51	0	67078..67512	+	144	71082766	rsbW	SAR11_0057	-	anti-sigma regulatory factor (Ser/Thr protein kinase)
58	 31.06	0	67509..68741	-	410	71082767	pilC	SAR11_0058	-	Type II secretion system PilC
59	 31.28	0	68744..70495	-	583	71082768	pilB	SAR11_0059	-	Type II secretion system PilB
60	 31.21	0	70495..72051	-	518	71082769	pilQ	SAR11_0060	-	Type II secretion PilQ
61	 27.81	0	72054..72560	-	168	71082770	pilP	SAR11_0061	-	type 4 fimbrial biogenesis protein PilP
62	 28.32	0	72547..73224	-	225	71082771	pilO	SAR11_0062	-	type 4 fimbrial biogenesis protein PilO
63	 27.16	0	73227..75770	-	847	71082772	pilMN	SAR11_0063	-	Type II secretion
64	 28.21	0	77115..78461	-	448	71082773	rsbU	SAR11_0064	-	sigma factor sigB regulation protein
65	 26.27	0	78561..79325	+	254	71082774	pild	SAR11_0065	-	Type II secretion PilD
66	 22.78	-1	79386..80105	+	239	71082775	fimc	SAR11_0067	-	membrane-bound pili assembly protein Fimc
67	 37.25	+1	80345..84916	-	1523	71082776	pilY1	SAR11_0068	-	Type II secretion PilY1
68	 30.86	0	85064..85588	-	174	71082777	-	SAR11_0069	-	pilX-type protein
69	 33.33	0	85664..86368	-	234	71082778	-	SAR11_0070	-	type IV pilus assembly protein PilW
70	 31.35	0	86437..87291	-	284	71082779	-	SAR11_0071	-	type IV pilin secretion protein
71	 29.95	0	87366..88016	-	216	71082780	-	SAR11_0072	-	putative pilV-like pilin protein
72	 35.67	+1	88021..88746	-	241	71082781	-	SAR11_0073	-	pilin protein PilU
73	 33.63	+1	88721..89734	-	337	71082782	pilT	SAR11_0074	-	Type II secretion PilT
74	 32.58	0	89886..90548	-	220	71082783	-	SAR11_0075	-	hypothetical protein
75	 26.46	0	90548..91492	-	314	71082784	-	SAR11_0076	-	nucleoside-diphosphate-sugar epimerase
76	 35.03	+1	91514..92458	+	314	71082785	trxB	SAR11_0077	-	thioredoxin reductase
77	 32.16	0	92500..93519	+	339	71082786	-	SAR11_0078	-	NAD dependent epimerase/dehydratase protein
78	 32.44	0	93511..93960	-	149	71082787	ytoQ	SAR11_0079	-	hypothetical protein
79	 33.00	0	93960..95159	-	399	71082788	aatA	SAR11_0080	-	aspartate transaminase
80	 33.33	0	95195..97366	+	723	71082789	uvrB	SAR11_0081	-	excinuclease ABC subunit B
81	 28.69	0	97348..98100	+	250	71082790	-	SAR11_0082	-	short-chain dehydrogenase
82	 22.30	-1	98097..98522	+	141	71082791	folB	SAR11_0083	-	dihydroneopterin aldolase
83	 30.01	0	98509..100344	+	611	71082792	uvrC	SAR11_0084	-	excinuclease ABC subunit C
84	 29.74	0	100347..100931	+	194	71082793	pgsA	SAR11_0085	-	CDP-diacylglycerol
85	 32.99	0	100928..101809	-	293	71082794	ilvE	SAR11_0086	-	branched-chain amino acid aminotransferase
86	 25.34	0	101880..102317	+	145	71082795	petP	SAR11_0087	-	transcriptional regulator
87	 25.52	0	102310..102987	+	225	71082796	petR	SAR11_0088	-	two-component system
88	 27.95	0	102968..104287	+	439	71082797	envZ	SAR11_0089	-	osmolarity sensor protein envZ
89	 19.61	-2	104265..104519	-	84	71082798	-	SAR11_0090	-	hypothetical protein
90	 28.79	0	104566..105336	+	256	71082799	lgt	SAR11_0091	-	prolipoprotein diacylglyceryl transferase
91	 25.67	0	105326..106369	+	347	71082800	cdfA	SAR11_0092	-	cyclopropane-fatty-acyl-phospholipid synthase
92	 21.43	-1	106800..107135	+	111	71082801	-	SAR11_0093	-	hypothetical protein
93	 30.44	0	107142..108074	+	310	71082802	prsA	SAR11_0094	-	ribose-phosphate pyrophosphokinase
94	 33.77	+1	108119..108805	+	228	71082803	rplY	SAR11_0095	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
95	 28.16	0	108851..109411	+	186	71082804	pth	SAR11_0096	-	peptidyl-tRNA hydrolase
96	 30.54	0	109411..110484	+	357	71082805	-	SAR11_0097	-	translation-associated GTPase
97	 34.10	+1	110461..111240	-	259	71082806	fbcH	SAR11_0098	-	ubiquinol-cytochrome-c reductase
98	 34.68	+1	111245..112504	-	419	71082807	petB	SAR11_0099	-	ubiquinol-cytochrome-c reductase
99	 37.25	+1	112514..113023	-	169	71082808	petA	SAR11_0100	-	cytochrome b6-f complex iron-sulfur subunit
100	 28.35	0	113110..113571	+	153	71082809	spoU	SAR11_0101	-	rRNA methylase
101	 29.35	0	113571..114398	+	275	71082810	hemF	SAR11_0102	-	coproporphyrinogen III oxidase
102	 30.61	0	114400..114876	+	158	71082811	greA	SAR11_0103	-	transcription elongation factor
103	 25.33	0	114873..116147	-	424	71082812	pcnB	SAR11_0104	-	Poly(A) polymerase (PAP)
104	 25.53	0	116257..117102	-	281	71082813	ispE	SAR11_0105	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
105	 24.67	-1	117106..118791	-	561	71082814	-	SAR11_0106	-	TPR repeat-containing protein
106	 26.78	0	118803..119534	+	243	71082815	-	SAR11_0107	-	DNA-directed DNA polymerase
107	 28.16	0	119534..120094	+	186	71082816	rnhB	SAR11_0108	-	ribonuclease HII (RNase HII)
108	 30.44	0	120216..121286	+	356	71082817	babIM	SAR11_0109	-	site-specific DNA methyltransferase
109	 26.56	0	121283..122434	-	383	71082818	nah	SAR11_0110	-	salicylate 1-monooxygenase
110	 25.18	0	122434..123414	-	326	71082819	mutY	SAR11_0111	-	A/G-specific adenine glycosylase
111	 25.97	0	123415..123903	+	162	71082820	-	SAR11_0112	-	hypothetical protein
112	 27.71	0	123975..124490	+	171	71082821	-	SAR11_0113	-	DsbA-like protein
113	 30.19	0	124499..127072	+	857	71082822	smc	SAR11_0114	-	SMC family chromosome segregation protein
114	 32.97	0	127081..127356	+	91	71082823	-	SAR11_0115	-	transmembrane protein
115	 33.06	0	127369..128103	+	244	71082824	atpB	SAR11_0116	-	F0F1 ATP synthase subunit A
29.30	MEAN

4.13	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.