IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
533	 28.54	0	530587..531378	-	263	71083242	tktN	SAR11_0537	-	transketolase
534	 25.03	-1	531418..532356	+	312	71083243	-	SAR11_0538	-	UDP-glucose 4 epimerase
535	 24.85	-1	532349..533857	+	502	71083244	rfaE	SAR11_0539	-	cytidylyltransferase/carbohydrate (or pyrimidine) kinase
536	 21.16	-1	533858..534580	+	240	71083245	spsA	SAR11_0540	-	spsA-like glycosyl transferase
537	 24.04	-1	534588..535577	+	329	71083246	rfbB	SAR11_0541	-	dtdpglucose 4,6-dehydratase
538	 17.70	-2	535581..537269	-	562	71083247	-	SAR11_0542	-	unknown membrane protein
539	 14.25	-2	537246..537701	+	151	71083248	-	SAR11_0543	-	unknown membrane protein
540	 15.15	-2	537702..538163	+	153	71083249	-	SAR11_0544	-	unknown membrane protein
541	 23.99	-1	538166..538732	+	188	71083250	gmhA	SAR11_0545	-	phosphoheptose isomerase
542	 22.76	-1	538725..539216	-	163	71083251	gmhB	SAR11_0546	-	D-glycero-D-manno-heptose 1,7 bisphophate phosphatase
543	 20.91	-2	539250..540239	-	329	71083252	-	SAR11_0547	-	D amino acid oxidase (DAO) family protein
544	 23.56	-1	540307..541656	-	449	71083253	-	SAR11_0548	-	unknown membrane protein
545	 20.30	-2	541643..542854	-	403	71083254	-	SAR11_0549	-	unknown membrane protein
546	 23.72	-1	543013..544125	-	370	71083255	rfaG	SAR11_0550	-	glycosyl transferase family protein
547	 19.18	-2	544167..545240	-	357	71083256	-	SAR11_0551	-	glycosyl transferase family protein
548	 23.50	-1	545259..546092	+	277	71083257	lgtF	SAR11_0552	-	spsA-like protein
549	 27.84	0	546079..547206	+	375	71083258	-	SAR11_0553	-	DegT/DnrJ/EryC1/StrS aminotransferase
550	 25.84	0	547210..548943	+	577	71083259	-	SAR11_0554	-	carbamoyltransferase
551	 19.61	-2	548924..549535	+	203	71083260	-	SAR11_0555	-	CMAS family protein
552	 21.25	-1	549536..550669	-	377	71083261	-	SAR11_0556	-	glycosyl transferase
553	 20.35	-2	550866..551843	+	325	71083262	-	SAR11_0557	-	glycosyl transferase family protein
554	 23.22	-1	551827..552528	+	233	71083263	-	SAR11_0558	-	cyclopropane-fatty-acyl-phospholipid
555	 22.22	-1	552525..553595	-	356	71083264	rfaK	SAR11_0559	-	1,2-N-acetylglucosaminetransferase
556	 24.68	-1	553607..554311	+	234	71083265	-	SAR11_0560	-	PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase
557	 17.14	-2	554312..555052	+	246	71083266	-	SAR11_0561	-	oxidoreductase family protein
558	 21.22	-1	555224..555991	-	255	71083267	wbyL	SAR11_0563	-	glycosyl transferase
559	 23.81	-1	555992..556138	-	48	71083268	-	SAR11_1726	-	hypothetical protein
560	 28.57	0	556146..556334	-	62	71083269	-	SAR11_0564	-	putative reductase
561	 26.78	0	556386..556751	+	121	71083270	-	SAR11_0565	-	hypothetical protein
562	 21.84	-1	556732..558045	+	437	71083271	-	SAR11_0566	-	O-antigen polymerase
563	 19.66	-2	558028..559029	-	333	71083272	-	SAR11_0567	-	hypothetical protein
564	 23.05	-1	559270..560484	+	404	71083273	-	SAR11_0568	-	D-amino acid oxidoreductase family protein
565	 22.99	-1	560488..561444	+	318	71083274	galE	SAR11_0569	-	UDP-glucose 4-epimerase
