version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 562 21.84 -1 556732..558045 + 437 71083271 - SAR11_0566 - O-antigen polymerase 563 19.66 -2 558028..559029 - 333 71083272 - SAR11_0567 - hypothetical protein 564 23.05 -1 559270..560484 + 404 71083273 - SAR11_0568 - D-amino acid oxidoreductase family protein 565 22.99 -1 560488..561444 + 318 71083274 galE SAR11_0569 - UDP-glucose 4-epimerase 566 29.79 0 561627..562670 + 347 71083275 gmd SAR11_0570 - gdpmannose 4,6-dehydratase 567 25.03 -1 562663..563601 + 312 71083276 wcaG SAR11_0571 - GDP-fucose synthetase chain A 568 24.80 -1 563601..564479 + 292 71083277 rfaD SAR11_0572 - ADP-L-glycero-D-mannoheptose-6-epimerase 569 25.40 0 564660..564785 + 41 71083278 rpmJ SAR11_0573 - ribosomal protein L36 570 28.93 0 564911..565999 + 362 71083279 pntA SAR11_0574 - alanine dehydrogenase/PNT 571 30.10 0 566004..566312 + 102 71083280 pntAB SAR11_0575 - NAD(P) transhydrogenase subunit alpha part 2 572 34.19 +1 566315..567709 + 464 71083281 pntB SAR11_0576 - NAD(p) transhydrogenase subunit beta 573 28.76 0 567715..568413 + 232 71083282 tal SAR11_0577 - putative translaldolase 574 21.03 -2 568515..568709 - 64 71083283 rpsU SAR11_0578 - 30S ribosomal protein S21 575 30.85 0 568765..569328 - 187 71083284 - SAR11_0579 - hypothetical protein 576 34.20 +1 569353..569583 - 76 71083285 rpmE SAR11_0580 - 50S ribosomal protein L31 577 31.04 0 569619..570359 - 246 71083286 suhB SAR11_0581 - extragenic suppressor protein suhB 578 29.59 0 570365..570925 - 186 71083287 efp SAR11_0582 - elongation factor P (EF-P) 579 24.04 -1 570922..571545 - 207 71083288 thiE SAR11_0583 - thiamine-phosphate pyrophosphorylase 580 33.33 0 571532..572542 - 336 71083289 fbaB SAR11_0584 - fructose-bisphosphate aldolase 581 27.14 0 572544..573722 - 392 71083290 pgk SAR11_0585 - phosphoglycerate kinase 582 30.46 0 573722..574729 - 335 71083291 gap SAR11_0586 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 583 31.09 0 574732..576690 - 652 71083292 tktB SAR11_0587 - transketolase 584 22.84 -1 576744..577067 + 107 71083293 yqgN SAR11_0588 - 5-formyltetrahydrofolate cyclo-ligase-like protein 585 25.73 0 577055..577501 + 148 71083294 - SAR11_0589 - hypothetical protein 586 23.86 -1 577506..578054 + 182 71083295 - SAR11_0590 - 5-formyltetrahydrofolate cyclo-ligase 587 31.23 0 578051..578857 + 268 71083296 - SAR11_0591 - hypothetical protein 588 29.61 0 578863..579588 + 241 71083297 - SAR11_0592 - hypothetical protein 589 29.29 0 579588..580082 + 164 71083298 ruvC SAR11_0593 - crossover junction endodeoxyribonuclease 590 30.96 0 580136..580810 + 224 71083299 tolQ SAR11_0594 - inner membrane protein TolQ 591 31.18 0 580812..581228 + 138 71083300 tolR SAR11_0595 - tolR protein 592 30.74 0 581234..582043 + 269 71083301 tolA SAR11_0596 - TolA protein 593 31.10 0 582046..583386 + 446 71083302 tolB SAR11_0597 - translocation protein TolB 594 32.29 0 583474..583953 + 159 71083303 ompA SAR11_0598 - OmpA family protein 595 29.74 0 584040..585014 + 324 71083304 - SAR11_0599 - hypothetical protein 596 24.16 -1 585136..586029 + 297 71083305 mesJ SAR11_0600 - cell cycle protein mesj 597 35.61 +1 586081..587967 + 628 71083306 ftsH SAR11_0601 - metalloprotease FtsH 598 24.98 -1 587974..589026 + 350 71083307 folP SAR11_0602 - dihydropteroate synthase-like protein 599 28.23 0 589026..590357 + 443 71083308 mrsA SAR11_0603 - phosphoglucomutase/phosphomannomutase family protein MrsA 600 29.40 0 590359..591171 + 270 71083309 thiD SAR11_0604 - phosphomethylpyrimidine kinase 601 33.49 +1 591171..592463 + 430 71083310 adsS SAR11_0605 - adenylosuccinate synthetase 602 31.52 0 592460..593341 - 293 71083311 rpoH SAR11_0606 - RNA polymerase factor sigma-32 603 29.05 0 593396..594376 - 326 71083312 sfhB SAR11_0607 - pseudouridylate synthase 604 28.72 0 594493..595425 - 310 71083313 - SAR11_0608 - Sua5/YciO/YrdC family protein 605 21.95 -1 595446..595691 + 81 71083314 - SAR11_0609 - exonuclease VII small subunit 606 27.31 0 595774..596553 + 259 71083315 ispA SAR11_0610 - geranyltranstransferase 607 33.80 +1 596553..598466 + 637 71083316 dxs SAR11_0611 - 1-deoxy-D-xylulose-5-phosphate synthase 608 33.80 +1 598475..599557 - 360 71083317 aroC SAR11_0612 - chorismate synthase 609 29.98 0 599591..600217 + 208 71083318 pdxH SAR11_0613 - pyridoxamine-phosphate oxidase 610 29.39 0 600214..601227 - 337 71083319 ispB SAR11_0614 - octaprenyl-diphosphate synthase 611 31.97 0 601340..602146 + 268 71083320 sohB SAR11_0615 - S49 family peptidase 612 32.99 0 602136..603020 + 294 71083321 glyQ SAR11_0616 - glycyl-tRNA synthetase subunit alpha 613 27.34 0 603020..605089 + 689 71083322 glyS SAR11_0617 - glycyl-tRNA synthetase subunit beta 614 32.47 0 605086..607749 + 887 71083323 ppdk SAR11_0618 - pyruvate phosphate dikinase 615 26.62 0 607746..608579 - 277 71083324 nadC SAR11_0619 - quinolinate phosphoribosyl transferase 616 33.74 +1 608585..609574 - 329 71083325 nadA SAR11_0620 - quinolinate synthetase 617 26.58 0 609626..610513 - 295 71083326 - SAR11_0621 - GcvT-like aminomethyltransferase protein 618 31.34 0 610557..611861 + 434 71083327 pyrC2 SAR11_0622 - dihydroorotase 619 29.73 0 611858..612190 - 110 71083328 qacE SAR11_0623 - small multidrug resistance protein 620 33.65 +1 612190..614085 - 631 71083329 prpE SAR11_0624 - hypothetical protein 621 39.58 +2 614302..615069 + 255 71083330 - SAR11_0625 - bacteriorhodopsin 622 36.45 +1 615153..615473 + 106 71083331 fdxB SAR11_0626 - ferredoxin 623 29.50 0 615474..616490 + 338 71083332 trxB2 SAR11_0627 - thioredoxin-disulfide reductase 624 29.19 0 616487..617113 + 208 71083333 yfcG SAR11_0628 - glutathione S-transferase 625 24.81 -1 617122..617895 + 257 71083334 - SAR11_0629 - MOSC domain-containing protein 626 31.73 0 617929..618240 - 103 71083335 dksA SAR11_0630 - DnaK suppressor protein 627 28.36 0 618356..618556 + 66 71083336 - SAR11_0631 - hypothetical protein 628 25.91 0 618580..619872 + 430 71083337 - SAR11_0632 - hypothetical protein 629 26.92 0 619869..620741 + 290 