566	 29.79	0	561627..562670	+	347	71083275	gmd	SAR11_0570	-	gdpmannose 4,6-dehydratase
567	 25.03	-1	562663..563601	+	312	71083276	wcaG	SAR11_0571	-	GDP-fucose synthetase chain A
568	 24.80	-1	563601..564479	+	292	71083277	rfaD	SAR11_0572	-	ADP-L-glycero-D-mannoheptose-6-epimerase
569	 25.40	0	564660..564785	+	41	71083278	rpmJ	SAR11_0573	-	ribosomal protein L36
570	 28.93	0	564911..565999	+	362	71083279	pntA	SAR11_0574	-	alanine dehydrogenase/PNT
571	 30.10	0	566004..566312	+	102	71083280	pntAB	SAR11_0575	-	NAD(P) transhydrogenase subunit alpha part 2
572	 34.19	+1	566315..567709	+	464	71083281	pntB	SAR11_0576	-	NAD(p) transhydrogenase subunit beta
573	 28.76	0	567715..568413	+	232	71083282	tal	SAR11_0577	-	putative translaldolase
574	 21.03	-2	568515..568709	-	64	71083283	rpsU	SAR11_0578	-	30S ribosomal protein S21
575	 30.85	0	568765..569328	-	187	71083284	-	SAR11_0579	-	hypothetical protein
576	 34.20	+1	569353..569583	-	76	71083285	rpmE	SAR11_0580	-	50S ribosomal protein L31
577	 31.04	0	569619..570359	-	246	71083286	suhB	SAR11_0581	-	extragenic suppressor protein suhB
578	 29.59	0	570365..570925	-	186	71083287	efp	SAR11_0582	-	elongation factor P (EF-P)
579	 24.04	-1	570922..571545	-	207	71083288	thiE	SAR11_0583	-	thiamine-phosphate pyrophosphorylase
580	 33.33	0	571532..572542	-	336	71083289	fbaB	SAR11_0584	-	fructose-bisphosphate aldolase
581	 27.14	0	572544..573722	-	392	71083290	pgk	SAR11_0585	-	phosphoglycerate kinase
582	 30.46	0	573722..574729	-	335	71083291	gap	SAR11_0586	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
583	 31.09	0	574732..576690	-	652	71083292	tktB	SAR11_0587	-	transketolase
584	 22.84	-1	576744..577067	+	107	71083293	yqgN	SAR11_0588	-	5-formyltetrahydrofolate cyclo-ligase-like protein
585	 25.73	0	577055..577501	+	148	71083294	-	SAR11_0589	-	hypothetical protein
586	 23.86	-1	577506..578054	+	182	71083295	-	SAR11_0590	-	5-formyltetrahydrofolate cyclo-ligase
587	 31.23	0	578051..578857	+	268	71083296	-	SAR11_0591	-	hypothetical protein
588	 29.61	0	578863..579588	+	241	71083297	-	SAR11_0592	-	hypothetical protein
589	 29.29	0	579588..580082	+	164	71083298	ruvC	SAR11_0593	-	crossover junction endodeoxyribonuclease
590	 30.96	0	580136..580810	+	224	71083299	tolQ	SAR11_0594	-	inner membrane protein TolQ
591	 31.18	0	580812..581228	+	138	71083300	tolR	SAR11_0595	-	tolR protein
592	 30.74	0	581234..582043	+	269	71083301	tolA	SAR11_0596	-	TolA protein
593	 31.10	0	582046..583386	+	446	71083302	tolB	SAR11_0597	-	translocation protein TolB
594	 32.29	0	583474..583953	+	159	71083303	ompA	SAR11_0598	-	OmpA family protein
595	 29.74	0	584040..585014	+	324	71083304	-	SAR11_0599	-	hypothetical protein
596	 24.16	-1	585136..586029	+	297	71083305	mesJ	SAR11_0600	-	cell cycle protein mesj
597	 35.61	+1	586081..587967	+	628	71083306	ftsH	SAR11_0601	-	metalloprotease FtsH
598	 24.98	-1	587974..589026	+	350	71083307	folP	SAR11_0602	-	dihydropteroate synthase-like protein