71083338 - SAR11_0633 - glycosyl transferase 630 29.35 0 620734..622014 - 426 71083339 umuC SAR11_0634 - hypothetical protein 631 32.07 0 621992..622387 - 131 71083340 mucA SAR11_0635 - hypothetical protein 632 26.67 0 622553..623122 + 189 71083341 - SAR11_0636 - hypothetical protein 633 30.03 0 623123..623485 + 120 71083342 - SAR11_0637 - hypothetical protein 634 27.15 0 623595..624419 + 274 71083343 - SAR11_0638 - phosphoribulokinase/uridine kinase family protein 635 29.79 0 624419..625717 + 432 71083344 tolC SAR11_0640 - Outer membrane protein TolC 636 35.84 +1 625897..626973 + 358 71083345 recA SAR11_0641 - recA protein 637 32.35 0 627169..628284 - 371 71083346 - SAR11_0642 - trypsin-like serine protease 638 31.01 0 628540..631209 + 889 71083347 alaS SAR11_0643 - alanine-tRNA ligase 639 32.76 0 631202..632416 - 404 71083348 icdA SAR11_0644 - isocitrate dehydrogenase 640 31.02 0 632494..633141 + 215 71083349 psd2 SAR11_0645 - phosphatidylserine decarboxylase 641 28.48 0 633145..633948 + 267 71083350 pssA SAR11_0646 - phosphatidylserine synthase 642 30.37 0 633949..634860 + 303 71083351 - SAR11_0647 - glycosyl transferase family protein 643 29.90 0 634861..635472 + 203 71083352 ftsJ SAR11_0648 - FtsJ-like methyltransferase 644 30.64 0 635510..636586 + 358 71083353 guaB SAR11_0649 - IMP dehydrogenase-like protein 645 22.60 -1 636586..637023 + 145 71083354 - SAR11_0650 - TPR-like 646 26.56 0 637013..638578 + 521 71083355 guaA SAR11_0651 - bifunctional GMP synthase/glutamine amidotransferase protein 647 35.48 +1 638605..639024 + 139 71083356 gloA SAR11_0652 - lactoylglutathione lyase 648 28.68 0 639028..639801 + 257 71083357 panB SAR11_0653 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 649 26.99 0 639803..640417 - 204 71083358 - SAR11_0654 - hypothetical protein 650 34.77 +1 640515..641771 - 418 71083359 braC SAR11_0655 - Leu/Ile/Val-binding protein 651 31.79 0 641907..642746 + 279 71083360 braD SAR11_0656 - branched chain amino acid ABC transporter 652 32.25 0 642749..643759 + 336 71083361 braE SAR11_0657 - branched chain amino acid ABC transporter 653 29.74 0 643756..644478 + 240 71083362 - SAR11_0658 - LivG-like protein 654 30.79 0 644468..645175 + 235 71083363 braG SAR11_0659 - high-affinity branched-chain amino acid transport ATP-binding protein 655 33.08 0 645176..645961 - 261 71083364 - SAR11_0660 - hypothetical protein 656 28.05 0 645966..646457 - 163 71083365 - SAR11_0661 - hypothetical protein 657 30.58 0 646461..647258 - 265 71083366 ybgL SAR11_0662 - hypothetical protein 658 26.93 0 647262..647948 + 228 71083367 kipI SAR11_0663 - allophanate hydrolase subunit 1 659 27.46 0 647941..648894 + 317 71083368 ybgK SAR11_0664 - allophanate hydrolase subunit 2 660 30.95 0 648881..649762 + 293 71083369 - SAR11_0665 - integral membrane protein 661 32.34 0 649954..651060 + 368 71083370 gcvT SAR11_0666 - glycine cleavage system protein T2 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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