599	 28.23	0	589026..590357	+	443	71083308	mrsA	SAR11_0603	-	phosphoglucomutase/phosphomannomutase family protein MrsA
600	 29.40	0	590359..591171	+	270	71083309	thiD	SAR11_0604	-	phosphomethylpyrimidine kinase
601	 33.49	+1	591171..592463	+	430	71083310	adsS	SAR11_0605	-	adenylosuccinate synthetase
602	 31.52	0	592460..593341	-	293	71083311	rpoH	SAR11_0606	-	RNA polymerase factor sigma-32
603	 29.05	0	593396..594376	-	326	71083312	sfhB	SAR11_0607	-	pseudouridylate synthase
604	 28.72	0	594493..595425	-	310	71083313	-	SAR11_0608	-	Sua5/YciO/YrdC family protein
605	 21.95	-1	595446..595691	+	81	71083314	-	SAR11_0609	-	exonuclease VII small subunit
606	 27.31	0	595774..596553	+	259	71083315	ispA	SAR11_0610	-	geranyltranstransferase
607	 33.80	+1	596553..598466	+	637	71083316	dxs	SAR11_0611	-	1-deoxy-D-xylulose-5-phosphate synthase
608	 33.80	+1	598475..599557	-	360	71083317	aroC	SAR11_0612	-	chorismate synthase
609	 29.98	0	599591..600217	+	208	71083318	pdxH	SAR11_0613	-	pyridoxamine-phosphate oxidase
610	 29.39	0	600214..601227	-	337	71083319	ispB	SAR11_0614	-	octaprenyl-diphosphate synthase
611	 31.97	0	601340..602146	+	268	71083320	sohB	SAR11_0615	-	S49 family peptidase
612	 32.99	0	602136..603020	+	294	71083321	glyQ	SAR11_0616	-	glycyl-tRNA synthetase subunit alpha
613	 27.34	0	603020..605089	+	689	71083322	glyS	SAR11_0617	-	glycyl-tRNA synthetase subunit beta
614	 32.47	0	605086..607749	+	887	71083323	ppdk	SAR11_0618	-	pyruvate phosphate dikinase
615	 26.62	0	607746..608579	-	277	71083324	nadC	SAR11_0619	-	quinolinate phosphoribosyl transferase
616	 33.74	+1	608585..609574	-	329	71083325	nadA	SAR11_0620	-	quinolinate synthetase
617	 26.58	0	609626..610513	-	295	71083326	-	SAR11_0621	-	GcvT-like aminomethyltransferase protein
618	 31.34	0	610557..611861	+	434	71083327	pyrC2	SAR11_0622	-	dihydroorotase
619	 29.73	0	611858..612190	-	110	71083328	qacE	SAR11_0623	-	small multidrug resistance protein
620	 33.65	+1	612190..614085	-	631	71083329	prpE	SAR11_0624	-	hypothetical protein
621	 39.58	+2	614302..615069	+	255	71083330	-	SAR11_0625	-	bacteriorhodopsin
622	 36.45	+1	615153..615473	+	106	71083331	fdxB	SAR11_0626	-	ferredoxin
623	 29.50	0	615474..616490	+	338	71083332	trxB2	SAR11_0627	-	thioredoxin-disulfide reductase
624	 29.19	0	616487..617113	+	208	71083333	yfcG	SAR11_0628	-	glutathione S-transferase
625	 24.81	-1	617122..617895	+	257	71083334	-	SAR11_0629	-	MOSC domain-containing protein
626	 31.73	0	617929..618240	-	103	71083335	dksA	SAR11_0630	-	DnaK suppressor protein
627	 28.36	0	618356..618556	+	66	71083336	-	SAR11_0631	-	hypothetical protein
628	 25.91	0	618580..619872	+	430	71083337	-	SAR11_0632	-	hypothetical protein
629	 26.92	0	619869..620741	+	290	71083338	-	SAR11_0633	-	glycosyl transferase
630	 29.35	0	620734..622014	-	426	71083339	umuC	SAR11_0634	-	hypothetical protein
631	 32.07	0	621992..622387	-	131	71083340	mucA	SAR11_0635	-	hypothetical protein
632	 26.67	0	622553..623122	+	189	71083341	-	SAR11_0636	-	hypothetical protein
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.